PDB Short entry for 2CS4 HEADER STRUCTURAL GENOMICS, SIGNALING PROTEIN 20-MAY-05 2CS4 TITLE SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF CHROMOSOME 12 OPEN READING TITLE 2 FRAME 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN C12ORF2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RA DOMAIN; COMPND 5 SYNONYM: CARCINOMA ASSOCIATED PROTEIN HOJ-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C12ORF2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041129-07; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS GTP BINDING, UBIQUITIN FOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CS4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CS4 1 VERSN REVDAT 1 20-NOV-05 2CS4 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF N-TERMINAL DOMAIN OF CHROMOSOME 12 JRNL TITL 2 OPEN READING FRAME 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CS4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024561. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.99MM RA DOMAIN U-13C, 15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 43 150.26 -35.39 REMARK 500 1 ARG A 54 39.05 35.01 REMARK 500 1 TYR A 76 42.67 -108.79 REMARK 500 2 ARG A 43 142.78 -37.44 REMARK 500 2 ARG A 54 33.61 35.75 REMARK 500 3 GLU A 64 177.33 -59.41 REMARK 500 3 THR A 87 79.01 -113.70 REMARK 500 3 PRO A 92 93.29 -69.78 REMARK 500 3 SER A 94 -52.41 -125.91 REMARK 500 4 GLN A 31 -72.05 -63.78 REMARK 500 4 GLU A 32 -32.77 -35.00 REMARK 500 4 ARG A 43 108.10 -49.79 REMARK 500 4 ARG A 54 41.04 37.96 REMARK 500 4 ASP A 55 40.00 71.04 REMARK 500 4 PRO A 89 95.86 -69.77 REMARK 500 5 SER A 3 -53.14 -126.70 REMARK 500 5 SER A 5 -64.00 -96.68 REMARK 500 5 THR A 44 148.24 -34.27 REMARK 500 5 ARG A 46 118.81 -160.94 REMARK 500 5 ARG A 54 41.78 34.46 REMARK 500 5 TYR A 76 42.91 -108.24 REMARK 500 6 ARG A 54 42.77 36.17 REMARK 500 6 SER A 69 -33.00 -39.26 REMARK 500 6 ASN A 71 -34.37 -34.38 REMARK 500 6 PRO A 89 98.51 -69.78 REMARK 500 6 PRO A 92 -177.61 -69.73 REMARK 500 7 SER A 3 117.19 -166.84 REMARK 500 7 TRP A 13 106.39 -59.99 REMARK 500 7 ARG A 46 109.26 -58.28 REMARK 500 7 ARG A 54 42.00 34.36 REMARK 500 9 SER A 6 116.48 -34.92 REMARK 500 9 SER A 94 129.35 -170.16 REMARK 500 10 SER A 3 124.41 -38.89 REMARK 500 10 VAL A 33 -70.59 -86.34 REMARK 500 10 TYR A 76 43.91 -106.01 REMARK 500 10 PRO A 89 98.09 -69.76 REMARK 500 10 SER A 90 48.11 34.37 REMARK 500 11 ARG A 46 99.98 -60.51 REMARK 500 11 TYR A 76 42.66 -103.57 REMARK 500 11 PRO A 92 91.02 -69.76 REMARK 500 12 SER A 2 155.21 -48.47 REMARK 500 12 ASP A 15 30.95 71.19 REMARK 500 12 THR A 44 -70.74 -56.21 REMARK 500 12 THR A 87 118.54 -170.04 REMARK 500 12 SER A 94 105.15 -45.50 REMARK 500 13 THR A 28 104.95 -49.63 REMARK 500 13 ARG A 54 45.23 39.84 REMARK 500 14 VAL A 33 -72.58 -74.76 REMARK 500 15 ARG A 54 25.02 49.18 REMARK 500 15 ASP A 55 32.37 73.42 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002022477.1 RELATED DB: TARGETDB DBREF 2CS4 A 8 89 UNP Q8NHQ8 RASF8_HUMAN 1 82 SEQADV 2CS4 GLY A 1 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 2 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 3 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 GLY A 4 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 5 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 6 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 GLY A 7 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 90 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 GLY A 91 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 PRO A 92 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 93 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 SER A 94 UNP Q8NHQ8 CLONING ARTIFACT SEQADV 2CS4 GLY A 95 UNP Q8NHQ8 CLONING ARTIFACT SEQRES 1 A 95 GLY SER SER GLY SER SER GLY MET GLU LEU LYS VAL TRP SEQRES 2 A 95 VAL ASP GLY VAL GLN ARG ILE VAL CYS GLY VAL THR GLU SEQRES 3 A 95 VAL THR THR CYS GLN GLU VAL VAL ILE ALA LEU ALA GLN SEQRES 4 A 95 ALA ILE GLY ARG THR GLY ARG TYR THR LEU ILE GLU LYS SEQRES 5 A 95 TRP ARG ASP THR GLU ARG HIS LEU ALA PRO HIS GLU ASN SEQRES 6 A 95 PRO ILE ILE SER LEU ASN LYS TRP GLY GLN TYR ALA SER SEQRES 7 A 95 ASP VAL GLN LEU ILE LEU ARG ARG THR GLY PRO SER GLY SEQRES 8 A 95 PRO SER SER GLY HELIX 1 1 THR A 29 GLY A 42 1 14 HELIX 2 2 ASN A 65 LYS A 72 1 8 HELIX 3 3 TRP A 73 ALA A 77 5 5 SHEET 1 A 5 VAL A 17 ARG A 19 0 SHEET 2 A 5 VAL A 12 VAL A 14 -1 N VAL A 14 O VAL A 17 SHEET 3 A 5 GLN A 81 GLY A 88 1 O LEU A 82 N TRP A 13 SHEET 4 A 5 ARG A 46 TRP A 53 -1 N LYS A 52 O GLN A 81 SHEET 5 A 5 THR A 56 HIS A 59 -1 O ARG A 58 N GLU A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000