PDB Short entry for 2CQJ HEADER RNA BINDING PROTEIN 20-MAY-05 2CQJ TITLE SOLUTION STRUCTURE OF THE S4 DOMAIN OF U3 SMALL NUCLEOLAR TITLE 2 RIBONUCLEOPROTEIN PROTEIN IMP3 HOMOLOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S4 DOMAIN; COMPND 5 SYNONYM: BRMS2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C15ORF12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041213-13; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS S4 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQJ 1 VERSN REVDAT 1 20-NOV-05 2CQJ 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE S4 DOMAIN OF U3 SMALL NUCLEOLAR JRNL TITL 2 RIBONUCLEOPROTEIN PROTEIN IMP3 HOMOLOG JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024510. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 119 29.43 48.73 REMARK 500 1 PRO A 140 3.38 -69.71 REMARK 500 1 PHE A 157 33.35 -93.12 REMARK 500 1 ILE A 166 130.40 -39.07 REMARK 500 2 GLN A 122 -70.50 -80.50 REMARK 500 2 PRO A 140 3.42 -69.74 REMARK 500 3 ARG A 119 27.51 47.52 REMARK 500 3 PRO A 140 3.48 -69.81 REMARK 500 3 PHE A 157 34.49 -91.67 REMARK 500 3 SER A 163 47.71 -108.06 REMARK 500 3 ILE A 166 145.20 -36.07 REMARK 500 4 PRO A 140 3.38 -69.76 REMARK 500 4 PHE A 157 34.48 -91.78 REMARK 500 4 SER A 163 63.82 -113.88 REMARK 500 4 SER A 171 137.56 -39.00 REMARK 500 5 GLN A 122 -68.20 -90.52 REMARK 500 5 PRO A 140 3.50 -69.74 REMARK 500 5 ILE A 166 140.71 -33.95 REMARK 500 6 SER A 107 44.38 -104.17 REMARK 500 6 ARG A 119 25.11 48.80 REMARK 500 6 GLN A 122 -74.25 -100.49 REMARK 500 6 PRO A 140 3.70 -69.76 REMARK 500 6 ARG A 152 -70.06 -34.07 REMARK 500 6 PHE A 157 33.70 -86.49 REMARK 500 6 PRO A 169 99.98 -69.79 REMARK 500 7 GLN A 122 -66.16 -90.76 REMARK 500 7 PRO A 140 3.47 -69.83 REMARK 500 7 SER A 164 -74.41 -50.60 REMARK 500 7 PRO A 169 -178.57 -69.81 REMARK 500 8 SER A 106 93.97 -65.16 REMARK 500 8 ARG A 119 27.37 48.60 REMARK 500 8 GLN A 122 -70.66 -89.65 REMARK 500 8 PRO A 140 3.58 -69.84 REMARK 500 8 SER A 171 106.09 -59.42 REMARK 500 9 GLN A 122 -68.22 -93.03 REMARK 500 9 PRO A 140 3.64 -69.82 REMARK 500 9 LYS A 165 40.83 -102.21 REMARK 500 9 SER A 170 152.36 -39.06 REMARK 500 10 PRO A 140 3.60 -69.79 REMARK 500 10 PHE A 157 31.20 -97.13 REMARK 500 10 SER A 171 -52.01 -125.47 REMARK 500 11 GLN A 122 -67.74 -96.81 REMARK 500 11 PRO A 140 3.39 -69.69 REMARK 500 11 SER A 170 121.73 -37.78 REMARK 500 12 ARG A 119 29.30 45.78 REMARK 500 12 PRO A 140 3.55 -69.74 REMARK 500 13 GLN A 122 -72.84 -62.46 REMARK 500 13 PRO A 140 3.47 -69.79 REMARK 500 13 ARG A 152 -30.78 -37.77 REMARK 500 13 SER A 163 40.71 -101.20 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002801.1 RELATED DB: TARGETDB DBREF 2CQJ A 109 166 UNP Q9NV31 IMP3_HUMAN 109 166 SEQADV 2CQJ GLY A 102 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 103 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 104 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ GLY A 105 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 106 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 107 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ GLY A 108 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 167 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ GLY A 168 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ PRO A 169 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 170 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ SER A 171 UNP Q9NV31 CLONING ARTIFACT SEQADV 2CQJ GLY A 172 UNP Q9NV31 CLONING ARTIFACT SEQRES 1 A 71 GLY SER SER GLY SER SER GLY ARG ARG LEU PRO THR VAL SEQRES 2 A 71 LEU LEU LYS LEU ARG MET ALA GLN HIS LEU GLN ALA ALA SEQRES 3 A 71 VAL ALA PHE VAL GLU GLN GLY HIS VAL ARG VAL GLY PRO SEQRES 4 A 71 ASP VAL VAL THR ASP PRO ALA PHE LEU VAL THR ARG SER SEQRES 5 A 71 MET GLU ASP PHE VAL THR TRP VAL ASP SER SER LYS ILE SEQRES 6 A 71 SER GLY PRO SER SER GLY HELIX 1 1 LEU A 111 LYS A 117 1 7 HELIX 2 2 LEU A 124 GLU A 132 1 9 HELIX 3 3 ARG A 152 GLU A 155 1 4 SHEET 1 A 2 ARG A 109 ARG A 110 0 SHEET 2 A 2 LEU A 149 THR A 151 -1 O VAL A 150 N ARG A 109 SHEET 1 B 3 ASP A 141 VAL A 142 0 SHEET 2 B 3 VAL A 136 VAL A 138 -1 SHEET 3 B 3 VAL A 158 TRP A 160 -1 O THR A 159 N ARG A 137 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000