PDB Short entry for 2D2W HEADER DNA BINDING PROTEIN 19-SEP-05 2D2W TITLE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA-BINDING DOMAIN OF MYOCYTE TITLE 2 NUCLEAR FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORKHEAD BOX PROTEIN K1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN; COMPND 5 SYNONYM: MYOCYTE NUCLEAR FACTOR, MNF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FOXK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS DNA-BINDING DOMAIN, WINGED-HELIX, FORKHEAD, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.-J.CHUANG,C.-H.CHANG,W.-Y.JENG,Y.-P.CHU REVDAT 3 09-MAR-22 2D2W 1 REMARK REVDAT 2 24-FEB-09 2D2W 1 VERSN REVDAT 1 05-SEP-06 2D2W 0 JRNL AUTH C.-H.CHANG,Y.-P.CHU,W.-Y.JENG,W.-J.CHUANG JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE DNA-BINDING JRNL TITL 2 DOMAIN OF MYOCYTE NUCLEAR FACTOR (FOXK1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D2W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000024920. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM MNF;25MM PHOSPHATE BUFFER; REMARK 210 100MM NACL; 3MM MNF;25MM REMARK 210 PHOSPHATE BUFFER; 100MM NACL; REMARK 210 3MM MNF U-15N;25MM PHOSPHATE REMARK 210 BUFFER; 100MM NACL; 3MM MNF U- REMARK 210 15N,13C;25MM PHOSPHATE BUFFER; REMARK 210 100MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.7.10, XWINNMR 2.6 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HNCA, HN(CO)CA, HNCACB, CBCA(CO)NH, HBHA(CACB)NH, REMARK 210 HBHA(CACBCO)NH, HCCH-TOCSY, HCCH-COSY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -162.50 65.67 REMARK 500 1 SER A 7 167.95 -48.59 REMARK 500 1 ALA A 15 -72.66 -67.71 REMARK 500 1 ALA A 19 -156.64 -62.32 REMARK 500 1 GLN A 20 -98.86 -49.84 REMARK 500 1 ARG A 22 28.20 -174.05 REMARK 500 1 SER A 27 47.03 -99.97 REMARK 500 1 HIS A 32 -83.54 -74.06 REMARK 500 1 LYS A 45 48.80 -87.04 REMARK 500 1 ARG A 66 48.31 -163.48 REMARK 500 1 GLN A 68 -72.25 -143.73 REMARK 500 1 PHE A 76 -129.08 -172.76 REMARK 500 1 ARG A 78 -160.83 -160.27 REMARK 500 1 GLN A 97 -72.63 -118.72 REMARK 500 1 ARG A 98 31.78 -177.82 REMARK 500 2 SER A 2 -77.12 -157.67 REMARK 500 2 SER A 7 -178.74 -50.90 REMARK 500 2 ALA A 9 -38.65 -131.34 REMARK 500 2 ALA A 19 -168.03 -60.94 REMARK 500 2 GLN A 20 -90.88 -45.11 REMARK 500 2 ASP A 21 -64.58 -90.38 REMARK 500 2 ARG A 22 38.01 179.85 REMARK 500 2 ARG A 41 -56.35 -164.13 REMARK 500 2 THR A 42 28.53 -157.81 REMARK 500 2 ALA A 43 -82.13 -68.46 REMARK 500 2 LYS A 45 31.03 -90.21 REMARK 500 2 VAL A 64 87.05 -161.64 REMARK 500 2 GLU A 69 -70.10 -88.87 REMARK 500 2 LYS A 73 -73.75 -86.07 REMARK 500 2 SER A 75 -68.62 -124.39 REMARK 500 2 LYS A 94 -79.73 -130.84 REMARK 500 2 ARG A 96 -55.13 -161.61 REMARK 500 3 SER A 7 172.00 -49.14 REMARK 500 3 ARG A 22 -4.19 -59.59 REMARK 500 3 SER A 27 32.24 -99.62 REMARK 500 3 HIS A 32 -70.51 -77.61 REMARK 500 3 TYR A 40 99.40 -60.28 REMARK 500 3 ARG A 41 -50.69 -141.16 REMARK 500 3 THR A 42 40.07 -165.56 REMARK 500 3 ALA A 43 -89.28 -79.13 REMARK 500 3 LYS A 45 43.94 -90.30 REMARK 500 3 TYR A 60 50.17 -151.33 REMARK 500 3 GLU A 69 -76.12 -169.42 REMARK 500 3 ARG A 96 155.50 179.87 REMARK 500 4 SER A 2 -125.36 72.29 