PDB Short entry for 2D1P HEADER TRANSLATION 30-AUG-05 2D1P TITLE CRYSTAL STRUCTURE OF HETEROHEXAMERIC TUSBCD PROTEINS, WHICH ARE TITLE 2 CRUCIAL FOR THE TRNA MODIFICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL UPF0163 PROTEIN YHEN; COMPND 3 CHAIN: A, D, G; COMPND 4 SYNONYM: TUSD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HYPOTHETICAL UPF0116 PROTEIN YHEM; COMPND 8 CHAIN: B, E, H; COMPND 9 SYNONYM: TUSC; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HYPOTHETICAL PROTEIN YHEL; COMPND 13 CHAIN: C, F, I; COMPND 14 SYNONYM: TUSB; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YHEN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE80L; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 GENE: YHEM; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PQE80L; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 21 ORGANISM_TAXID: 562; SOURCE 22 GENE: YHEL; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PQE80L KEYWDS TRNA MODIFICATION, SULFUR TRANSFER, STRUCTURAL GENOMICS, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR T.NUMATA,S.FUKAI,Y.IKEUCHI,T.SUZUKI,O.NUREKI REVDAT 3 13-MAR-24 2D1P 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D1P 1 VERSN REVDAT 1 28-FEB-06 2D1P 0 JRNL AUTH T.NUMATA,S.FUKAI,Y.IKEUCHI,T.SUZUKI,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR SULFUR RELAY TO RNA MEDIATED BY JRNL TITL 2 HETEROHEXAMERIC TUSBCD COMPLEX JRNL REF STRUCTURE V. 14 357 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16472754 JRNL DOI 10.1016/J.STR.2005.11.009 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.006 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.11000 REMARK 3 B22 (A**2) : -4.11000 REMARK 3 B33 (A**2) : 8.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000024878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979521, 0.979829, 0.9830 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.9-1.1M LITHIUM SULFATE, 9MM MG REMARK 280 -ACETATE, 45MM NA-CACODYLATE BUFFER (PH 6.8), 2.5% TERT-BUTANOL, REMARK 280 AND 10MM TRIS-HCL BUFFER (PH8.5), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.84300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.69600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.69600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.92150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.69600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.69600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.76450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.69600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.69600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.92150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.69600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.69600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.76450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.84300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 