PDB Short entry for 2D4Y HEADER STRUCTURAL PROTEIN 25-OCT-05 2D4Y TITLE CRYSTAL STRUCTURE OF A 49K FRAGMENT OF HAP1 (FLGK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLAR HOOK-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FK49; COMPND 5 SYNONYM: HAP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3C KEYWDS MULTI-DOMAIN PROTEIN, ALPHA-HELICAL BUNDLE, COMPLEX ALL-BETA FOLDS, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.IMADA,H.MATSUNAMI,A.F.SAMATEY,S.NAGASHIMA,K.NAMBA REVDAT 3 13-MAR-24 2D4Y 1 SEQADV REVDAT 2 24-FEB-09 2D4Y 1 VERSN REVDAT 1 14-NOV-06 2D4Y 0 JRNL AUTH K.IMADA,H.MATSUNAMI,M.YAMANE,A.F.SAMATEY,S.NAGASHIMA,K.NAMBA JRNL TITL STRUCTURE OF THE BACTERIAL FLAGELLAR HOOK-FILAMENT JUNCTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 56302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 775 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.255 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.848 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6501 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8807 ; 1.356 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 848 ; 3.467 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1161 ;16.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1055 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4863 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3702 ; 0.269 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 871 ; 0.285 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.222 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.386 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4219 ; 0.902 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6777 ; 1.685 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2282 ; 2.482 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2030 ; 4.128 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000024992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-03; 06-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL41XU; BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0394; 0.9797, 0.9799, 0.9735, REMARK 200 0.9843 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR; REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 75.