PDB Short entry for 2D7M HEADER STRUCTURAL PROTEIN 24-NOV-05 2D7M TITLE SOLUTION STRUCTURE OF THE 14TH FILAMIN DOMAIN FROM HUMAN FILAMIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: FILAMIN-C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FILAMIN DOMAIN; COMPND 5 SYNONYM: GAMMA-FILAMIN, FILAMIN-2, PROTEIN FLNC, ACTIN-BINDING-LIKE COMPND 6 PROTEIN, ABP-L, ABP-280-LIKE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLNC; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, IMMUNOGLOBULIN-LIKE FOLD, FILAMIN DOMAIN, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D7M 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D7M 1 VERSN REVDAT 1 24-MAY-06 2D7M 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 14TH FILAMIN DOMAIN FROM HUMAN JRNL TITL 2 FILAMIN C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D7M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025087. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM FILAMIN DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 43 54.69 -94.36 REMARK 500 1 ASP A 52 162.90 -40.84 REMARK 500 1 PRO A 53 6.81 -69.82 REMARK 500 1 PRO A 76 81.08 -69.80 REMARK 500 1 PRO A 94 3.15 -69.77 REMARK 500 1 THR A 105 34.31 -97.13 REMARK 500 2 ASP A 52 162.88 -40.64 REMARK 500 2 PRO A 53 6.73 -69.78 REMARK 500 2 PRO A 76 83.85 -69.73 REMARK 500 2 PRO A 94 3.13 -69.74 REMARK 500 2 THR A 105 -26.41 -39.35 REMARK 500 2 ASP A 107 176.62 -50.50 REMARK 500 3 SER A 3 168.46 -48.17 REMARK 500 3 ALA A 8 41.69 -100.98 REMARK 500 3 GLU A 43 54.52 -96.75 REMARK 500 3 ASP A 52 162.86 -40.83 REMARK 500 3 PRO A 53 6.87 -69.76 REMARK 500 3 PRO A 76 81.54 -69.79 REMARK 500 3 PRO A 94 3.21 -69.70 REMARK 500 3 PRO A 104 97.89 -69.74 REMARK 500 3 ALA A 108 98.57 -55.76 REMARK 500 3 SER A 109 -53.16 -134.72 REMARK 500 3 SER A 114 -59.07 -132.82 REMARK 500 4 SER A 6 109.42 -40.91 REMARK 500 4 GLU A 43 54.80 -95.60 REMARK 500 4 ASP A 52 163.11 -40.86 REMARK 500 4 PRO A 53 7.02 -69.80 REMARK 500 4 PRO A 76 80.82 -69.80 REMARK 500 4 PRO A 94 1.56 -69.81 REMARK 500 4 ASP A 107 -52.32 -130.03 REMARK 500 5 ASP A 40 31.47 -98.51 REMARK 500 5 ASP A 52 162.88 -43.18 REMARK 500 5 PRO A 53 7.11 -69.78 REMARK 500 5 PRO A 76 84.31 -69.75 REMARK 500 5 PRO A 94 3.27 -69.81 REMARK 500 5 PRO A 104 97.13 -69.71 REMARK 500 6 ALA A 28 170.18 -56.90 REMARK 500 6 ASP A 40 33.76 -97.59 REMARK 500 6 GLU A 43 54.61 -97.68 REMARK 500 6 ASP A 52 162.83 -42.95 REMARK 500 6 PRO A 53 6.77 -69.79 REMARK 500 6 PRO A 76 87.17 -69.74 REMARK 500 6 PRO A 94 2.01 -69.82 REMARK 500 6 ALA A 108 42.72 -90.32 REMARK 500 6 SER A 113 110.51 -173.11 REMARK 500 7 GLU A 43 55.31 -100.80 REMARK 500 7 ASP A 52 163.34 -41.33 REMARK 500 7 PRO A 53 6.82 -69.74 REMARK 500 7 PRO A 76 88.38 -69.81 REMARK 500 7 PRO A 94 3.20 