141.39200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 141.39200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.84300 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET D -11 REMARK 465 ARG D -10 REMARK 465 GLY D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 MET E 1 REMARK 465 MET G -11 REMARK 465 ARG G -10 REMARK 465 GLY G -9 REMARK 465 SER G -8 REMARK 465 HIS G -7 REMARK 465 HIS G -6 REMARK 465 HIS G -5 REMARK 465 HIS G -4 REMARK 465 HIS G -3 REMARK 465 HIS G -2 REMARK 465 MET H 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 -140.15 57.22 REMARK 500 ASN A 102 27.12 -150.07 REMARK 500 HIS B 13 -43.58 72.99 REMARK 500 ALA B 41 -136.64 50.59 REMARK 500 GLN C 31 -135.00 54.58 REMARK 500 PRO C 51 39.16 -70.72 REMARK 500 ARG D 41 -143.18 59.95 REMARK 500 ASN D 102 22.00 -144.27 REMARK 500 HIS E 13 -39.30 71.64 REMARK 500 ALA E 41 -135.94 45.95 REMARK 500 TYR E 71 -166.54 -115.94 REMARK 500 ASP E 72 -88.97 -58.02 REMARK 500 ILE E 73 91.76 5.99 REMARK 500 GLN F 31 -132.34 51.04 REMARK 500 PRO F 51 48.07 -70.30 REMARK 500 ARG G 41 -141.29 57.73 REMARK 500 ASN G 102 23.89 -146.05 REMARK 500 HIS H 13 -40.00 73.09 REMARK 500 ALA H 41 -139.22 47.36 REMARK 500 GLN I 31 -131.90 49.60 REMARK 500 PRO I 51 48.02 -73.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR H 113 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 301 DBREF 2D1P A 1 128 UNP P45532 YHEN_ECOLI 1 128 DBREF 2D1P D 1 128 UNP P45532 YHEN_ECOLI 1 128 DBREF 2D1P G 1 128 UNP P45532 YHEN_ECOLI 1 128 DBREF 2D1P B 1 119 UNP P45531 YHEM_ECOLI 1 119 DBREF 2D1P E 1 119 UNP P45531 YHEM_ECOLI 1 119 DBREF 2D1P H 1 119 UNP P45531 YHEM_ECOLI 1 119 DBREF 2D1P C 1 95 UNP P45530 YHEL_ECOLI 1 95 DBREF 2D1P F 1 95 UNP P45530 YHEL_ECOLI 1 95 DBREF 2D1P I 1 95 UNP P45530 YHEL_ECOLI 1 95 SEQADV 2D1P MET A -11 UNP P45532 EXPRESSION TAG SEQADV 2D1P ARG A -10 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY A -9 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER A -8 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -7 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -6 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -5 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -4 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -3 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS A -2 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY A -1 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER A 0 UNP P45532 EXPRESSION TAG SEQADV 2D1P MET D -11 UNP P45532 EXPRESSION TAG SEQADV 2D1P ARG D -10 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY D -9 