PDB Short entry for 2D88
HEADER    SIGNALING PROTEIN, PROTEIN BINDING      02-DEC-05   2D88              
TITLE     SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN MICAL-3 PROTEIN        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEIN MICAL-3;                                           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CH DOMAIN;                                                 
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: MICAL3;                                                        
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050627-23;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    ALL ALPHA, CALPONIN HOMOLOGY DOMAIN, STRUCTURAL GENOMICS, NPPSFA,     
KEYWDS   2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,      
KEYWDS   3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING     
KEYWDS   4 PROTEIN, PROTEIN BINDING                                             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL     
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   3   09-MAR-22 2D88    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2D88    1       VERSN                                    
REVDAT   1   02-JUN-06 2D88    0                                                
JRNL        AUTH   T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA             
JRNL        TITL   SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN MICAL-3       
JRNL        TITL 2 PROTEIN                                                      
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D88 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025109.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.12MM CH DOMAIN U-15N, 13C;       
REMARK 210                                   20MM D-TRIS-HCL(PH 7.0); 100MM     
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3; 10%   
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20030801, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.932, CYANA 2.0.17         
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINTED MOLECULAR DYNAMICS     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES WITH   
REMARK 210                                   THE LOWEST ENERGY, STRUCTURES      
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   3      128.86    -35.73                                   
REMARK 500  1 TYR A  25     -179.64    -61.09                                   
REMARK 500  1 ASN A  29       53.09     34.90                                   
REMARK 500  1 VAL A  30      113.68    -38.16                                   
REMARK 500  1 THR A  34      -74.87   -134.45                                   
REMARK 500  1 LYS A  38      -39.74    -39.97                                   
REMARK 500  1 ALA A  76      -71.13    -45.03                                   
REMARK 500  1 GLU A  79      -62.44    -99.39                                   
REMARK 500  1 GLU A  96      136.66   -170.55                                   
REMARK 500  1 PRO A  97     -174.72    -69.71                                   
REMARK 500  1 LEU A 100      -72.04    -50.77                                   
REMARK 500  1 SER A 119       96.83    -52.84                                   
REMARK 500  1 SER A 120      105.67    -49.67                                   
REMARK 500  2 TYR A  25     -176.28    -62.77                                   
REMARK 500  2 THR A  34      -55.86   -134.73                                   
REMARK 500  2 LYS A  38      -39.85    -35.81                                   
REMARK 500  2 ASN A  68      -31.28    -35.65                                   
REMARK 500  2 LEU A  71      -71.03    -51.21                                   
REMARK 500  2 ASP A  74      -60.85    -92.18                                   
REMARK 500  2 GLU A  79      -68.94   -104.20                                   
REMARK 500  3 ARG A  10      159.54    -48.59                                   
REMARK 500  3 VAL A  28       70.71   -118.96                                   
REMARK 500  3 THR A  34      -74.91   -120.59                                   
REMARK 500  3 SER A  36      -29.62    -39.86                                   
REMARK 500  3 VAL A  65      -66.52    -99.38                                   
REMARK 500  3 LYS A  67      -71.04    -68.46                                   
REMARK 500  3 ASN A  68      -32.19    -39.56                                   
REMARK 500  3 ALA A  76      -70.76    -45.94                                   
REMARK 500  3 GLU A  79      -64.79   -109.72                                   
REMARK 500  3 ILE A  82       97.33    -62.72                                   
REMARK 500  3 GLU A  96      126.46   -170.39                                   
REMARK 500  3 LEU A 100      -72.66    -51.65                                   
REMARK 500  4 SER A   2       42.32     39.94                                   
REMARK 500  4 ALA A   9       42.33   -106.31                                   
REMARK 500  4 SER A  11      115.33    -39.47                                   
REMARK 500  4 THR A  34      -69.74   -134.44                                   
REMARK 500  4 VAL A  65      -66.74   -102.25                                   
REMARK 500  4 ASN A  68      -36.51    -35.78                                   
REMARK 500  4 ALA A  76      -73.35    -45.78                                   
REMARK 500  4 GLU A  79      -65.12   -104.22                                   
REMARK 500  4 GLU A  96      130.01   -172.16                                   
REMARK 500  4 SER A 116      104.12    -35.24                                   
REMARK 500  5 VAL A   8      157.49    -46.38                                   
REMARK 500  5 ARG A  10      144.11    -34.56                                   
REMARK 500  5 VAL A  28      -74.06    -91.26                                   
REMARK 500  5 ASN A  29       54.90     37.34                                   
REMARK 500  5 VAL A  30      125.01    -35.51                                   
REMARK 500  5 THR A  34      -74.35   -133.77                                   
REMARK 500  5 LEU A  60      162.08    -49.45                                   
REMARK 500  5 ASN A  68      -37.09    -35.58                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     209 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK002101337.1   RELATED DB: TARGETDB                    
DBREF  2D88 A    8   115  UNP    Q7RTP6   MICA3_HUMAN    518    625             
SEQADV 2D88 GLY A    1  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A    2  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A    3  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 GLY A    4  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A    5  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A    6  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 GLY A    7  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A  116  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 GLY A  117  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 PRO A  118  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A  119  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 SER A  120  UNP  Q7RTP6              CLONING ARTIFACT               
SEQADV 2D88 GLY A  121  UNP  Q7RTP6              CLONING ARTIFACT               
SEQRES   1 A  121  GLY SER SER GLY SER SER GLY VAL ALA ARG SER SER LYS          
SEQRES   2 A  121  LEU LEU GLY TRP CYS GLN ARG GLN THR ASP GLY TYR ALA          
SEQRES   3 A  121  GLY VAL ASN VAL THR ASP LEU THR MET SER TRP LYS SER          
SEQRES   4 A  121  GLY LEU ALA LEU CYS ALA ILE ILE HIS ARG TYR ARG PRO          
SEQRES   5 A  121  ASP LEU ILE ASP PHE ASP SER LEU ASP GLU GLN ASN VAL          
SEQRES   6 A  121  GLU LYS ASN ASN GLN LEU ALA PHE ASP ILE ALA GLU LYS          
SEQRES   7 A  121  GLU LEU GLY ILE SER PRO ILE MET THR GLY LYS GLU MET          
SEQRES   8 A  121  ALA SER VAL GLY GLU PRO ASP LYS LEU SER MET VAL MET          
SEQRES   9 A  121  TYR LEU THR GLN PHE TYR GLU MET PHE LYS ASP SER GLY          
SEQRES  10 A  121  PRO SER SER GLY                                              
HELIX    1   1 SER A   12  THR A   22  1                                  11    
HELIX    2   2 THR A   34  SER A   39  1                                   6    
HELIX    3   3 GLY A   40  ARG A   51  1                                  12    
HELIX    4   4 ASN A   64  LEU A   80  1                                  17    
HELIX    5   5 THR A   87  VAL A   94  1                                   8    
HELIX    6   6 ASP A   98  LYS A  114  1                                  17    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000