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-15% PEG 8000, 20-25% ISOPROPANOL, REMARK 280 0.1M CITRATE, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.46400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.82250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.84850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.82250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.46400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.84850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 64 REMARK 465 GLU A 65 REMARK 465 TYR A 66 REMARK 465 GLY A 187 REMARK 465 VAL A 188 REMARK 465 GLY A 189 REMARK 465 ALA A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 PRO A 194 REMARK 465 ASP A 442 REMARK 465 PRO A 443 REMARK 465 ASP A 444 REMARK 465 VAL A 445 REMARK 465 ASP A 446 REMARK 465 THR A 447 REMARK 465 GLY A 448 REMARK 465 ASP A 449 REMARK 465 VAL A 512 REMARK 465 SER A 513 REMARK 465 GLY A 514 REMARK 465 VAL A 515 REMARK 465 ASN A 516 REMARK 465 LEU A 517 REMARK 465 ASP A 518 REMARK 465 GLU A 519 REMARK 465 GLU A 520 REMARK 465 TYR A 521 REMARK 465 GLY A 522 REMARK 465 ASN A 523 REMARK 465 LEU A 524 REMARK 465 GLN A 525 REMARK 465 ARG A 526 REMARK 465 MET B 64 REMARK 465 GLU B 65 REMARK 465 TYR B 66 REMARK 465 ASP B 67 REMARK 465 ALA B 68 REMARK 465 PHE B 69 REMARK 465 THR B 186 REMARK 465 GLY B 187 REMARK 465 VAL B 188 REMARK 465 GLY B 189 REMARK 465 ALA B 190 REMARK 465 GLY B 191 REMARK 465 ALA B 192 REMARK 465 SER B 193 REMARK 465 PRO B 194 REMARK 465 ASP B 444 REMARK 465 VAL B 445 REMARK 465 ASP B 446 REMARK 465 THR B 447 REMARK 465 GLY B 448 REMARK 465 ASP B 449 REMARK 465 GLN B 510 REMARK 465 SER B 511 REMARK 465 VAL B 512 REMARK 465 SER B 513 REMARK 465 GLY B 514 REMARK 465 VAL B 515 REMARK 465 ASN B 516 REMARK 465 LEU B 517 REMARK 465 ASP B 518 REMARK 465 GLU B 519 REMARK 465 GLU B 520 REMARK 465 TYR B 521 REMARK 465 GLY B 522 REMARK 465 ASN B 523 REMARK 465 LEU B 524 REMARK 465 GLN B 525 REMARK 465 ARG B 526 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 655 O HOH A 684 1.07 REMARK 500 O HOH B 578 O HOH B 622 1.38 REMARK 500 O HOH A 757 O HOH A 859 1.48 REMARK 500 O HOH B 696 O HOH B 811 1.57 REMARK 500 OG1 THR B 276 O HOH B 670 1.71 REMARK 500 O HOH B 761 O HOH B 797 1.71 REMARK 500 O TYR A 88 O HOH A 835 1.74 REMARK 500 O HOH B 736 O HOH B 776 1.75 REMARK 500 NZ LYS A 503 O HOH A 799 1.76 REMARK 500 OG1 THR A 253 O HOH A 672 1.77 REMARK 500 O HOH A 798 O HOH A 898 1.77 REMARK 500 OD1 ASN A 225 O HOH A 834 1.79 REMARK 500 O HOH A 720 O HOH A 835 1.79 REMARK 500 O HOH B 652 O HOH B 741 1.83 REMARK 500 OE1 GLN B 80 O HOH B 776 1.83 REMARK 500 O HOH B 556 O HOH B 557 1.85 REMARK 500 ND2 ASN B 72 O HOH B 828 1.85 REMARK 500 OD2 ASP B 317 O HOH B 573 1.92 REMARK 500 OD1 ASN B 429 O HOH B 713 1.92 REMARK 500 O HOH B 601 O HOH B 606 1.92 REMARK 500 O ASN B 275 O HOH B 693 1.92 REMARK 500 OD1 ASP B 475 O HOH B 762 1.94 REMARK 500 O HOH A 666 O HOH A 708 1.99 REMARK 