PDB Short entry for 2CRX HEADER HYDROLASE, LIGASE/DNA 19-JUN-98 2CRX TITLE STRUCTURE OF THE HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP SITE- TITLE 2 SPECIFIC RECOMBINATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA 35-MER; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (CRE RECOMBINASE); COMPND 7 CHAIN: A, B; COMPND 8 SYNONYM: CRE-HJ2, RGBPP1 RECOMBINASE; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P1; SOURCE 5 ORGANISM_TAXID: 10678; SOURCE 6 ATCC: 25404-B1; SOURCE 7 COLLECTION: 25404-B1; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS CRE RECOMBINASE, HOLLIDAY JUNCTION, RECOMBINATION, RECOMBINASE-DNA KEYWDS 2 COMPLEX, HYDROLASE, LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.N.GOPAUL,F.GUO,G.D.VANDUYNE REVDAT 3 23-AUG-23 2CRX 1 REMARK REVDAT 2 24-FEB-09 2CRX 1 VERSN REVDAT 1 14-DEC-99 2CRX 0 JRNL AUTH D.N.GOPAUL,F.GUO,G.D.VAN DUYNE JRNL TITL STRUCTURE OF THE HOLLIDAY JUNCTION INTERMEDIATE IN CRE-LOXP JRNL TITL 2 SITE-SPECIFIC RECOMBINATION. JRNL REF EMBO J. V. 17 4175 1998 JRNL REFN ISSN 0261-4189 JRNL PMID 9670032 JRNL DOI 10.1093/EMBOJ/17.14.4175 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.GUO,D.N.GOPAUL,G.D.VAN DUYNE REMARK 1 TITL STRUCTURE OF CRE RECOMBINASE COMPLEXED WITH DNA IN A REMARK 1 TITL 2 SITE-SPECIFIC RECOMBINATION SYNAPSE REMARK 1 REF NATURE V. 389 40 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 36470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1940 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3426 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 188 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4873 REMARK 3 NUCLEIC ACID ATOMS : 1405 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.500 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.600 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 9.000 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-99. REMARK 100 THE DEPOSITION ID IS D_1000177950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-97 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 2.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1CRX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM ACETATE BUFFER PH 5.0, 25% MPD, REMARK 280 200MM NACL, 20MM CACL2, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.45000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 122.50000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 180.