PDB Short entry for 2CQ1 HEADER TRANSCRIPTION 19-MAY-05 2CQ1 TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN PTB-LIKE TITLE 2 PROTEIN L COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTB-LIKE PROTEIN L; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTBLP; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040921-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2CQ1 1 VERSN REVDAT 1 19-NOV-05 2CQ1 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN JRNL TITL 2 PTB-LIKE PROTEIN L JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQ1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024492. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.34MM 13C/15N-PROTEIN, 20MM REMARK 210 D-TRIS-HCL (PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 48 129.99 -170.63 REMARK 500 1 ALA A 56 73.71 -119.20 REMARK 500 1 PRO A 57 155.95 -45.80 REMARK 500 1 THR A 138 -40.72 -134.36 REMARK 500 1 SER A 143 -42.90 -134.98 REMARK 500 2 GLU A 72 -39.57 -35.69 REMARK 500 2 THR A 138 44.34 70.49 REMARK 500 3 SER A 45 43.33 38.61 REMARK 500 3 ASP A 51 104.50 -51.96 REMARK 500 3 LYS A 52 179.49 -50.87 REMARK 500 3 ASP A 54 81.65 -56.50 REMARK 500 3 PRO A 67 161.58 -47.44 REMARK 500 3 GLU A 69 46.55 73.80 REMARK 500 3 ASN A 95 42.36 -87.87 REMARK 500 3 SER A 115 -32.21 -39.27 REMARK 500 3 LYS A 134 41.38 30.39 REMARK 500 3 GLU A 135 132.26 -171.52 REMARK 500 3 LYS A 137 173.35 -51.73 REMARK 500 3 PRO A 141 167.74 -45.83 REMARK 500 4 PRO A 67 160.24 -46.87 REMARK 500 4 ASN A 95 49.10 -106.67 REMARK 500 4 SER A 115 -31.74 -38.73 REMARK 500 4 ASN A 123 35.17 73.08 REMARK 500 4 LYS A 134 36.53 34.40 REMARK 500 4 LEU A 136 93.49 -69.33 REMARK 500 4 PRO A 141 161.12 -45.63 REMARK 500 5 ASP A 51 176.96 -58.99 REMARK 500 5 PRO A 57 153.04 -46.06 REMARK 500 5 PRO A 125 165.93 -47.80 REMARK 500 6 ALA A 56 76.11 -114.14 REMARK 500 6 PRO A 57 101.93 -45.23 REMARK 500 6 ARG A 59 32.18 -87.18 REMARK 500 6 TYR A 113 -35.13 -36.76 REMARK 500 6 SER A 115 -38.95 -38.30 REMARK 500 6 HIS A 120 119.97 -160.89 REMARK 500 6 PRO A 141 47.17 -74.54 REMARK 500 7 SER A 49 90.12 -67.53 REMARK 500 7 PRO A 57 -176.75 -48.68 REMARK 500 7 PRO A 67 158.82 -47.07 REMARK 500 7 THR A 73 -33.50 -35.66 REMARK 500 7 HIS A 120 118.14 -161.10 REMARK 500 7 ASN A 123 31.32 70.78 REMARK 500 7 ASN A 132 -64.69 -95.97 REMARK 500 7 HIS A 133 -72.74 -121.79 REMARK 500 7 LYS A 134 47.00 38.95 REMARK 500 7 GLU A 135 87.18 -61.96 REMARK 500 7 LYS A 137 92.15 -67.16 REMARK 500 7 PRO A 141 40.99 -77.04 REMARK 500 8 ASP A 51 42.73 -106.00 REMARK 500 8 ALA A 56 105.01 -172.88 REMARK 500 8 PRO A 57 166.68 -47.35 REMARK 500 8 PRO A 67 170.38 -48.01 REMARK 500 8 GLU A 72 -37.02 -37.43 REMARK 500 8 LYS A 94 140.44 -36.69 REMARK 500 8 HIS A 120 115.78 -160.60 REMARK 500 8 PRO A 141 97.82 -45.57 REMARK 500 9 ALA A 56 72.56 -117.56 REMARK 500 9 PRO A 67 153.33 -47.70 REMARK 500 9 TYR A 113 -36.12 -39.18 REMARK 500 9 SER A 115 -38.87 -35.14 REMARK 500 9 LYS A 137 119.06 -168.54 REMARK 500 9 SER A 139 157.97 -49.23 REMARK 500 10 PRO A 57 106.98 -45.69 REMARK 500 10 PRO A 67 161.85 -47.78 REMARK 500 10 HIS A 120 118.40 -160.04 REMARK 500 10 PRO A 125 163.08 -48.23 REMARK 500 10 SER A 143 51.80 -117.12 REMARK 500 11 PRO A 57 171.02 -45.94 REMARK 500 11 SER A 115 -38.80 -36.65 REMARK 500 11 LYS A 134 42.17 -95.03 REMARK 500 12 PRO A 67 165.62 -46.90 REMARK 500 12 THR A 73 -39.37 -38.99 REMARK 500 12 SER A 115 -32.15 -37.81 REMARK 500 12 GLU A 135 177.15 -51.77 REMARK 500 12 PRO A 141 34.08 -79.69 REMARK 500 13 SER A 45 -55.07 -131.69 REMARK 500 13 SER A 46 42.20 35.08 REMARK 500 13 LYS A 52 162.69 -47.67 REMARK 500 13 MET A 53 175.90 -57.76 REMARK 500 