PDB Short entry for 2CWM HEADER METAL BINDING PROTEIN 22-JUN-05 2CWM TITLE NATIVE CRYSTAL STRUCTURE OF NO RELEASING INDUCTIVE LECTIN FROM SEEDS TITLE 2 OF THE CANAVALIA MARITIMA (CONM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA MARITIMA; SOURCE 3 ORGANISM_TAXID: 3825; SOURCE 4 TISSUE: SEEDS KEYWDS LECTIN, CANAVALIA MARITIMA, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.S.CAVADA,W.F.DE AZEVEDO JR.,A.M.S.ASSREUY,D.N.CRIDDLE, AUTHOR 2 C.A.A.GADELHA,P.DELATORRE,E.P.SOUZA,B.A.M.ROCHA,T.SANTI-GADELHA, AUTHOR 3 F.B.M.B.MORENO REVDAT 5 13-MAR-24 2CWM 1 REMARK LINK REVDAT 4 11-OCT-17 2CWM 1 REMARK REVDAT 3 13-JUL-11 2CWM 1 VERSN REVDAT 2 24-FEB-09 2CWM 1 VERSN REVDAT 1 17-JAN-06 2CWM 0 JRNL AUTH C.A.A.GADELHA,F.B.M.B.MORENO,T.SANTI-GADELHA,J.B.CAJAZEIRAS, JRNL AUTH 2 B.A.M.ROCHA,A.M.S.ASSREUY,M.R.LIMA MOTA,N.V.PINTO, JRNL AUTH 3 A.V.PASSOS MEIRELES,J.C.BORGES,B.T.FREITAS,F.CANDURI, JRNL AUTH 4 E.P.SOUZA,P.DELATORRE,D.N.CRIDDLE,W.F.DE AZEVEDO JR., JRNL AUTH 5 B.S.CAVADA JRNL TITL NATIVE CRYSTAL STRUCTURE OF A NITRIC OXIDE-RELEASING LECTIN JRNL TITL 2 FROM THE SEEDS OF CANAVALIA MARITIMA JRNL REF J.STRUCT.BIOL. V. 152 185 2005 JRNL REFN ISSN 1047-8477 JRNL PMID 16337811 JRNL DOI 10.1016/J.JSB.2005.07.012 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 32507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1713 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3682 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3210 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5018 ; 2.052 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7500 ; 0.974 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ;12.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.937 ;24.805 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;15.976 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;22.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4154 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 730 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 786 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3426 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1836 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2430 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 92 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.556 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2388 ; 1.257 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 968 ; 0.304 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3810 ; 2.025 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1458 ; 3.096 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1208 ; 4.288 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000024707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4270 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 25.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES-NA, AMMONIUM SULFATE, PEG 400, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.95800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.80850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.95800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.80850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 135.83200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 309 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 291 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 331 O HOH D 441 0.97 REMARK 500 CB THR D 74 O HOH D 439 1.59 REMARK 500 CB SER A 113 O HOH A 454 1.81 REMARK 500 OG SER D 160 OD1 ASN D 162 2.09 REMARK 500 O HOH A 373 O HOH A 426 2.10 REMARK 500 O ASP A 80 O HOH A 443 2.13 REMARK 500 NH2 ARG A 60 O HOH A 427 2.14 REMARK 500 O LYS A 59 O HOH A 426 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 426 O HOH A 427 2755 2.00 REMARK 500 OG SER D 66 ND2 ASN D 118 2755 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG D 172 CD ARG D 172 NE -0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 64 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 ASP A 71 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 208 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 LYS D 30 CD - CE - NZ ANGL. DEV. = 17.8 DEGREES REMARK 500 VAL D 64 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG D 172 