REMARK 500 4 SER A 7 169.32 -48.56 REMARK 500 4 ALA A 19 -162.57 -65.86 REMARK 500 4 GLN A 20 -76.84 -66.54 REMARK 500 4 ASP A 21 -73.56 -91.42 REMARK 500 4 ARG A 22 31.94 178.75 REMARK 500 REMARK 500 THIS ENTRY HAS 287 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 22 0.28 SIDE CHAIN REMARK 500 1 ARG A 41 0.28 SIDE CHAIN REMARK 500 1 ARG A 52 0.22 SIDE CHAIN REMARK 500 1 ARG A 59 0.31 SIDE CHAIN REMARK 500 1 ARG A 66 0.09 SIDE CHAIN REMARK 500 1 ARG A 78 0.18 SIDE CHAIN REMARK 500 1 ARG A 93 0.09 SIDE CHAIN REMARK 500 1 ARG A 95 0.11 SIDE CHAIN REMARK 500 1 ARG A 96 0.31 SIDE CHAIN REMARK 500 1 ARG A 98 0.32 SIDE CHAIN REMARK 500 2 ARG A 22 0.31 SIDE CHAIN REMARK 500 2 ARG A 41 0.15 SIDE CHAIN REMARK 500 2 ARG A 52 0.29 SIDE CHAIN REMARK 500 2 ARG A 59 0.30 SIDE CHAIN REMARK 500 2 ARG A 66 0.19 SIDE CHAIN REMARK 500 2 ARG A 78 0.10 SIDE CHAIN REMARK 500 2 ARG A 93 0.28 SIDE CHAIN REMARK 500 2 ARG A 95 0.25 SIDE CHAIN REMARK 500 2 ARG A 96 0.29 SIDE CHAIN REMARK 500 2 ARG A 98 0.27 SIDE CHAIN REMARK 500 3 ARG A 22 0.28 SIDE CHAIN REMARK 500 3 ARG A 41 0.12 SIDE CHAIN REMARK 500 3 ARG A 52 0.32 SIDE CHAIN REMARK 500 3 ARG A 59 0.27 SIDE CHAIN REMARK 500 3 ARG A 66 0.15 SIDE CHAIN REMARK 500 3 ARG A 78 0.31 SIDE CHAIN REMARK 500 3 ARG A 93 0.20 SIDE CHAIN REMARK 500 3 ARG A 95 0.20 SIDE CHAIN REMARK 500 3 ARG A 98 0.23 SIDE CHAIN REMARK 500 4 ARG A 22 0.23 SIDE CHAIN REMARK 500 4 ARG A 41 0.32 SIDE CHAIN REMARK 500 4 ARG A 52 0.32 SIDE CHAIN REMARK 500 4 ARG A 59 0.28 SIDE CHAIN REMARK 500 4 ARG A 66 0.21 SIDE CHAIN REMARK 500 4 ARG A 78 0.14 SIDE CHAIN REMARK 500 4 ARG A 93 0.25 SIDE CHAIN REMARK 500 4 ARG A 95 0.29 SIDE CHAIN REMARK 500 4 ARG A 96 0.28 SIDE CHAIN REMARK 500 4 ARG A 98 0.29 SIDE CHAIN REMARK 500 5 ARG A 22 0.31 SIDE CHAIN REMARK 500 5 ARG A 41 0.10 SIDE CHAIN REMARK 500 5 ARG A 52 0.24 SIDE CHAIN REMARK 500 5 ARG A 59 0.32 SIDE CHAIN REMARK 500 5 ARG A 66 0.31 SIDE CHAIN REMARK 500 5 ARG A 93 0.30 SIDE CHAIN REMARK 500 5 ARG A 95 0.19 SIDE CHAIN REMARK 500 5 ARG A 96 0.28 SIDE CHAIN REMARK 500 6 ARG A 22 0.32 SIDE CHAIN REMARK 500 6 ARG A 41 0.24 SIDE CHAIN REMARK 500 6 ARG A 52 0.20 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 190 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2D2W A 1 101 UNP P42128 FOXK1_MOUSE 287 387 SEQRES 1 A 101 GLU SER LYS PRO PRO TYR SER TYR ALA GLN LEU ILE VAL SEQRES 2 A 101 GLN ALA ILE SER SER ALA GLN ASP ARG GLN LEU THR LEU SEQRES 3 A 101 SER GLY ILE TYR ALA HIS ILE THR LYS HIS TYR PRO TYR SEQRES 4 A 101 TYR ARG THR ALA ASP LYS GLY TRP GLN ASN SER ILE ARG SEQRES 5 A 101 HIS ASN LEU SER LEU ASN ARG TYR PHE ILE LYS VAL PRO SEQRES 6 A 101 ARG SER GLN GLU GLU PRO GLY LYS GLY SER PHE TRP ARG SEQRES 7 A 101 ILE ASP PRO ALA SER GLU ALA LYS LEU VAL GLU GLN ALA SEQRES 8 A 101 PHE ARG LYS ARG ARG GLN ARG GLY VAL SER HELIX 1 1 ALA A 9 ALA A 19 1 11 HELIX 2 2 GLY A 28 TYR A 37 1 10 HELIX 3 3 GLY A 46 ASN A 58 1 13 HELIX 4 4 LYS A 86 PHE A 92 1 7 SHEET 1 A 3 GLN A 23 LEU A 24 0 SHEET 2 A 3 TRP A 77 ARG A 78 -1 O TRP A 77 N LEU A 24 SHEET 3 A 3 ILE A 62 LYS A 63 -1 N ILE A 62 O ARG A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000