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT D 1 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 HIS A 8 REMARK 465 GLN A 9 REMARK 465 ASN A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 VAL A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 ARG A 199 REMARK 465 THR A 200 REMARK 465 LYS A 201 REMARK 465 THR A 202 REMARK 465 LEU A 203 REMARK 465 VAL A 204 REMARK 465 SER A 205 REMARK 465 THR A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 VAL A 209 REMARK 465 LYS A 276 REMARK 465 ASP A 277 REMARK 465 ASP A 278 REMARK 465 SER A 279 REMARK 465 GLY A 280 REMARK 465 GLN A 281 REMARK 465 ARG A 282 REMARK 465 GLY A 342 REMARK 465 ASP A 343 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 LEU B 4 REMARK 465 LEU B 5 REMARK 465 THR B 6 REMARK 465 VAL B 7 REMARK 465 HIS B 8 REMARK 465 GLN B 9 REMARK 465 ASN B 10 REMARK 465 LEU B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 LEU B 14 REMARK 465 PRO B 15 REMARK 465 VAL B 16 REMARK 465 ASP B 17 REMARK 465 ALA B 18 REMARK 465 ARG B 199 REMARK 465 THR B 200 REMARK 465 LYS B 201 REMARK 465 THR B 202 REMARK 465 LEU B 203 REMARK 465 VAL B 204 REMARK 465 SER B 205 REMARK 465 THR B 206 REMARK 465 ASN B 327 REMARK 465 LEU B 328 REMARK 465 ASP B 329 REMARK 465 SER B 330 REMARK 465 GLU B 331 REMARK 465 THR B 332 REMARK 465 GLY B 342 REMARK 465 ASP B 343 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 16 P OP1 OP2 REMARK 470 DC D 16 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 428 O HOH A 446 1.94 REMARK 500 O4' DC D 16 O HOH D 70 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA D 17 O3' DA D 17 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA D 17 C5' - C4' - C3' ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 43.94 -105.38 REMARK 500 ARG A 101 34.50 -85.08 REMARK 500 ARG A 121 -74.96 -63.11 REMARK 500 ASN A 151 32.25 -97.90 REMARK 500 THR A 188 -30.84 -151.55 REMARK 500 ASP A 189 89.60 -156.50 REMARK 500 ARG A 192 141.83 -34.01 REMARK 500 VAL A 227 16.08 -67.87 REMARK 500 LYS A 244 -9.02 -55.69 REMARK 500 ALA A 249 75.49 -114.42 REMARK 500 THR A 253 -60.81 -91.21 REMARK 500 ALA A 285 -157.13 -110.17 REMARK 500 ALA A 312 -80.24 -39.58 REMARK 500 VAL A 318 -19.67 -36.95 REMARK 500 ASN A 327 22.36 -70.88 REMARK 500 GLU A 340 42.35 -91.30 REMARK 500 SER B 20 -81.84 -137.64 REMARK 500 ASP B 33 45.08 -96.77 REMARK 500 ARG B 101 -13.53 -49.44 REMARK 500 ASP B 233 95.11 -163.48 REMARK 500 PRO B 234 -18.28 -43.40 REMARK 500 ASP B 278 30.54 -65.66 REMARK 500 SER B 290 -56.46 -26.31 REMARK 500 ALA B 300 -70.41 -67.78 REMARK 500 ALA B 334 -83.86 -26.41 REMARK 500 GLU B 340 23.75 -65.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 24 0.07 SIDE CHAIN REMARK 500 DA D 24 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CIA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: RECOMBINASE ACTIVE SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CIB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: RECOMBINASE ACTIVE SITE. DBREF 2CRX A 1 343 UNP P06956 RECR_BPP1 1 343 DBREF 2CRX B 1 343 UNP P06956 RECR_BPP1 1 343 DBREF 2CRX C 1 35 PDB 2CRX 2CRX 1 35 DBREF 2CRX D 1 35 PDB 2CRX 2CRX 1 35 SEQRES 1 C 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 C 35 DA DG DC DA DT DA DT DG DC DT DA DT DA SEQRES 