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER D -8 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -7 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -6 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -5 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -4 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -3 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS D -2 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY D -1 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER D 0 UNP P45532 EXPRESSION TAG SEQADV 2D1P MET G -11 UNP P45532 EXPRESSION TAG SEQADV 2D1P ARG G -10 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY G -9 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER G -8 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -7 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -6 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -5 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -4 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -3 UNP P45532 EXPRESSION TAG SEQADV 2D1P HIS G -2 UNP P45532 EXPRESSION TAG SEQADV 2D1P GLY G -1 UNP P45532 EXPRESSION TAG SEQADV 2D1P SER G 0 UNP P45532 EXPRESSION TAG SEQRES 1 A 140 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 140 ARG PHE ALA ILE VAL VAL THR GLY PRO ALA TYR GLY THR SEQRES 3 A 140 GLN GLN ALA SER SER ALA PHE GLN PHE ALA GLN ALA LEU SEQRES 4 A 140 ILE ALA ASP GLY HIS GLU LEU SER SER VAL PHE PHE TYR SEQRES 5 A 140 ARG GLU GLY VAL TYR ASN ALA ASN GLN LEU THR SER PRO SEQRES 6 A 140 ALA SER ASP GLU PHE ASP LEU VAL ARG ALA TRP GLN GLN SEQRES 7 A 140 LEU ASN ALA GLN HIS GLY VAL ALA LEU ASN ILE CYS VAL SEQRES 8 A 140 ALA ALA ALA LEU ARG ARG GLY VAL VAL ASP GLU THR GLU SEQRES 9 A 140 ALA GLY ARG LEU GLY LEU ALA SER SER ASN LEU GLN GLN SEQRES 10 A 140 GLY PHE THR LEU SER GLY LEU GLY ALA LEU ALA GLU ALA SEQRES 11 A 140 SER LEU THR CYS ASP ARG VAL VAL GLN PHE SEQRES 1 B 119 MET LYS ARG ILE ALA PHE VAL PHE SER THR ALA PRO HIS SEQRES 2 B 119 GLY THR ALA ALA GLY ARG GLU GLY LEU ASP ALA LEU LEU SEQRES 3 B 119 ALA THR SER ALA LEU THR ASP ASP LEU ALA VAL PHE PHE SEQRES 4 B 119 ILE ALA ASP GLY VAL PHE GLN LEU LEU PRO GLY GLN LYS SEQRES 5 B 119 PRO ASP ALA VAL LEU ALA ARG ASP TYR ILE ALA THR PHE SEQRES 6 B 119 LYS LEU LEU GLY LEU TYR ASP ILE GLU GLN CYS TRP VAL SEQRES 7 B 119 CYS ALA ALA SER LEU ARG GLU ARG GLY LEU ASP PRO GLN SEQRES 8 B 119 THR PRO PHE VAL VAL GLU ALA THR PRO LEU GLU ALA ASP SEQRES 9 B 119 ALA LEU ARG ARG GLU LEU ALA ASN TYR ASP VAL ILE LEU SEQRES 10 B 119 ARG PHE SEQRES 1 C 95 MET LEU HIS THR LEU HIS ARG SER PRO TRP LEU THR ASP SEQRES 2 C 95 PHE ALA ALA LEU LEU ARG LEU LEU SER GLU GLY ASP GLU SEQRES 3 C 95 LEU LEU LEU LEU GLN ASP GLY VAL THR ALA ALA VAL ASP SEQRES 4 C 95 GLY ASN ARG TYR LEU GLU SER LEU ARG ASN ALA PRO ILE SEQRES 5 