13 ALA A 56 104.93 -173.64 REMARK 500 13 PRO A 57 171.14 -45.64 REMARK 500 13 TYR A 113 -38.59 -37.84 REMARK 500 13 SER A 115 -39.73 -35.02 REMARK 500 13 HIS A 120 119.22 -162.57 REMARK 500 13 PRO A 125 151.98 -43.39 REMARK 500 13 HIS A 133 40.41 34.82 REMARK 500 14 MET A 53 43.84 -99.36 REMARK 500 14 ASP A 54 107.51 -40.44 REMARK 500 14 PRO A 125 153.32 -43.53 REMARK 500 14 GLU A 135 133.95 -174.65 REMARK 500 14 PRO A 141 158.18 -42.85 REMARK 500 15 ALA A 56 77.53 -115.33 REMARK 500 15 PRO A 57 152.00 -45.87 REMARK 500 15 ASN A 95 104.98 -168.33 REMARK 500 15 TYR A 113 -38.70 -37.47 REMARK 500 15 SER A 115 -39.10 -36.24 REMARK 500 15 HIS A 120 119.33 -161.33 REMARK 500 16 SER A 48 42.19 -93.04 REMARK 500 16 PRO A 57 152.36 -45.69 REMARK 500 16 PRO A 125 152.35 -42.30 REMARK 500 16 SER A 131 178.21 -55.18 REMARK 500 16 LYS A 134 47.24 -79.69 REMARK 500 16 LEU A 136 120.17 -35.03 REMARK 500 16 SER A 139 151.55 -49.89 REMARK 500 17 PRO A 57 165.59 -45.64 REMARK 500 17 PRO A 67 154.68 -46.30 REMARK 500 17 ASN A 95 106.47 -170.68 REMARK 500 17 SER A 115 -39.86 -35.48 REMARK 500 17 PRO A 125 157.81 -43.85 REMARK 500 17 LYS A 134 47.66 -81.72 REMARK 500 18 SER A 45 -60.97 -107.27 REMARK 500 18 ALA A 56 54.65 73.18 REMARK 500 18 PRO A 57 151.03 -44.66 REMARK 500 18 ASN A 95 44.88 -108.58 REMARK 500 18 TYR A 113 -38.78 -38.34 REMARK 500 18 HIS A 120 108.75 -161.99 REMARK 500 18 HIS A 133 146.12 -38.61 REMARK 500 18 LYS A 137 42.32 34.24 REMARK 500 18 PRO A 141 40.83 -77.78 REMARK 500 19 SER A 46 39.68 -98.73 REMARK 500 19 ALA A 56 74.90 -116.82 REMARK 500 19 ASN A 95 44.52 -92.64 REMARK 500 19 SER A 115 -31.71 -37.44 REMARK 500 19 SER A 139 150.76 -43.25 REMARK 500 20 SER A 48 42.26 38.15 REMARK 500 20 PRO A 57 161.18 -45.49 REMARK 500 20 GLN A 129 -177.94 -171.49 REMARK 500 20 LEU A 136 59.53 -108.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002009793.1 RELATED DB: TARGETDB DBREF 2CQ1 A 51 138 UNP Q969N9 Q969N9_HUMAN 51 138 SEQADV 2CQ1 GLY A 44 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 45 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 46 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 GLY A 47 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 48 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 49 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 GLY A 50 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 139 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 GLY A 140 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 PRO A 141 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 142 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 SER A 143 UNP Q969N9 CLONING ARTIFACT SEQADV 2CQ1 GLY A 144 UNP Q969N9 CLONING ARTIFACT SEQRES 1 A 101 GLY SER SER GLY SER SER GLY ASP LYS MET ASP GLY ALA SEQRES 2 A 101 PRO SER ARG VAL LEU HIS ILE ARG LYS LEU PRO GLY GLU SEQRES 3 A 101 VAL THR GLU THR GLU VAL ILE ALA LEU GLY LEU PRO PHE SEQRES 4 A 101 GLY LYS VAL THR ASN ILE LEU MET LEU LYS GLY LYS ASN SEQRES 5 A 101 GLN ALA PHE LEU GLU LEU ALA THR GLU GLU ALA ALA ILE SEQRES 6 A 101 THR MET VAL ASN TYR TYR SER ALA VAL THR PRO HIS LEU SEQRES 7 A 101 ARG ASN GLN PRO ILE TYR ILE GLN TYR SER ASN HIS LYS SEQRES 8 A 101 GLU LEU LYS THR SER GLY PRO SER SER GLY HELIX 1 1 THR A 71 LEU A 78 1 8 HELIX 2 2 THR A 103 VAL A 117 1 15 SHEET 1 A 4 VAL A 85 LEU A 91 0 SHEET 2 A 4 GLN A 96 LEU A 101 -1 O PHE A 98 N LEU A 89 SHEET 3 A 4 VAL A 60 ARG A 64 -1 N LEU A 61 O LEU A 99 SHEET 4 A 4 TYR A 127 TYR A 130 -1 O TYR A 127 N ARG A 64 SHEET 1 B 2 HIS A 120 LEU A 121 0 SHEET 2 B 2 GLN A 124 PRO A 125 -1 O GLN A 124 N LEU A 121 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000