3 C 35 DC DG DA DA DG DT DT DA DT SEQRES 1 D 35 DT DA DT DA DA DC DT DT DC DG DT DA DT SEQRES 2 D 35 DA DG DC DA DT DA DT DG DC DT DA DT DA SEQRES 3 D 35 DC DG DA DA DG DT DT DA DT SEQRES 1 A 343 MET SER ASN LEU LEU THR VAL HIS GLN ASN LEU PRO ALA SEQRES 2 A 343 LEU PRO VAL ASP ALA THR SER ASP GLU VAL ARG LYS ASN SEQRES 3 A 343 LEU MET ASP MET PHE ARG ASP ARG GLN ALA PHE SER GLU SEQRES 4 A 343 HIS THR TRP LYS MET LEU LEU SER VAL CYS ARG SER TRP SEQRES 5 A 343 ALA ALA TRP CYS LYS LEU ASN ASN ARG LYS TRP PHE PRO SEQRES 6 A 343 ALA GLU PRO GLU ASP VAL ARG ASP TYR LEU LEU TYR LEU SEQRES 7 A 343 GLN ALA ARG GLY LEU ALA VAL LYS THR ILE GLN GLN HIS SEQRES 8 A 343 LEU GLY GLN LEU ASN MET LEU HIS ARG ARG SER GLY LEU SEQRES 9 A 343 PRO ARG PRO SER ASP SER ASN ALA VAL SER LEU VAL MET SEQRES 10 A 343 ARG ARG ILE ARG LYS GLU ASN VAL ASP ALA GLY GLU ARG SEQRES 11 A 343 ALA LYS GLN ALA LEU ALA PHE GLU ARG THR ASP PHE ASP SEQRES 12 A 343 GLN VAL ARG SER LEU MET GLU ASN SER ASP ARG CYS GLN SEQRES 13 A 343 ASP ILE ARG ASN LEU ALA PHE LEU GLY ILE ALA TYR ASN SEQRES 14 A 343 THR LEU LEU ARG ILE ALA GLU ILE ALA ARG ILE ARG VAL SEQRES 15 A 343 LYS ASP ILE SER ARG THR ASP GLY GLY ARG MET LEU ILE SEQRES 16 A 343 HIS ILE GLY ARG THR LYS THR LEU VAL SER THR ALA GLY SEQRES 17 A 343 VAL GLU LYS ALA LEU SER LEU GLY VAL THR LYS LEU VAL SEQRES 18 A 343 GLU ARG TRP ILE SER VAL SER GLY VAL ALA ASP ASP PRO SEQRES 19 A 343 ASN ASN TYR LEU PHE CYS ARG VAL ARG LYS ASN GLY VAL SEQRES 20 A 343 ALA ALA PRO SER ALA THR SER GLN LEU SER THR ARG ALA SEQRES 21 A 343 LEU GLU GLY ILE PHE GLU ALA THR HIS ARG LEU ILE TYR SEQRES 22 A 343 GLY ALA LYS ASP ASP SER GLY GLN ARG TYR LEU ALA TRP SEQRES 23 A 343 SER GLY HIS SER ALA ARG VAL GLY ALA ALA ARG ASP MET SEQRES 24 A 343 ALA ARG ALA GLY VAL SER ILE PRO GLU ILE MET GLN ALA SEQRES 25 A 343 GLY GLY TRP THR ASN VAL ASN ILE VAL MET ASN TYR ILE SEQRES 26 A 343 ARG ASN LEU ASP SER GLU THR GLY ALA MET VAL ARG LEU SEQRES 27 A 343 LEU GLU ASP GLY ASP SEQRES 1 B 343 MET SER ASN LEU LEU THR VAL HIS GLN ASN LEU PRO ALA SEQRES 2 B 343 LEU PRO VAL ASP ALA THR SER ASP GLU VAL ARG LYS ASN SEQRES 3 B 343 LEU MET ASP MET PHE ARG ASP ARG GLN ALA PHE SER GLU SEQRES 4 B 343 HIS THR TRP LYS MET LEU LEU SER VAL CYS ARG SER TRP SEQRES 5 B 343 ALA ALA TRP CYS LYS LEU ASN ASN ARG LYS TRP PHE PRO SEQRES 6 B 343 ALA GLU PRO GLU ASP VAL ARG ASP TYR LEU LEU TYR LEU SEQRES 7 B 343 GLN ALA ARG GLY LEU ALA VAL LYS THR ILE GLN GLN HIS SEQRES 8 B 343 LEU GLY GLN LEU ASN MET LEU HIS ARG ARG SER GLY LEU SEQRES 9 B 343 PRO ARG PRO SER ASP SER ASN ALA VAL SER LEU VAL MET SEQRES 10 B 343 ARG ARG ILE ARG LYS GLU ASN VAL ASP ALA GLY GLU ARG SEQRES 11 B 343 ALA LYS GLN ALA LEU ALA PHE GLU ARG THR ASP PHE ASP SEQRES 12 B 343 GLN VAL ARG SER LEU MET GLU ASN SER ASP ARG CYS GLN SEQRES 13 B 343 ASP ILE ARG ASN LEU ALA PHE LEU GLY ILE ALA