PDB Short entry for 2CP9 HEADER PROTEIN BINDING 19-MAY-05 2CP9 TITLE SOLUTION STRUCTURE OF RSGI RUH-042, A UBA DOMAIN FROM HUMAN TITLE 2 MITOCHONDRIAL ELONGATION FACTOR TS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TS, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA; COMPND 5 SYNONYM: EF-TS, EF-TSMT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P041220-07; SOURCE 7 OTHER_DETAILS: CELL-FREE (E.COLI) KEYWDS UBA, STRUCTURAL GENOMICS, HUMAN, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.OHASHI,H.HIROTA,K.IZUMI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CP9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CP9 1 VERSN REVDAT 1 19-NOV-05 2CP9 0 JRNL AUTH W.OHASHI,H.HIROTA,K.IZUMI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-042, A UBA DOMAIN FROM HUMAN JRNL TITL 2 MITOCHONDRIAL ELONGATION FACTOR TS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CP9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024474. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM RSGI RUH-042 U-13C, 15N; REMARK 210 20MM TRIS-HCL U-2H, 100MM NACL, REMARK 210 1MM DTT U-2H, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : SIMULATED ANNELING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 96.58 -65.53 REMARK 500 1 TRP A 44 -72.44 -56.25 REMARK 500 1 ALA A 57 147.73 -36.33 REMARK 500 2 SER A 3 103.20 -48.53 REMARK 500 2 TYR A 22 159.97 -44.10 REMARK 500 2 SER A 23 176.11 -47.83 REMARK 500 2 CYS A 34 43.47 -99.34 REMARK 500 3 SER A 2 119.19 -37.00 REMARK 500 3 LYS A 29 -71.85 -76.63 REMARK 500 3 LYS A 56 -58.15 -125.55 REMARK 500 4 SER A 9 41.33 -82.48 REMARK 500 4 SER A 23 168.86 -44.58 REMARK 500 4 CYS A 34 -72.46 -79.00 REMARK 500 4 LYS A 51 -70.06 -74.94 REMARK 500 4 SER A 55 161.06 -42.22 REMARK 500 5 TYR A 22 153.58 -40.35 REMARK 500 5 ASN A 26 -70.41 -67.73 REMARK 500 5 LYS A 29 -71.65 -73.59 REMARK 500 5 ALA A 30 -39.73 -39.56 REMARK 500 6 SER A 2 98.97 -51.33 REMARK 500 6 LEU A 38 -38.53 -34.23 REMARK 500 6 TRP A 44 -70.39 -67.43 REMARK 500 6 TRP A 54 44.01 -83.10 REMARK 500 6 ALA A 58 92.59 -69.29 REMARK 500 7 SER A 23 156.41 -44.91 REMARK 500 7 ASP A 37 76.57 -117.87 REMARK 500 7 SER A 63 48.60 36.05 REMARK 500 8 TYR A 22 171.64 -45.65 REMARK 500 8 TRP A 54 88.23 -68.27 REMARK 500 8 PRO A 61 2.77 -69.73 REMARK 500 8 SER A 63 -64.68 -104.49 REMARK 500 9 SER A 5 89.60 -69.82 REMARK 500 9 LYS A 29 -71.09 -73.04 REMARK 500 9 ASP A 37 76.93 -118.86 REMARK 500 9 SER A 59 79.87 -113.56 REMARK 500 10 SER A 3 107.79 -54.02 REMARK 500 10 SER A 5 171.14 -53.23 REMARK 500 10 SER A 8 137.97 -37.92 REMARK 500 10 TYR A 22 146.45 -37.50 REMARK 500 11 SER A 8 107.41 -51.10 REMARK 500 11 SER A 9 48.83 -81.36 REMARK 500 11 SER A 62 140.62 -37.61 REMARK 500 12 SER A 23 150.73 -42.94 REMARK 500 12 PRO A 61 -177.48 -69.82 REMARK 500 13 SER A 3 -39.63 -38.75 REMARK 500 13 LYS A 10 -61.57 -101.09 REMARK 500 13 TYR A 22 166.08 -43.71 REMARK 500 13 SER A 23 173.64 -46.55 REMARK 500 14 SER A 23 156.44 -37.62 REMARK 500 15 SER A 6 176.77 -59.98 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012647.1 RELATED DB: TARGETDB DBREF 2CP9 A 8 58 UNP P43897 EFTS_HUMAN 45 95 SEQADV 2CP9 GLY A 1 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 2 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 3 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 GLY A 4 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 5 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 6 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 GLY A 7 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 59 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 GLY A 60 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 PRO A 61 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 62 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 SER A 63 UNP P43897 CLONING ARTIFACT SEQADV 2CP9 GLY A 64 UNP P43897 CLONING ARTIFACT SEQRES 1 A 64 GLY SER SER GLY SER SER GLY SER SER LYS GLU LEU LEU SEQRES 2 A 64 MET LYS LEU ARG ARG LYS THR GLY TYR SER PHE VAL ASN SEQRES 3 A 64 CYS LYS LYS ALA LEU GLU THR CYS GLY GLY ASP LEU LYS SEQRES 4 A 64 GLN ALA GLU ILE TRP LEU HIS LYS GLU ALA GLN LYS GLU SEQRES 5 A 64 GLY TRP SER LYS ALA ALA SER GLY PRO SER SER GLY HELIX 1 1 LYS A 10 GLY A 21 1 12 HELIX 2 2 SER A 23 GLY A 35 1 13 HELIX 3 3 ASP A 37 GLY A 53 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000