500 OD1 ASN A 170 O HOH A 627 2.00 REMARK 500 NZ LYS B 356 O HOH B 587 2.02 REMARK 500 O ASN B 452 O HOH B 642 2.05 REMARK 500 OE1 GLU A 215 O HOH A 778 2.05 REMARK 500 OG1 THR A 344 O HOH A 848 2.06 REMARK 500 OD2 ASP A 251 O HOH A 654 2.06 REMARK 500 O HOH B 617 O HOH B 764 2.06 REMARK 500 N TYR B 316 O HOH B 873 2.10 REMARK 500 CB SER B 489 O HOH B 897 2.10 REMARK 500 O HOH A 591 O HOH A 690 2.10 REMARK 500 O HOH A 652 O HOH A 795 2.10 REMARK 500 OE1 GLN A 406 O HOH A 732 2.11 REMARK 500 OE1 GLN A 110 OG1 THR A 114 2.11 REMARK 500 O HOH B 712 O HOH B 791 2.11 REMARK 500 O HOH B 689 O HOH B 876 2.11 REMARK 500 NE2 GLN B 509 O HOH B 622 2.12 REMARK 500 ND2 ASN B 424 O HOH B 684 2.12 REMARK 500 N ASN B 72 O HOH B 595 2.12 REMARK 500 OD1 ASN A 195 O HOH A 801 2.12 REMARK 500 NZ LYS A 398 O HOH A 895 2.13 REMARK 500 O TYR B 316 O HOH B 873 2.14 REMARK 500 O HOH A 714 O HOH A 738 2.14 REMARK 500 NE2 GLN A 117 O HOH A 657 2.15 REMARK 500 ND2 ASN A 170 O HOH A 843 2.16 REMARK 500 O HOH B 618 O HOH B 626 2.16 REMARK 500 NZ LYS B 272 O HOH B 848 2.17 REMARK 500 OH TYR B 477 O HOH B 845 2.17 REMARK 500 REMARK 500 THIS ENTRY HAS 54 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 834 O HOH B 756 3545 1.79 REMARK 500 O HOH A 712 O HOH B 788 4555 1.84 REMARK 500 O HOH B 801 O HOH B 887 3555 1.90 REMARK 500 O HOH A 682 O HOH A 725 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 306 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 389 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 409 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 460 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 202 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 220 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 317 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP B 422 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 475 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 103 -15.14 -144.23 REMARK 500 ASN A 275 46.48 -85.56 REMARK 500 THR A 313 1.17 -69.46 REMARK 500 THR A 369 -52.74 -125.71 REMARK 500 ASP A 395 69.71 33.58 REMARK 500 ASP B 317 -167.03 -49.25 REMARK 500 THR B 369 -46.62 -130.51 REMARK 500 ASP B 387 -167.68 -77.94 REMARK 500 ASP B 395 67.72 31.54 REMARK 500 ASN B 408 -6.29 77.26 REMARK 500 ASN B 470 13.34 -152.