C 95 LYS VAL TYR ALA LEU ASN GLU ASP LEU ILE ALA ARG GLY SEQRES 6 C 95 LEU THR GLY GLN ILE SER ASN ASP ILE ILE LEU ILE ASP SEQRES 7 C 95 TYR THR ASP PHE VAL ARG LEU THR VAL LYS HIS PRO SER SEQRES 8 C 95 GLN MET ALA TRP SEQRES 1 D 140 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 D 140 ARG PHE ALA ILE VAL VAL THR GLY PRO ALA TYR GLY THR SEQRES 3 D 140 GLN GLN ALA SER SER ALA PHE GLN PHE ALA GLN ALA LEU SEQRES 4 D 140 ILE ALA ASP GLY HIS GLU LEU SER SER VAL PHE PHE TYR SEQRES 5 D 140 ARG GLU GLY VAL TYR ASN ALA ASN GLN LEU THR SER PRO SEQRES 6 D 140 ALA SER ASP GLU PHE ASP LEU VAL ARG ALA TRP GLN GLN SEQRES 7 D 140 LEU ASN ALA GLN HIS GLY VAL ALA LEU ASN ILE CYS VAL SEQRES 8 D 140 ALA ALA ALA LEU ARG ARG GLY VAL VAL ASP GLU THR GLU SEQRES 9 D 140 ALA GLY ARG LEU GLY LEU ALA SER SER ASN LEU GLN GLN SEQRES 10 D 140 GLY PHE THR LEU SER GLY LEU GLY ALA LEU ALA GLU ALA SEQRES 11 D 140 SER LEU THR CYS ASP ARG VAL VAL GLN PHE SEQRES 1 E 119 MET LYS ARG ILE ALA PHE VAL PHE SER THR ALA PRO HIS SEQRES 2 E 119 GLY THR ALA ALA GLY ARG GLU GLY LEU ASP ALA LEU LEU SEQRES 3 E 119 ALA THR SER ALA LEU THR ASP ASP LEU ALA VAL PHE PHE SEQRES 4 E 119 ILE ALA ASP GLY VAL PHE GLN LEU LEU PRO GLY GLN LYS SEQRES 5 E 119 PRO ASP ALA VAL LEU ALA ARG ASP TYR ILE ALA THR PHE SEQRES 6 E 119 LYS LEU LEU GLY LEU TYR ASP ILE GLU GLN CYS TRP VAL SEQRES 7 E 119 CYS ALA ALA SER LEU ARG GLU ARG GLY LEU ASP PRO GLN SEQRES 8 E 119 THR PRO PHE VAL VAL GLU ALA THR PRO LEU GLU ALA ASP SEQRES 9 E 119 ALA LEU ARG ARG GLU LEU ALA ASN TYR ASP VAL ILE LEU SEQRES 10 E 119 ARG PHE SEQRES 1 F 95 MET LEU HIS THR LEU HIS ARG SER PRO TRP LEU THR ASP SEQRES 2 F 95 PHE ALA ALA LEU LEU ARG LEU LEU SER GLU GLY ASP GLU SEQRES 3 F 95 LEU LEU LEU LEU GLN ASP GLY VAL THR ALA ALA VAL ASP SEQRES 4 F 95 GLY ASN ARG TYR LEU GLU SER LEU ARG ASN ALA PRO ILE SEQRES 5 F 95 LYS VAL TYR ALA LEU ASN GLU ASP LEU ILE ALA ARG GLY SEQRES 6 F 95 LEU THR GLY GLN ILE SER ASN ASP ILE ILE LEU ILE ASP SEQRES 7 F 95 TYR THR ASP PHE VAL ARG LEU THR VAL LYS HIS PRO SER SEQRES 8 F 95 GLN MET ALA TRP SEQRES 1 G 140 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 G 140 ARG PHE ALA ILE VAL VAL THR GLY PRO ALA TYR GLY THR SEQRES 3 G 140 GLN GLN ALA SER SER ALA PHE GLN PHE ALA GLN ALA LEU SEQRES 4 G 140 ILE ALA ASP GLY HIS GLU LEU SER SER VAL PHE PHE TYR SEQRES 5 G 140 ARG GLU GLY VAL TYR ASN ALA ASN GLN LEU THR SER PRO SEQRES 6 G 140 ALA SER ASP GLU PHE ASP LEU VAL ARG ALA TRP GLN GLN SEQRES 7 G 140 LEU ASN ALA GLN HIS GLY VAL ALA LEU ASN ILE CYS VAL SEQRES 8 G 140 ALA ALA ALA LEU ARG ARG GLY VAL VAL ASP GLU THR GLU SEQRES 9 G 140 ALA GLY ARG LEU GLY LEU ALA SER SER ASN LEU GLN GLN SEQRES 10 G 140 GLY PHE THR LEU SER GLY LEU GLY ALA LEU ALA GLU ALA SEQRES 11 G 140 SER LEU THR CYS ASP ARG VAL VAL GLN PHE