PDB Short entry for 2CQ3 HEADER RNA BINDING PROTEIN 19-MAY-05 2CQ3 TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING MOTIF PROTEIN TITLE 2 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: RNA BINDING MOTIF PROTEIN 9, HEXARIBONUCLEOTIDE BINDING COMPND 6 PROTEIN 2, REPRESSOR OF TAMOXIFEN TRANSCRIPTIONAL ACTIVITY; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM9; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041108-03; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQ3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQ3 1 VERSN REVDAT 1 19-NOV-05 2CQ3 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING JRNL TITL 2 MOTIF PROTEIN 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024494. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.36MM 13C/15N-PROTEIN, 20MM D REMARK 210 -TRIS-HCL (PH 7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 157 79.33 -66.99 REMARK 500 1 HIS A 181 78.93 -61.93 REMARK 500 1 THR A 201 130.09 -35.60 REMARK 500 1 SER A 203 87.16 -64.78 REMARK 500 2 SER A 114 43.48 -87.88 REMARK 500 2 ASP A 136 -70.69 -63.02 REMARK 500 2 ARG A 157 40.83 36.69 REMARK 500 2 HIS A 181 94.20 -60.73 REMARK 500 2 ALA A 197 41.47 -97.82 REMARK 500 3 SER A 110 140.94 -170.90 REMARK 500 3 LYS A 117 137.03 -36.07 REMARK 500 3 ASN A 127 40.54 73.27 REMARK 500 3 PHE A 154 -70.02 -116.43 REMARK 500 3 SER A 159 114.94 -165.46 REMARK 500 3 LYS A 160 108.92 -173.93 REMARK 500 3 HIS A 181 93.54 -55.38 REMARK 500 3 ASN A 202 126.61 -171.71 REMARK 500 4 PRO A 129 168.63 -46.39 REMARK 500 4 ARG A 157 74.00 -65.51 REMARK 500 4 SER A 159 -74.94 -51.30 REMARK 500 4 ALA A 195 -62.30 -91.16 REMARK 500 5 ASN A 113 -179.79 -63.75 REMARK 500 5 SER A 116 105.37 -34.51 REMARK 500 5 HIS A 181 109.28 -36.62 REMARK 500 5 THR A 201 -71.07 -116.19 REMARK 500 6 SER A 114 118.82 -164.76 REMARK 500 6 PRO A 120 166.01 -46.92 REMARK 500 6 PRO A 129 178.00 -46.44 REMARK 500 6 HIS A 181 86.55 -63.76 REMARK 500 7 PRO A 120 158.48 -45.60 REMARK 500 7 GLU A 156 76.94 -100.12 REMARK 500 7 SER A 159 41.71 -95.77 REMARK 500 7 HIS A 181 100.18 -43.77 REMARK 500 7 THR A 196 42.48 -93.77 REMARK 500 7 MET A 200 43.22 -98.80 REMARK 500 8 ASN A 113 124.81 -172.37 REMARK 500 8 SER A 114 172.85 -51.95 REMARK 500 8 PRO A 129 176.78 -46.65 REMARK 500 8 ASP A 136 -70.75 -58.91 REMARK 500 8 HIS A 181 93.50 -34.39 REMARK 500 8 SER A 203 104.49 -57.49 REMARK 500 8 SER A 207 108.68 -46.64 REMARK 500 9 PRO A 129 153.57 -45.83 REMARK 500 9 ASN A 155 -176.96 -171.64 REMARK 500 9 SER A 159 54.81 34.19 REMARK 500 9 ARG A 177 -75.05 -72.82 REMARK 500 9 THR A 196 43.08 34.45 REMARK 500 10 PRO A 129 -179.98 -47.21 REMARK 500 10 SER A 159 113.05 -35.21 REMARK 500 10 HIS A 181 90.75 -63.71 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014071.1 RELATED DB: TARGETDB DBREF 2CQ3 A 113 202 UNP O43251 RBM9_HUMAN 113 202 SEQADV 2CQ3 GLY A 106 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 107 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 108 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 GLY A 109 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 110 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 111 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 GLY A 112 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 203 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 GLY A 204 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 PRO A 205 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 206 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 SER A 207 UNP O43251 CLONING ARTIFACT SEQADV 2CQ3 GLY A 208 UNP O43251 CLONING ARTIFACT SEQRES 1 A 103 GLY SER SER GLY SER SER GLY ASN SER GLU SER LYS SER SEQRES 2 A 103 THR PRO LYS ARG LEU HIS VAL SER ASN ILE PRO PHE ARG SEQRES 3 A 103 PHE ARG ASP PRO ASP LEU ARG GLN MET PHE GLY GLN PHE SEQRES 4 A 103 GLY LYS ILE LEU ASP VAL GLU ILE ILE PHE ASN GLU ARG SEQRES 5 A 103 GLY SER LYS GLY PHE GLY PHE VAL THR PHE GLU ASN SER SEQRES 6 A 103 ALA ASP ALA ASP ARG ALA ARG GLU LYS LEU HIS GLY THR SEQRES 7 A 103 VAL VAL GLU GLY ARG LYS ILE GLU VAL ASN ASN ALA THR SEQRES 8 A 103 ALA ARG VAL MET THR ASN SER GLY PRO SER SER GLY HELIX 1 1 ARG A 133 PHE A 141 1 9 HELIX 2 2 GLY A 142 PHE A 144 5 3 HELIX 3 3 ASN A 169 HIS A 181 1 13 SHEET 1 A 4 ILE A 147 ILE A 153 0 SHEET 2 A 4 PHE A 162 PHE A 167 -1 O THR A 166 N LEU A 148 SHEET 3 A 4 ARG A 122 SER A 126 -1 N LEU A 123 O VAL A 165 SHEET 4 A 4 GLU A 191 ASN A 194 -1 O ASN A 193 N HIS A 124 SHEET 1 B 2 VAL A 184 VAL A 185 0 SHEET 2 B 2 ARG A 188 LYS A 189 -1 O ARG A 188 N VAL A 185 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000