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000177.2 RELATED DB: TARGETDB DBREF 2D7M A 8 109 UNP Q14315 FLNC_HUMAN 1536 1637 SEQADV 2D7M GLY A 1 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 2 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 3 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M GLY A 4 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 5 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 6 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M GLY A 7 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M ASP A 52 UNP Q14315 GLY 1580 SEE REMARK 999 SEQADV 2D7M THR A 71 UNP Q14315 ALA 1599 SEE REMARK 999 SEQADV 2D7M SER A 110 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M GLY A 111 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M PRO A 112 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 113 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M SER A 114 UNP Q14315 CLONING ARTIFACT SEQADV 2D7M GLY A 115 UNP Q14315 CLONING ARTIFACT SEQRES 1 A 115 GLY SER SER GLY SER SER GLY ALA HIS ASP ALA SER LYS SEQRES 2 A 115 VAL ARG ALA SER GLY PRO GLY LEU ASN ALA SER GLY ILE SEQRES 3 A 115 PRO ALA SER LEU PRO VAL GLU PHE THR ILE ASP ALA ARG SEQRES 4 A 115 ASP ALA GLY GLU GLY LEU LEU THR VAL GLN ILE LEU ASP SEQRES 5 A 115 PRO GLU GLY LYS PRO LYS LYS ALA ASN ILE ARG ASP ASN SEQRES 6 A 115 GLY ASP GLY THR TYR THR VAL SER TYR LEU PRO ASP MET SEQRES 7 A 115 SER GLY ARG TYR THR ILE THR ILE LYS TYR GLY GLY ASP SEQRES 8 A 115 GLU ILE PRO TYR SER PRO PHE ARG ILE HIS ALA LEU PRO SEQRES 9 A 115 THR GLY ASP ALA SER SER GLY PRO SER SER GLY HELIX 1 1 ASP A 10 SER A 12 5 3 SHEET 1 A 4 VAL A 14 SER A 17 0 SHEET 2 A 4 VAL A 32 ALA A 38 -1 O THR A 35 N SER A 17 SHEET 3 A 4 TYR A 70 TYR A 74 -1 O TYR A 74 N VAL A 32 SHEET 4 A 4 ALA A 60 ASP A 64 -1 N ARG A 63 O THR A 71 SHEET 1 B 4 ILE A 26 PRO A 27 0 SHEET 2 B 4 PHE A 98 LEU A 103 1 O HIS A 101 N ILE A 26 SHEET 3 B 4 GLY A 80 TYR A 88 -1 N TYR A 82 O ILE A 100 SHEET 4 B 4 LEU A 46 LEU A 51 -1 N GLN A 49 O THR A 85 CISPEP 1 SER A 96 PRO A 97 1 0.01 CISPEP 2 SER A 96 PRO A 97 2 -0.02 CISPEP 3 SER A 96 PRO A 97 3 0.00 CISPEP 4 SER A 96 PRO A 97 4 -0.05 CISPEP 5 SER A 96 PRO A 97 5 -0.07 CISPEP 6 SER A 96 PRO A 97 6 0.02 CISPEP 7 SER A 96 PRO A 97 7 -0.04 CISPEP 8 SER A 96 PRO A 97 8 0.00 CISPEP 9 SER A 96 PRO A 97 9 -0.05 CISPEP 10 SER A 96 PRO A 97 10 -0.04 CISPEP 11 SER A 96 PRO A 97 11 0.05 CISPEP 12 SER A 96 PRO A 97 12 -0.06 CISPEP 13 SER A 96 PRO A 97 13 -0.01 CISPEP 14 SER A 96 PRO A 97 14 0.01 CISPEP 15 SER A 96 PRO A 97 15 -0.04 CISPEP 16 SER A 96 PRO A 97 16 -0.07 CISPEP 17 SER A 96 PRO A 97 17 0.01 CISPEP 18 SER A 96 PRO A 97 18 -0.01 CISPEP 19 SER A 96 PRO A 97 19 0.02 CISPEP 20 SER A 96 PRO A 97 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000