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IO1 RELATED DB: PDB REMARK 900 RELATED ID: 1UCU RELATED DB: PDB REMARK 900 RELATED ID: 1WLG RELATED DB: PDB REMARK 900 RELATED ID: 2D4X RELATED DB: PDB DBREF 2D4Y A 65 526 UNP P0A1J5 FLGK_SALTY 65 526 DBREF 2D4Y B 65 526 UNP P0A1J5 FLGK_SALTY 65 526 SEQADV 2D4Y MET A 64 UNP P0A1J5 INITIATING METHIONINE SEQADV 2D4Y MET B 64 UNP P0A1J5 INITIATING METHIONINE SEQRES 1 A 463 MET GLU TYR ASP ALA PHE ILE THR ASN GLN LEU ARG GLY SEQRES 2 A 463 ALA GLN ASN GLN SER SER GLY LEU THR THR ARG TYR GLU SEQRES 3 A 463 GLN MET SER LYS ILE ASP ASN LEU LEU ALA ASP LYS SER SEQRES 4 A 463 SER SER LEU SER GLY SER LEU GLN SER PHE PHE THR SER SEQRES 5 A 463 LEU GLN THR LEU VAL SER ASN ALA GLU ASP PRO ALA ALA SEQRES 6 A 463 ARG GLN ALA LEU ILE GLY LYS ALA GLU GLY LEU VAL ASN SEQRES 7 A 463 GLN PHE LYS THR THR ASP GLN TYR LEU ARG ASP GLN ASP SEQRES 8 A 463 LYS GLN VAL ASN ILE ALA ILE GLY SER SER VAL ALA GLN SEQRES 9 A 463 ILE ASN ASN TYR ALA LYS GLN ILE ALA ASN LEU ASN ASP SEQRES 10 A 463 GLN ILE SER ARG MET THR GLY VAL GLY ALA GLY ALA SER SEQRES 11 A 463 PRO ASN ASP LEU LEU ASP GLN ARG ASP GLN LEU VAL SER SEQRES 12 A 463 GLU LEU ASN LYS ILE VAL GLY VAL GLU VAL SER VAL GLN SEQRES 13 A 463 ASP GLY GLY THR TYR ASN LEU THR MET ALA ASN GLY TYR SEQRES 14 A 463 THR LEU VAL GLN GLY SER THR ALA ARG GLN LEU ALA ALA SEQRES 15 A 463 VAL PRO SER SER ALA ASP PRO THR ARG THR THR VAL ALA SEQRES 16 A 463 TYR VAL ASP GLU ALA ALA GLY ASN ILE GLU ILE PRO GLU SEQRES 17 A 463 LYS LEU LEU ASN THR GLY SER LEU GLY GLY LEU LEU THR SEQRES 18 A 463 PHE ARG SER GLN ASP LEU ASP GLN THR ARG ASN THR LEU SEQRES 19 A 463 GLY GLN LEU ALA LEU ALA PHE ALA ASP ALA PHE ASN ALA SEQRES 20 A 463 GLN HIS THR LYS GLY TYR ASP ALA ASP GLY ASN LYS GLY SEQRES 21 A 463 LYS ASP PHE PHE SER ILE GLY SER PRO VAL VAL TYR SER SEQRES 22 A 463 ASN SER ASN ASN ALA ASP LYS THR VAL SER LEU THR ALA SEQRES 23 A 463 LYS VAL VAL ASP SER THR LYS VAL GLN ALA THR ASP TYR SEQRES 24 A 463 LYS ILE VAL PHE ASP GLY THR ASP TRP GLN VAL THR ARG SEQRES 25 A 463 THR ALA ASP ASN THR THR PHE THR ALA THR LYS ASP ALA SEQRES 26 A 463 ASP GLY LYS LEU GLU ILE ASP GLY LEU LYS VAL THR VAL SEQRES 27 A 463 GLY THR GLY ALA GLN LYS ASN ASP SER PHE LEU LEU LYS SEQRES 28 A 463 PRO VAL SER ASN ALA ILE VAL ASP MET ASN VAL LYS VAL SEQRES 29 A 463 THR ASN GLU ALA GLU ILE ALA MET ALA SER GLU SER LYS SEQRES 30 A 463 LEU ASP PRO ASP VAL ASP THR GLY ASP SER ASP ASN ARG SEQRES 31 A 463 ASN GLY GLN ALA LEU LEU ASP LEU GLN ASN SER ASN VAL SEQRES 32 A 463 VAL GLY GLY ASN LYS THR PHE ASN ASP ALA TYR ALA THR SEQRES 33 A 463 LEU VAL SER ASP VAL GLY ASN LYS THR SER THR LEU LYS SEQRES 34 A 463 THR SER SER THR THR GLN ALA ASN VAL VAL LYS GLN LEU SEQRES 35 A 463 TYR LYS GLN GLN GLN SER VAL SER GLY VAL ASN LEU ASP SEQRES 36 A 463 GLU GLU TYR GLY ASN LEU GLN ARG SEQRES 1 B 463 MET GLU TYR ASP ALA PHE ILE THR ASN GLN LEU ARG GLY SEQRES 2 B 