SEQRES 1 H 119 MET LYS ARG ILE ALA PHE VAL PHE SER THR ALA PRO HIS SEQRES 2 H 119 GLY THR ALA ALA GLY ARG GLU GLY LEU ASP ALA LEU LEU SEQRES 3 H 119 ALA THR SER ALA LEU THR ASP ASP LEU ALA VAL PHE PHE SEQRES 4 H 119 ILE ALA ASP GLY VAL PHE GLN LEU LEU PRO GLY GLN LYS SEQRES 5 H 119 PRO ASP ALA VAL LEU ALA ARG ASP TYR ILE ALA THR PHE SEQRES 6 H 119 LYS LEU LEU GLY LEU TYR ASP ILE GLU GLN CYS TRP VAL SEQRES 7 H 119 CYS ALA ALA SER LEU ARG GLU ARG GLY LEU ASP PRO GLN SEQRES 8 H 119 THR PRO PHE VAL VAL GLU ALA THR PRO LEU GLU ALA ASP SEQRES 9 H 119 ALA LEU ARG ARG GLU LEU ALA ASN TYR ASP VAL ILE LEU SEQRES 10 H 119 ARG PHE SEQRES 1 I 95 MET LEU HIS THR LEU HIS ARG SER PRO TRP LEU THR ASP SEQRES 2 I 95 PHE ALA ALA LEU LEU ARG LEU LEU SER GLU GLY ASP GLU SEQRES 3 I 95 LEU LEU LEU LEU GLN ASP GLY VAL THR ALA ALA VAL ASP SEQRES 4 I 95 GLY ASN ARG TYR LEU GLU SER LEU ARG ASN ALA PRO ILE SEQRES 5 I 95 LYS VAL TYR ALA LEU ASN GLU ASP LEU ILE ALA ARG GLY SEQRES 6 I 95 LEU THR GLY GLN ILE SER ASN ASP ILE ILE LEU ILE ASP SEQRES 7 I 95 TYR THR ASP PHE VAL ARG LEU THR VAL LYS HIS PRO SER SEQRES 8 I 95 GLN MET ALA TRP HET SO4 H 301 5 HETNAM SO4 SULFATE ION FORMUL 10 SO4 O4 S 2- FORMUL 11 HOH *284(H2 O) HELIX 1 1 GLN A 15 ASP A 30 1 16 HELIX 2 2 ARG A 41 ASN A 48 5 8 HELIX 3 3 ASP A 59 GLY A 72 1 14 HELIX 4 4 VAL A 79 ARG A 85 1 7 HELIX 5 5 ASP A 89 GLY A 97 1 9 HELIX 6 6 LEU A 112 CYS A 122 1 11 HELIX 7 7 ALA B 16 ALA B 30 1 15 HELIX 8 8 ALA B 41 LEU B 48 5 8 HELIX 9 9 LYS B 52 LEU B 57 5 6 HELIX 10 10 TYR B 61 THR B 64 5 4 HELIX 11 11 PHE B 65 TYR B 71 1 7 HELIX 12 12 ALA B 80 ARG B 86 1 7 HELIX 13 13 GLU B 102 ALA B 111 1 10 HELIX 14 14 SER C 8 THR C 12 5 5 HELIX 15 15 ASP C 13 LEU C 20 1 8 HELIX 16 16 GLN C 31 VAL C 38 5 8 HELIX 17 17 TYR C 43 ASN C 49 1 7 HELIX 18 18 ASN C 58 ARG C 64 1 7 HELIX 19 19 ASP C 78 HIS C 89 1 12 HELIX 20 20 GLN D 15 ASP D 30 1 16 HELIX 21 21 ARG D 41 ASN D 48 5 8 HELIX 22 22 ASP D 59 GLY D 72 1 14 HELIX 23 23 VAL D 79 ARG D 85 1 7 HELIX 24 24 ASP D 89 GLY D 97 1 9 HELIX 25 25 LEU D 112 CYS D 122 1 11 HELIX 26 26 ALA E 16 ALA E 30 1 15 HELIX 27 27 ALA E 41 LEU E 48 5 8 HELIX 28 28 LYS E 52 LEU E 57 5 6 HELIX 29 29 TYR E 61 THR E 64 5 4 HELIX 30 30 PHE E 65 TYR E 71 1 7 HELIX 31 31 ALA E 80 ARG E 86 1 7 HELIX 32 32 GLU E 102 ALA E 111 1 10 HELIX 33 33 SER F 8 THR F 12 5 5 HELIX 34 34 ASP F 13 LEU F 20 1 8 HELIX 35 35 GLN F 31 VAL F 38 5 8 HELIX 36 36 TYR F 43 ASN F 49 1 7 HELIX 37 37 ASN F 58 ARG F 64 1 7 HELIX 38 38 LEU F 66 ILE F 70 5 5 HELIX 39 39 ASP F 78 HIS F 89 1 12 HELIX 40 40 GLN G 15 ASP G 30 1 16 HELIX 41 41 ARG G 41 ASN G 48 5 8 HELIX 42 42 ASP G 59 GLY G 72 1 14 HELIX 43 43 VAL G 79 ARG G 85 1 7 HELIX 44 44 ASP G 89 GLY G 97 1 9 HELIX 45 45 LEU G 112 CYS G 122 1 11 HELIX 46 46 ALA H 16 ALA H 30 1 15 