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG D 172 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP D 192 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 208 N - CA - C ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG D 228 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG D 228 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP D 235 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 36.18 -91.77 REMARK 500 LYS A 30 19.52 60.00 REMARK 500 ASN A 118 -35.41 -27.01 REMARK 500 SER A 119 -154.46 -96.50 REMARK 500 THR A 120 -162.98 -51.29 REMARK 500 THR A 150 -26.61 40.84 REMARK 500 SER D 21 31.41 -91.24 REMARK 500 SER D 119 -149.62 -109.93 REMARK 500 THR D 120 -128.82 -60.72 REMARK 500 HIS D 121 47.00 -93.35 REMARK 500 ASP D 136 77.06 -113.74 REMARK 500 THR D 150 -26.76 -7.08 REMARK 500 SER D 168 51.46 39.07 REMARK 500 SER D 225 32.71 -99.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 122 THR A 123 -136.10 REMARK 500 THR A 123 ASN A 124 148.64 REMARK 500 THR A 148 GLY A 149 141.84 REMARK 500 ALA A 207 ASP A 208 -59.95 REMARK 500 ASN D 118 SER D 119 129.54 REMARK 500 GLU D 122 THR D 123 -144.19 REMARK 500 GLY D 149 THR D 150 -149.24 REMARK 500 ALA D 207 ASP D 208 -41.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 207 -16.96 REMARK 500 ALA D 207 -12.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 240 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE1 REMARK 620 2 ASP A 10 OD2 96.8 REMARK 620 3 ASP A 19 OD1 165.0 96.3 REMARK 620 4 HIS A 24 NE2 97.7 87.1 90.3 REMARK 620 5 HOH A 430 O 89.3 172.7 78.2 88.2 REMARK 620 6 HOH A 468 O 82.7 91.0 89.8 178.1 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD2 REMARK 620 2 ASP A 10 OD1 51.9 REMARK 620 3 TYR A 12 O 111.3 75.2 REMARK 620 4 ASN A 14 OD1 162.1 146.0 80.1 REMARK 620 5 ASP A 19 OD2 76.6 109.6 85.4 91.1 REMARK 620 6 HOH A 429 O 81.5 118.0 166.2 86.3 93.0 REMARK 620 7 HOH A 451 O 110.2 74.7 90.5 82.7 173.0 89.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 239 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE1 REMARK 620 2 ASP D 10 OD2 95.7 REMARK 620 3 ASP D 19 OD1 166.9 97.2 REMARK 620 4 HIS D 24 NE2 93.2 85.3 90.1 REMARK 620 5 HOH D 421 O 86.8 95.6 89.7 179.1 REMARK 620 6 HOH D 466 O 87.1 174.7 80.2 90.1 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 ASP D 10 OD2 51.9 REMARK 620 3 TYR D 12 O 74.4 110.9 REMARK 620 4 ASN D 14 OD1 144.7 163.3 79.2 REMARK 620 5 ASP D 19 OD2 110.0 78.0 84.7 90.2 REMARK 620 6 HOH D 289 O 117.0 77.6 168.6 90.8 90.0 REMARK 620 7 HOH D 416 O 74.5 108.4 92.3 83.7 173.6 92.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 240 DBREF 2CWM A 1 237 UNP P81364 CONA_CANMR 1 236 DBREF 2CWM D 1 237 UNP P81364 CONA_CANMR 1 236 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL GLY LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN GLY ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE VAL PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER SER ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 D 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 D 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 D 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 D 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 D 237 ILE TYR ASN SER VAL GLY LYS ARG LEU SER ALA VAL VAL SEQRES 6 D 237 SER TYR PRO ASN GLY ASP SER ALA THR VAL SER TYR ASP SEQRES 7 D 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 D 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 D 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 D 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE VAL PHE SEQRES 11 D 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 D 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 D 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 D 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 D 237 GLU SER SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 D 237 THR PHE LEU ILE LYS SER SER ASP SER HIS PRO ALA ASP SEQRES 17 D 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 D 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 D 237 ASP ALA ASN HET CA A1003 1 HET MN A 240 1 HET CA D1003 1 HET MN D 239 1 HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION FORMUL 3 CA 