PDB Short entry for 2CQ8 HEADER OXIDOREDUCTASE 19-MAY-05 2CQ8 TITLE SOLUTION STRUCTURE OF RSGI RUH-033, A PP-BINDING DOMAIN OF 10-FTHFDH TITLE 2 FROM HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10-FORMYLTETRAHYDROFOLATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PP-BINDING DOMAIN; COMPND 5 SYNONYM: 10-FTHFDH, ALDEHYDE DEHYDROGENASE 1 FAMILY MEMBER L1; COMPND 6 EC: 1.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FTHFD; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040712-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS 10-FTHFDH, TETRAHYDROFOLATE, PP-BINDING, ACYL CARRIER PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.ABE,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQ8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQ8 1 VERSN REVDAT 1 19-NOV-05 2CQ8 0 JRNL AUTH T.ABE,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-033, A PP-BINDING DOMAIN OF JRNL TITL 2 10-FTHFDH FROM HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.8 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQ8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024499. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.32MM RSGI RUH-033 U-15,13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N-SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C-SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 20 H LEU A 24 1.50 REMARK 500 O ASP A 59 H LEU A 63 1.53 REMARK 500 O ARG A 62 H GLU A 66 1.53 REMARK 500 H PHE A 50 O SER A 85 1.54 REMARK 500 O ILE A 91 H VAL A 95 1.56 REMARK 500 O VAL A 61 H GLU A 65 1.58 REMARK 500 O PHE A 87 H ILE A 91 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 101.80 54.34 REMARK 500 1 ALA A 13 82.93 65.48 REMARK 500 1 SER A 15 111.76 62.77 REMARK 500 1 VAL A 16 152.79 59.24 REMARK 500 1 LEU A 19 -172.54 -61.28 REMARK 500 1 ALA A 22 -61.04 -91.49 REMARK 500 1 ILE A 37 -73.48 -65.29 REMARK 500 1 PRO A 39 -71.05 -75.02 REMARK 500 1 PHE A 51 -66.95 -92.05 REMARK 500 1 SER A 53 -77.99 -39.62 REMARK 500 1 ALA A 56 -163.99 -100.34 REMARK 500 1 ASP A 72 68.86 61.98 REMARK 500 1 ASP A 101 169.88 61.84 REMARK 500 1 ASP A 102 128.61 67.56 REMARK 500 1 SER A 108 91.91 43.11 REMARK 500 2 LYS A 10 148.26 63.19 REMARK 500 2 ALA A 12 97.59 67.32 REMARK 500 2 ALA A 13 63.37 -176.27 REMARK 500 2 SER A 14 146.27 -177.95 REMARK 500 2 SER A 15 167.60 56.03 REMARK 500 2 LEU A 19 -177.25 -60.57 REMARK 500 2 ILE A 37 -74.08 -60.47 REMARK 500 2 PRO A 39 -72.09 -75.04 REMARK 500 2 ASP A 72 69.35 61.65 REMARK 500 2 ASP A 101 161.62 60.83 REMARK 500 2 SER A 108 174.59 56.94 REMARK 500 2 SER A 109 -61.47 -160.35 REMARK 500 3 SER A 2 118.87 -177.00 REMARK 500 3 SER A 3 124.65 -175.92 REMARK 500 3 SER A 6 -71.59 -52.62 REMARK 500 3 LYS A 10 -159.24 40.34 REMARK 500 3 SER A 14 -61.06 -134.53 REMARK 500 3 SER A 15 121.81 61.06 REMARK 500 3 THR A 20 -159.08 -131.51 REMARK 500 3 ILE A 37 -71.23 -68.80 REMARK 500 3 PRO A 39 -71.40 -74.95 REMARK 500 3 LYS A 52 -32.13 -39.21 REMARK 500 3 ASP A 72 77.98 62.00 REMARK 500 3 ASP A 80 -35.60 -37.92 REMARK 500 3 ASP A 102 106.20 -164.51 REMARK 500 3 SER A 109 -65.80 70.57 REMARK 500 4 SER A 3 113.32 58.96 REMARK 500 4 SER A 6 85.72 -151.89 REMARK 500 4 ALA A 12 -60.00 -147.20 REMARK 500 4 VAL A 16 173.62 49.87 REMARK 500 4 LEU A 19 -178.57 -58.22 REMARK 500 4 ILE A 37 -71.09 -71.78 REMARK 500 4 PRO A 39 -70.67 -74.98 REMARK 500 4 SER A 53 -78.52 -63.48 REMARK 500 4 ASP A 72 70.97 61.62 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000885.1 RELATED DB: TARGETDB DBREF 2CQ8 A 8 104 UNP O75891 FTHFD_HUMAN 305 401 SEQADV 2CQ8 GLY A 1 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 2 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 3 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 GLY A 4 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 5 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 6 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 GLY A 7 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 105 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 GLY A 106 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 PRO A 107 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 108 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 SER A 109 UNP O75891 CLONING ARTIFACT SEQADV 2CQ8 GLY A 110 UNP O75891 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY PHE PHE LYS GLY ALA ALA SEQRES 2 A 110 SER SER VAL LEU GLU LEU THR GLU ALA GLU LEU VAL THR SEQRES 3 A 110 ALA GLU ALA VAL ARG SER VAL TRP GLN ARG ILE LEU PRO SEQRES 4 A 110 LYS VAL LEU GLU VAL GLU ASP SER THR ASP PHE PHE LYS SEQRES 5 A 110 SER GLY ALA ALA SER VAL ASP VAL VAL ARG LEU VAL GLU SEQRES 6 A 110 GLU VAL LYS GLU LEU CYS ASP GLY LEU GLU LEU GLU ASN SEQRES 7 A 110 GLU ASP VAL TYR MET ALA SER THR PHE GLY ASP PHE ILE SEQRES 8 A 110 GLN LEU LEU VAL ARG LYS LEU ARG GLY ASP ASP GLU GLU SEQRES 9 A 110 SER GLY PRO SER SER GLY HELIX 1 1 ALA A 22 LEU A 38 1 17 HELIX 2 2 VAL A 58 CYS A 71 1 14 HELIX 3 3 GLU A 77 ALA A 84 1 8 HELIX 4 4 THR A 86 ASP A 101 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000