TYR ASN SEQRES 14 B 343 THR LEU LEU ARG ILE ALA GLU ILE ALA ARG ILE ARG VAL SEQRES 15 B 343 LYS ASP ILE SER ARG THR ASP GLY GLY ARG MET LEU ILE SEQRES 16 B 343 HIS ILE GLY ARG THR LYS THR LEU VAL SER THR ALA GLY SEQRES 17 B 343 VAL GLU LYS ALA LEU SER LEU GLY VAL THR LYS LEU VAL SEQRES 18 B 343 GLU ARG TRP ILE SER VAL SER GLY VAL ALA ASP ASP PRO SEQRES 19 B 343 ASN ASN TYR LEU PHE CYS ARG VAL ARG LYS ASN GLY VAL SEQRES 20 B 343 ALA ALA PRO SER ALA THR SER GLN LEU SER THR ARG ALA SEQRES 21 B 343 LEU GLU GLY ILE PHE GLU ALA THR HIS ARG LEU ILE TYR SEQRES 22 B 343 GLY ALA LYS ASP ASP SER GLY GLN ARG TYR LEU ALA TRP SEQRES 23 B 343 SER GLY HIS SER ALA ARG VAL GLY ALA ALA ARG ASP MET SEQRES 24 B 343 ALA ARG ALA GLY VAL SER ILE PRO GLU ILE MET GLN ALA SEQRES 25 B 343 GLY GLY TRP THR ASN VAL ASN ILE VAL MET ASN TYR ILE SEQRES 26 B 343 ARG ASN LEU ASP SER GLU THR GLY ALA MET VAL ARG LEU SEQRES 27 B 343 LEU GLU ASP GLY ASP FORMUL 5 HOH *361(H2 O) HELIX 1 1 SER A 20 ARG A 32 1 13 HELIX 2 2 ARG A 34 ALA A 36 5 3 HELIX 3 3 GLU A 39 LEU A 58 1 20 HELIX 4 4 PRO A 68 ARG A 81 1 14 HELIX 5 5 VAL A 85 ARG A 100 1 16 HELIX 6 6 PRO A 107 ASP A 109 5 3 HELIX 7 7 ASN A 111 GLY A 128 1 18 HELIX 8 8 ARG A 139 GLU A 150 1 12 HELIX 9 9 CYS A 155 THR A 170 1 16 HELIX 10 10 ILE A 174 ARG A 179 1 6 HELIX 11 11 LEU A 215 SER A 226 1 12 HELIX 12 12 THR A 258 TYR A 273 1 16 HELIX 13 13 SER A 290 ARG A 301 1 12 HELIX 14 14 ILE A 306 GLY A 313 5 8 HELIX 15 15 VAL A 318 ILE A 325 1 8 HELIX 16 16 ALA A 334 LEU A 339 1 6 HELIX 17 17 ASP B 21 ARG B 32 1 12 HELIX 18 18 ARG B 34 ALA B 36 5 3 HELIX 19 19 GLU B 39 ASN B 59 1 21 HELIX 20 20 PRO B 68 ALA B 80 1 13 HELIX 21 21 VAL B 85 SER B 102 1 18 HELIX 22 22 PRO B 107 ASP B 109 5 3 HELIX 23 23 ASN B 111 ASP B 126 1 16 HELIX 24 24 ARG B 139 ASN B 151 1 13 HELIX 25 25 CYS B 155 THR B 170 1 16 HELIX 26 26 ILE B 174 ARG B 179 1 6 HELIX 27 27 VAL B 182 ASP B 184 5 3 HELIX 28 28 LEU B 215 SER B 228 1 14 HELIX 29 29 THR B 258 TYR B 273 1 16 HELIX 30 30 SER B 290 ARG B 301 1 12 HELIX 31 31 ILE B 306 GLY B 313 1 8 HELIX 32 32 VAL B 318 ASN B 323 1 6 HELIX 33 33 ALA B 334 LEU B 338 1 5 SHEET 1 A 2 ARG A 241 ARG A 243 0 SHEET 2 A 2 VAL A 247 ALA A 249 -1 N ALA A 249 O ARG A 241 SHEET 1 B 3 ILE B 185 ARG B 187 0 SHEET 2 B 3 MET B 193 ILE B 197 -1 N LEU B 194 O SER B 186 SHEET 3 B 3 VAL B 209 ALA B 212 -1 N LYS B 211 O ILE B 195 SHEET 1 C 2 ILE A 185 ASP A 189 0 SHEET 2 C 2 ARG A 192 ILE A 195 -1 N LEU A 194 O SER A 186 CISPEP 1 PHE A 64 PRO A 65 0 0.42 CISPEP 2 PHE B 64 PRO B 65 0 -0.56 SITE 1 CIA 5 ARG A 173 HIS A 289 ARG A 292 TRP A 315 SITE 2 CIA 5 TYR A 324 SITE 1 CIB 5 ARG B 173 HIS B 289 ARG B 292 TRP B 315 SITE 2 CIB 5 TYR B 324 CRYST1 106.900 122.500 180.000 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008163 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005556 0.00000