2(CA 2+) FORMUL 4 MN 2(MN 2+) FORMUL 7 HOH *234(H2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 VAL A 84 5 5 HELIX 3 3 THR A 226 LEU A 230 5 5 HELIX 4 4 ASN D 14 GLY D 18 5 5 HELIX 5 5 ASP D 80 VAL D 84 5 5 HELIX 6 6 THR D 226 LEU D 230 5 5 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 27 O LYS A 36 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 A 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 A 7 TRP A 88 SER A 96 -1 N ARG A 90 O SER A 215 SHEET 6 A 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 B 6 LYS A 36 LYS A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 27 O LYS A 36 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 B 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 B 6 TRP A 88 SER A 96 -1 N ARG A 90 O SER A 215 SHEET 6 B 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 C12 SER A 72 ASP A 78 0 SHEET 2 C12 ARG A 60 SER A 66 -1 N ALA A 63 O VAL A 75 SHEET 3 C12 VAL A 47 ASN A 55 -1 N HIS A 51 O VAL A 64 SHEET 4 C12 ALA A 186 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 C12 THR A 105 SER A 117 -1 N LYS A 116 O VAL A 188 SHEET 6 C12 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 7 C12 THR D 123 PHE D 130 -1 O HIS D 127 N HIS A 127 SHEET 8 C12 THR D 105 LYS D 116 -1 N LEU D 115 O ASN D 124 SHEET 9 C12 VAL D 188 LEU D 198 -1 O VAL D 188 N LYS D 116 SHEET 10 C12 VAL D 47 ASN D 55 -1 N ILE D 52 O ALA D 193 SHEET 11 C12 ARG D 60 SER D 66 -1 O SER D 62 N ILE D 53 SHEET 12 C12 SER D 72 ASP D 78 -1 O TYR D 77 N LEU D 61 SHEET 1 D 8 THR A 147 THR A 148 0 SHEET 2 D 8 LEU A 154 GLU A 155 -1 O GLU A 155 N THR A 147 SHEET 3 D 8 THR A 105 SER A 117 -1 N ILE A 106 O LEU A 154 SHEET 4 D 8 THR A 123 PHE A 130 -1 O ASN A 124 N LEU A 115 SHEET 5 D 8 THR D 123 PHE D 130 -1 O HIS D 127 N HIS A 127 SHEET 6 D 8 THR D 105 LYS D 116 -1 N LEU D 115 O ASN D 124 SHEET 7 D 8 ASN D 153 GLU D 155 -1 O LEU D 154 N ILE D 106 SHEET 8 D 8 THR D 147 GLY D 149 -1 N THR D 147 O GLU D 155 SHEET 1 E 7 LYS D 36 LYS D 39 0 SHEET 2 E 7 HIS D 24 ILE D 29 -1 N ILE D 27 O LYS D 36 SHEET 3 E 7 ILE D 4 ASP D 10 -1 N ALA D 6 O ASP D 28 SHEET 4 E 7 GLY D 209 ASN D 216 -1 O ILE D 210 N LEU D 9 SHEET 5 E 7 TRP D 88 SER D 96 -1 N SER D 94 O ALA D 211 SHEET 6 E 7 VAL D 170 PHE D 175 -1 O PHE D 175 N VAL D 91 SHEET 7 E 7 LEU D 140 GLY D 144 -1 N GLN D 143 O ARG D 172 SHEET 1 F 6 LYS D 36 LYS D 39 0 SHEET 2 F 6 HIS D 24 ILE D 29 -1 N ILE D 27 O LYS D 36 SHEET 3 F 6 ILE D 4 ASP D 10 -1 N ALA D 6 O ASP D 28 SHEET 4 F 6 GLY D 209 ASN D 216 -1 O ILE D 210 N LEU D 9 SHEET 5 F 6 TRP D 88 SER D 96 -1 N SER D 94 O ALA D 211 SHEET 6 F 6 VAL D 179 HIS D 180 -1 O VAL D 179 N VAL D 89 LINK OE1 GLU A 8 MN MN A 240 1555 1555 2.25 LINK OD2 ASP A 10 MN MN A 240 1555 1555 2.05 LINK OD2 ASP A 10 CA CA A1003 1555 1555 2.46 LINK OD1 ASP A 10 CA CA A1003 1555 1555 2.60 LINK O TYR A 12 CA CA A1003 1555 1555 2.30 LINK OD1 ASN A 14 CA CA A1003 1555 1555 2.43 LINK OD1 ASP A 19 MN MN A 240 1555 1555 2.36 LINK OD2 ASP A 19 CA CA A1003 1555 1555 2.30 LINK NE2 HIS A 24 MN MN A 240 1555 1555 2.16 LINK MN MN A 240 O HOH A 430 1555 1555 2.20 LINK MN MN A 240 O HOH A 468 1555 1555 1.87 LINK O HOH A 429 CA CA A1003 1555 1555 2.40 LINK O HOH A 451 CA CA A1003 1555 1555 2.46 LINK OE1 GLU D 8 MN MN D 239 1555 1555 2.14 LINK OD2 ASP D 10 MN MN D 239 1555 1555 2.15 LINK OD1 ASP D 10 CA CA D1003 1555 1555 2.46 LINK OD2 ASP D 10 CA CA D1003 1555 1555 2.47 LINK O TYR D 12 CA CA D1003 1555 1555 2.24 LINK OD1 ASN D 14 CA CA D1003 1555 1555 2.44 LINK OD1 ASP D 19 MN MN D 239 1555 1555 2.26 LINK OD2 ASP D 19 CA CA D1003 1555 1555 2.37 LINK NE2 HIS D 24 MN MN D 239 1555 1555 2.33 LINK MN MN D 239 O HOH D 421 1555 1555 2.11 LINK MN MN D 239 O HOH D 466 1555 1555 2.13 LINK O HOH D 289 CA CA D1003 1555 1555 2.50 LINK O HOH D 416 CA CA D1003 1555 1555 2.39 SITE 1 AC1 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC1 6 HOH A 429 HOH A 451 SITE 1 AC2 6 ASP D 10 TYR D 12 ASN D 14 ASP D 19 SITE 2 AC2 6 HOH D 289 HOH D 416 SITE 1 AC3 6 GLU D 8 ASP D 10 ASP D 19 HIS D 24 SITE 2 AC3 6 HOH D 421 HOH D 466 SITE 1 AC4 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC4 6 HOH A 430 HOH A 468 CRYST1 67.916 97.617 71.021 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014080 0.00000