PDB Short entry for 2D87 HEADER STRUCTURAL PROTEIN, PROTEIN BINDING 02-DEC-05 2D87 TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN SMOOTHELIN SPLICE TITLE 2 ISOFORM L2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMOOTHELIN SPLICE ISOFORM L2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMTN; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050425-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ALL ALPHA, CALPONIN HOMOLOGY DOMAIN, ACTIN BINDING, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, STRUCTURAL PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D87 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D87 1 VERSN REVDAT 1 02-JUN-06 2D87 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN SMOOTHELIN JRNL TITL 2 SPLICE ISOFORM L2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D87 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025108. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.68MM CH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL(PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 23 129.11 -36.76 REMARK 500 1 ASP A 27 109.16 -169.15 REMARK 500 1 PHE A 31 40.70 -84.95 REMARK 500 1 SER A 32 -65.12 -103.48 REMARK 500 1 ALA A 40 -70.56 -37.08 REMARK 500 1 SER A 73 -35.75 -36.98 REMARK 500 1 THR A 76 -73.28 -43.42 REMARK 500 1 ASP A 79 46.92 38.30 REMARK 500 1 ASP A 96 108.27 -45.66 REMARK 500 2 SER A 2 162.75 -45.57 REMARK 500 2 SER A 3 110.29 -169.65 REMARK 500 2 SER A 6 94.65 -69.39 REMARK 500 2 HIS A 25 28.88 44.53 REMARK 500 2 ASP A 27 106.17 -163.96 REMARK 500 2 SER A 32 -70.21 -111.53 REMARK 500 2 TYR A 55 -60.89 -92.23 REMARK 500 2 GLU A 75 -33.21 -36.91 REMARK 500 2 THR A 76 -72.89 -38.00 REMARK 500 2 PRO A 81 84.05 -69.74 REMARK 500 2 GLN A 82 113.72 -39.87 REMARK 500 2 GLU A 94 144.09 -174.31 REMARK 500 2 SER A 126 125.00 -34.58 REMARK 500 3 THR A 20 31.81 -86.65 REMARK 500 3 TYR A 23 131.79 -36.07 REMARK 500 3 HIS A 25 30.30 36.15 REMARK 500 3 PHE A 31 44.13 -92.94 REMARK 500 3 SER A 32 -68.61 -106.06 REMARK 500 3 PRO A 81 92.16 -69.78 REMARK 500 3 GLN A 82 103.79 -50.64 REMARK 500 3 LYS A 121 56.41 -99.85 REMARK 500 3 PRO A 125 84.24 -69.79 REMARK 500 3 SER A 126 -55.06 -121.06 REMARK 500 4 ASP A 27 105.48 -169.31 REMARK 500 4 PHE A 31 42.70 -102.04 REMARK 500 4 SER A 32 -69.96 -123.74 REMARK 500 4 PHE A 53 137.42 -171.04 REMARK 500 4 ARG A 64 -71.50 -82.67 REMARK 500 4 GLU A 75 -27.56 -39.27 REMARK 500 4 PRO A 81 94.60 -69.75 REMARK 500 4 GLN A 82 106.03 -47.84 REMARK 500 4 LEU A 83 -64.07 -91.47 REMARK 500 4 LYS A 118 154.66 -46.05 REMARK 500 4 SER A 122 50.14 34.40 REMARK 500 5 GLN A 10 -73.72 -86.62 REMARK 500 5 MET A 11 -34.82 -36.95 REMARK 500 5 ASP A 27 105.52 -160.11 REMARK 500 5 PHE A 31 49.16 -86.79 REMARK 500 5 SER A 34 -33.27 -34.32 REMARK 500 5 SER A 36 -33.28 -34.82 REMARK 500 5 GLU A 94 142.11 -170.77 REMARK 500 REMARK 500 THIS ENTRY HAS 194 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003543.1 RELATED DB: TARGETDB DBREF 2D87 A 8 122 UNP P53814 SMOO_HUMAN 801 915 SEQADV 2D87 GLY A 1 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 2 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 3 UNP P53814 CLONING ARTIFACT SEQADV 2D87 GLY A 4 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 5 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 6 UNP P53814 CLONING ARTIFACT SEQADV 2D87 GLY A 7 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 123 UNP P53814 CLONING ARTIFACT SEQADV 2D87 GLY A 124 UNP P53814 CLONING ARTIFACT SEQADV 2D87 PRO A 125 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 126 UNP P53814 CLONING ARTIFACT SEQADV 2D87 SER A 127 UNP P53814 CLONING ARTIFACT SEQADV 2D87 GLY A 128 UNP P53814 CLONING ARTIFACT SEQRES 1 A 128 GLY SER SER GLY SER SER GLY ILE LYS GLN MET LEU LEU SEQRES 2 A 128 ASP TRP CYS ARG ALA LYS THR ARG GLY TYR GLU HIS VAL SEQRES 3 A 128 ASP ILE GLN ASN PHE SER SER SER TRP SER ASP GLY MET SEQRES 4 A 128 ALA PHE CYS ALA LEU VAL HIS ASN PHE PHE PRO GLU ALA SEQRES 5 A 128 PHE ASP TYR GLY GLN LEU SER PRO GLN ASN ARG ARG GLN SEQRES 6 A 128 ASN PHE GLU VAL ALA PHE SER SER ALA GLU THR HIS ALA SEQRES 7 A 128 ASP CYS PRO GLN LEU LEU ASP THR GLU ASP MET VAL ARG SEQRES 8 A 128 LEU ARG GLU PRO ASP TRP LYS CYS VAL TYR THR TYR ILE SEQRES 9 A 128 GLN GLU PHE TYR ARG CYS LEU VAL GLN LYS GLY LEU VAL SEQRES 10 A 128 LYS THR LYS LYS SER SER GLY PRO SER SER GLY HELIX 1 1 GLY A 7 THR A 20 1 14 HELIX 2 2 GLY A 38 PHE A 49 1 12 HELIX 3 3 ASN A 62 ASP A 79 1 18 HELIX 4 4 ASP A 85 LEU A 92 1 8 HELIX 5 5 ASP A 96 GLY A 115 1 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000