PDB Short entry for 2CTP HEADER CHAPERONE 24-MAY-05 2CTP TITLE SOLUTION STRUCTURE OF J-DOMAIN FROM HUMAN DNAJ SUBFAMILY B MENBER 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY B MEMBER 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: J-DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNAJB12; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040315-96; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS DNAJ, J-DOMAIN, CHAPERONE, HELIX-TURN-HELIX, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CTP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CTP 1 VERSN REVDAT 1 24-NOV-05 2CTP 0 JRNL AUTH N.KOBAYASHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF J-DOMAIN FROM HUMAN DNAJ SUBFAMILY B JRNL TITL 2 MENBER 12 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CTP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024608. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.36MM DNAJ3 DOMAIN U-13C,15N; REMARK 210 20MM PHOSPHATE BUFFER NA (PH7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TOSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 151.03 -40.10 REMARK 500 1 SER A 5 43.03 37.61 REMARK 500 1 ARG A 30 -32.98 -36.85 REMARK 500 1 PHE A 71 -66.48 -104.62 REMARK 500 2 ASP A 8 149.79 -36.52 REMARK 500 2 ARG A 30 -27.91 -37.75 REMARK 500 2 LYS A 39 -63.84 -99.60 REMARK 500 2 HIS A 41 37.21 -89.43 REMARK 500 2 SER A 60 -39.16 -37.50 REMARK 500 2 PHE A 71 -69.08 -104.15 REMARK 500 2 SER A 73 43.94 35.62 REMARK 500 3 SER A 3 42.04 -102.03 REMARK 500 3 ARG A 30 -32.94 -34.54 REMARK 500 3 VAL A 58 -71.33 -61.00 REMARK 500 3 SER A 60 -27.30 -38.37 REMARK 500 3 PHE A 71 -73.96 -108.55 REMARK 500 4 SER A 3 -64.71 -90.03 REMARK 500 4 ARG A 30 -33.30 -34.52 REMARK 500 4 GLU A 47 -30.55 -39.29 REMARK 500 4 ILE A 52 -70.81 -45.99 REMARK 500 4 VAL A 58 -71.34 -52.35 REMARK 500 4 SER A 60 -32.08 -37.62 REMARK 500 4 PHE A 71 -73.93 -82.77 REMARK 500 5 LYS A 25 -70.38 -72.02 REMARK 500 5 ARG A 30 -32.49 -34.79 REMARK 500 5 PRO A 43 -167.50 -69.83 REMARK 500 5 GLU A 47 -29.88 -39.40 REMARK 500 5 ILE A 52 -70.91 -49.95 REMARK 500 5 VAL A 58 -71.14 -65.30 REMARK 500 5 SER A 60 -26.95 -39.17 REMARK 500 5 PHE A 71 -72.98 -70.09 REMARK 500 5 PRO A 75 -175.16 -69.74 REMARK 500 6 SER A 2 -64.57 -99.19 REMARK 500 6 ARG A 30 -32.65 -34.77 REMARK 500 6 SER A 60 -34.61 -36.20 REMARK 500 6 PHE A 71 -66.76 -106.31 REMARK 500 7 ARG A 30 -30.35 -37.23 REMARK 500 7 PRO A 43 -168.24 -69.72 REMARK 500 7 PRO A 75 94.87 -69.80 REMARK 500 8 ARG A 30 -28.66 -37.31 REMARK 500 8 PHE A 71 -70.92 -88.44 REMARK 500 8 SER A 73 97.78 -52.80 REMARK 500 8 PRO A 75 2.83 -69.78 REMARK 500 9 SER A 5 42.90 -83.52 REMARK 500 9 ARG A 30 -29.05 -37.00 REMARK 500 9 GLU A 47 -30.51 -39.60 REMARK 500 9 ARG A 65 -60.36 -91.12 REMARK 500 9 SER A 76 -51.16 -121.17 REMARK 500 10 SER A 2 152.22 -40.31 REMARK 500 10 SER A 20 -177.94 -64.94 REMARK 500 REMARK 500 THIS ENTRY HAS 104 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000182.1 RELATED DB: TARGETDB DBREF 2CTP A 8 72 UNP Q9NXW2 DNJBC_HUMAN 110 174 SEQADV 2CTP GLY A 1 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 2 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 3 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP GLY A 4 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 5 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 6 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP GLY A 7 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 73 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP GLY A 74 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP PRO A 75 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 76 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP SER A 77 UNP Q9NXW2 CLONING ARTIFACT SEQADV 2CTP GLY A 78 UNP Q9NXW2 CLONING ARTIFACT SEQRES 1 A 78 GLY SER SER GLY SER SER GLY ASP TYR TYR GLU ILE LEU SEQRES 2 A 78 GLY VAL SER ARG GLY ALA SER ASP GLU ASP LEU LYS LYS SEQRES 3 A 78 ALA TYR ARG ARG LEU ALA LEU LYS PHE HIS PRO ASP LYS SEQRES 4 A 78 ASN HIS ALA PRO GLY ALA THR GLU ALA PHE LYS ALA ILE SEQRES 5 A 78 GLY THR ALA TYR ALA VAL LEU SER ASN PRO GLU LYS ARG SEQRES 6 A 78 LYS GLN TYR ASP GLN PHE GLY SER GLY PRO SER SER GLY HELIX 1 1 ASP A 8 GLY A 14 1 7 HELIX 2 2 SER A 20 LEU A 33 1 14 HELIX 3 3 ALA A 42 SER A 60 1 19 HELIX 4 4 ASN A 61 PHE A 71 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000