463 ALA GLN ASN GLN SER SER GLY LEU THR THR ARG TYR GLU SEQRES 3 B 463 GLN MET SER LYS ILE ASP ASN LEU LEU ALA ASP LYS SER SEQRES 4 B 463 SER SER LEU SER GLY SER LEU GLN SER PHE PHE THR SER SEQRES 5 B 463 LEU GLN THR LEU VAL SER ASN ALA GLU ASP PRO ALA ALA SEQRES 6 B 463 ARG GLN ALA LEU ILE GLY LYS ALA GLU GLY LEU VAL ASN SEQRES 7 B 463 GLN PHE LYS THR THR ASP GLN TYR LEU ARG ASP GLN ASP SEQRES 8 B 463 LYS GLN VAL ASN ILE ALA ILE GLY SER SER VAL ALA GLN SEQRES 9 B 463 ILE ASN ASN TYR ALA LYS GLN ILE ALA ASN LEU ASN ASP SEQRES 10 B 463 GLN ILE SER ARG MET THR GLY VAL GLY ALA GLY ALA SER SEQRES 11 B 463 PRO ASN ASP LEU LEU ASP GLN ARG ASP GLN LEU VAL SER SEQRES 12 B 463 GLU LEU ASN LYS ILE VAL GLY VAL GLU VAL SER VAL GLN SEQRES 13 B 463 ASP GLY GLY THR TYR ASN LEU THR MET ALA ASN GLY TYR SEQRES 14 B 463 THR LEU VAL GLN GLY SER THR ALA ARG GLN LEU ALA ALA SEQRES 15 B 463 VAL PRO SER SER ALA ASP PRO THR ARG THR THR VAL ALA SEQRES 16 B 463 TYR VAL ASP GLU ALA ALA GLY ASN ILE GLU ILE PRO GLU SEQRES 17 B 463 LYS LEU LEU ASN THR GLY SER LEU GLY GLY LEU LEU THR SEQRES 18 B 463 PHE ARG SER GLN ASP LEU ASP GLN THR ARG ASN THR LEU SEQRES 19 B 463 GLY GLN LEU ALA LEU ALA PHE ALA ASP ALA PHE ASN ALA SEQRES 20 B 463 GLN HIS THR LYS GLY TYR ASP ALA ASP GLY ASN LYS GLY SEQRES 21 B 463 LYS ASP PHE PHE SER ILE GLY SER PRO VAL VAL TYR SER SEQRES 22 B 463 ASN SER ASN ASN ALA ASP LYS THR VAL SER LEU THR ALA SEQRES 23 B 463 LYS VAL VAL ASP SER THR LYS VAL GLN ALA THR ASP TYR SEQRES 24 B 463 LYS ILE VAL PHE ASP GLY THR ASP TRP GLN VAL THR ARG SEQRES 25 B 463 THR ALA ASP ASN THR THR PHE THR ALA THR LYS ASP ALA SEQRES 26 B 463 ASP GLY LYS LEU GLU ILE ASP GLY LEU LYS VAL THR VAL SEQRES 27 B 463 GLY THR GLY ALA GLN LYS ASN ASP SER PHE LEU LEU LYS SEQRES 28 B 463 PRO VAL SER ASN ALA ILE VAL ASP MET ASN VAL LYS VAL SEQRES 29 B 463 THR ASN GLU ALA GLU ILE ALA MET ALA SER GLU SER LYS SEQRES 30 B 463 LEU ASP PRO ASP VAL ASP THR GLY ASP SER ASP ASN ARG SEQRES 31 B 463 ASN GLY GLN ALA LEU LEU ASP LEU GLN ASN SER ASN VAL SEQRES 32 B 463 VAL GLY GLY ASN LYS THR PHE ASN ASP ALA TYR ALA THR SEQRES 33 B 463 LEU VAL SER ASP VAL GLY ASN LYS THR SER THR LEU LYS SEQRES 34 B 463 THR SER SER THR THR GLN ALA ASN VAL VAL LYS GLN LEU SEQRES 35 B 463 TYR LYS GLN GLN GLN SER VAL SER GLY VAL ASN LEU ASP SEQRES 36 B 463 GLU GLU TYR GLY ASN LEU GLN ARG FORMUL 3 HOH *775(H2 O) HELIX 1 1 ASP A 67 ASP A 100 1 34 HELIX 2 2 SER A 104 ASN A 122 1 19 HELIX 3 3 ASP A 125 THR A 186 1 62 HELIX 4 4 ASN A 195 VAL A 212 1 18 HELIX 5 5 PRO A 270 ASN A 275 5 6 HELIX 6 6 THR A 276 ASP A 289 1 14 HELIX 7 7 ASP A 289 THR