HELIX 47 47 ALA H 41 LEU H 48 5 8 HELIX 48 48 LYS H 52 LEU H 57 5 6 HELIX 49 49 TYR H 61 THR H 64 5 4 HELIX 50 50 PHE H 65 TYR H 71 1 7 HELIX 51 51 ALA H 80 ARG H 86 1 7 HELIX 52 52 GLU H 102 ALA H 111 1 10 HELIX 53 53 SER I 8 THR I 12 5 5 HELIX 54 54 ASP I 13 LEU I 20 1 8 HELIX 55 55 GLN I 31 VAL I 38 5 8 HELIX 56 56 TYR I 43 ASN I 49 1 7 HELIX 57 57 ASN I 58 ARG I 64 1 7 HELIX 58 58 ASP I 78 HIS I 89 1 12 SHEET 1 A 5 PHE A 107 SER A 110 0 SHEET 2 A 5 ALA A 74 CYS A 78 1 N LEU A 75 O THR A 108 SHEET 3 A 5 GLU A 33 PHE A 39 1 N PHE A 39 O ASN A 76 SHEET 4 A 5 ARG A 2 VAL A 7 1 N PHE A 3 O GLU A 33 SHEET 5 A 5 ARG A 124 GLN A 127 1 O VAL A 126 N VAL A 6 SHEET 1 B 5 THR B 99 LEU B 101 0 SHEET 2 B 5 CYS B 76 CYS B 79 1 N VAL B 78 O LEU B 101 SHEET 3 B 5 LEU B 35 PHE B 39 1 N VAL B 37 O TRP B 77 SHEET 4 B 5 ILE B 4 PHE B 8 1 N PHE B 8 O PHE B 38 SHEET 5 B 5 VAL B 115 PHE B 119 1 O VAL B 115 N ALA B 5 SHEET 1 C 5 ILE C 75 ILE C 77 0 SHEET 2 C 5 LYS C 53 LEU C 57 1 N VAL C 54 O ILE C 75 SHEET 3 C 5 GLU C 26 LEU C 29 1 N LEU C 27 O TYR C 55 SHEET 4 C 5 LEU C 2 LEU C 5 1 N HIS C 3 O GLU C 26 SHEET 5 C 5 GLN C 92 ALA C 94 1 O MET C 93 N THR C 4 SHEET 1 D 5 PHE D 107 SER D 110 0 SHEET 2 D 5 ALA D 74 CYS D 78 1 N LEU D 75 O THR D 108 SHEET 3 D 5 GLU D 33 PHE D 39 1 N PHE D 39 O ASN D 76 SHEET 4 D 5 ARG D 2 VAL D 7 1 N PHE D 3 O GLU D 33 SHEET 5 D 5 ARG D 124 GLN D 127 1 O VAL D 126 N VAL D 6 SHEET 1 E 5 THR E 99 LEU E 101 0 SHEET 2 E 5 CYS E 76 CYS E 79 1 N CYS E 76 O THR E 99 SHEET 3 E 5 LEU E 35 PHE E 39 1 N PHE E 39 O CYS E 79 SHEET 4 E 5 ILE E 4 PHE E 8 1 N PHE E 6 O PHE E 38 SHEET 5 E 5 VAL E 115 PHE E 119 1 O VAL E 115 N ALA E 5 SHEET 1 F 5 ILE F 75 ILE F 77 0 SHEET 2 F 5 LYS F 53 LEU F 57 1 N VAL F 54 O ILE F 75 SHEET 3 F 5 GLU F 26 LEU F 29 1 N LEU F 27 O TYR F 55 SHEET 4 F 5 LEU F 2 LEU F 5 1 N HIS F 3 O LEU F 28 SHEET 5 F 5 GLN F 92 ALA F 94 1 O MET F 93 N THR F 4 SHEET 1 G 5 PHE G 107 SER G 110 0 SHEET 2 G 5 ALA G 74 CYS G 78 1 N LEU G 75 O THR G 108 SHEET 3 G 5 GLU G 33 PHE G 39 1 N PHE G 39 O ASN G 76 SHEET 4 G 5 ARG G 2 VAL G 7 1 N PHE G 3 O GLU G 33 SHEET 5 G 5 ARG G 124 GLN G 127 1 O VAL G 126 N VAL G 6 SHEET 1 H 5 THR H 99 LEU H 101 0 SHEET 2 H 5 CYS H 76 CYS H 79 1 N CYS H 76 O THR H 99 SHEET 3 H 5 LEU H 35 PHE H 39 1 N VAL H 37 O TRP H 77 SHEET 4 H 5 ILE H 4 PHE H 8 1 N PHE H 8 O PHE H 38 SHEET 5 H 5 VAL H 115 PHE H 119 1 O VAL H 115 N ALA H 5 SHEET 1 I 5 ILE I 75 ILE I 77 0 SHEET 2 I 5 LYS I 53 LEU I 57 1 N VAL I 54 O ILE I 75 SHEET 3 I 5 GLU I 26 LEU I 29 1 N LEU I 27 O TYR I 55 SHEET 4 I 5 LEU I 2 LEU I 5 1 N HIS I 3 O GLU I 26 SHEET 5 I 5 GLN I 92 ALA I 94 1 O MET I 93 N THR I 4 SITE 1 AC1 3 ARG H 107 ARG H 108 HOH H 321 CRYST1 141.392 141.392 135.686 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007370 0.00000