A 313 1 25 HELIX 8 8 ASP A 353 VAL A 357 5 5 HELIX 9 9 ASN A 429 ILE A 433 5 5 HELIX 10 10 ASN A 452 ASP A 460 1 9 HELIX 11 11 LEU A 461 SER A 464 5 4 HELIX 12 12 THR A 472 SER A 511 1 40 HELIX 13 13 THR B 71 ASP B 100 1 30 HELIX 14 14 SER B 104 ASN B 122 1 19 HELIX 15 15 ASP B 125 MET B 185 1 61 HELIX 16 16 ASN B 195 VAL B 212 1 18 HELIX 17 17 PRO B 270 LEU B 274 5 5 HELIX 18 18 THR B 276 ASP B 289 1 14 HELIX 19 19 ASP B 289 THR B 313 1 25 HELIX 20 20 ASP B 353 VAL B 357 5 5 HELIX 21 21 ASN B 429 ILE B 433 5 5 HELIX 22 22 ASN B 452 LEU B 461 1 10 HELIX 23 23 GLN B 462 SER B 464 5 3 HELIX 24 24 THR B 472 LYS B 507 1 36 SHEET 1 A 4 VAL A 214 GLN A 219 0 SHEET 2 A 4 THR A 223 MET A 228 -1 O THR A 227 N GLU A 215 SHEET 3 A 4 THR A 233 GLN A 236 -1 O VAL A 235 N LEU A 226 SHEET 4 A 4 THR A 239 ALA A 240 -1 O THR A 239 N GLN A 236 SHEET 1 B 3 LEU A 243 PRO A 247 0 SHEET 2 B 3 THR A 255 ASP A 261 -1 O THR A 256 N VAL A 246 SHEET 3 B 3 GLY A 265 GLU A 268 -1 O GLY A 265 N ASP A 261 SHEET 1 C 2 PHE A 327 SER A 328 0 SHEET 2 C 2 ASN A 424 VAL A 425 -1 O ASN A 424 N SER A 328 SHEET 1 D 5 VAL A 333 SER A 336 0 SHEET 2 D 5 ASP A 409 LYS A 414 -1 O LEU A 412 N TYR A 335 SHEET 3 D 5 TYR A 362 PHE A 366 -1 N TYR A 362 O LEU A 413 SHEET 4 D 5 TRP A 371 ARG A 375 -1 O GLN A 372 N VAL A 365 SHEET 5 D 5 THR A 381 THR A 383 -1 O PHE A 382 N VAL A 373 SHEET 1 E 4 THR A 348 VAL A 351 0 SHEET 2 E 4 LEU A 397 THR A 400 -1 O THR A 400 N THR A 348 SHEET 3 E 4 LEU A 392 ILE A 394 -1 N LEU A 392 O VAL A 399 SHEET 4 E 4 THR A 385 LYS A 386 -1 N THR A 385 O GLU A 393 SHEET 1 F 4 VAL B 214 VAL B 218 0 SHEET 2 F 4 TYR B 224 MET B 228 -1 O ASN B 225 N SER B 217 SHEET 3 F 4 THR B 233 GLN B 236 -1 O VAL B 235 N LEU B 226 SHEET 4 F 4 THR B 239 ALA B 240 -1 O THR B 239 N GLN B 236 SHEET 1 G 3 LEU B 243 PRO B 247 0 SHEET 2 G 3 THR B 255 ASP B 261 -1 O ALA B 258 N ALA B 244 SHEET 3 G 3 GLY B 265 GLU B 268 -1 O ILE B 267 N TYR B 259 SHEET 1 H 2 PHE B 327 SER B 328 0 SHEET 2 H 2 ASN B 424 VAL B 425 -1 O ASN B 424 N SER B 328 SHEET 1 I 5 VAL B 333 SER B 336 0 SHEET 2 I 5 SER B 410 LYS B 414 -1 O LYS B 414 N VAL B 333 SHEET 3 I 5 TYR B 362 PHE B 366 -1 N ILE B 364 O PHE B 411 SHEET 4 I 5 TRP B 371 ARG B 375 -1 O GLN B 372 N VAL B 365 SHEET 5 I 5 THR B 381 THR B 383 -1 O PHE B 382 N VAL B 373 SHEET 1 J 4 THR B 348 VAL B 351 0 SHEET 2 J 4 LEU B 397 THR B 400 -1 O LYS B 398 N LYS B 350 SHEET 3 J 4 LEU B 392 ILE B 394 -1 N LEU B 392 O VAL B 399 SHEET 4 J 4 THR B 385 LYS B 386 -1 N THR B 385 O GLU B 393 CRYST1 88.928 99.697 109.645 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009120 0.00000