PDB Short entry for 2D8I
HEADER    IMMUNE SYSTEM, SIGNALING PROTEIN        06-DEC-05   2D8I              
TITLE     SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL LYMPHOMA               
TITLE    2 INVASION AND METASTASIS 1 VARIAN                                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: T-CELL LYMPHOMA INVASION AND METASTASIS 1                  
COMPND   3 VARIANT;                                                             
COMPND   4 CHAIN: A;                                                            
COMPND   5 FRAGMENT: PDZ DOMAIN;                                                
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: T1AM-1;                                                        
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050425-07;                               
SOURCE   8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    PDZ DOMAIN, T-CELL LYMPHOMA INVASION AND METASTASIS 1                 
KEYWDS   2 VARIANT, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON            
KEYWDS   3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN                    
KEYWDS   4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, IMMUNE              
KEYWDS   5 SYSTEM, SIGNALING PROTEIN                                            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL                         
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   2   24-FEB-09 2D8I    1       VERSN                                    
REVDAT   1   06-JUN-06 2D8I    0                                                
JRNL        AUTH   X.R.QIN,F.HAYASHI,S.YOKOYAMA                                 
JRNL        TITL   SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL               
JRNL        TITL 2 LYMPHOMA INVASION AND METASTASIS 1 VARIAN                    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT, P.                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D8I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB025119.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.29MM 13C,15N-LABELED             
REMARK 210                                   PROTEIN; 20MM D-TRIS-              
REMARK 210                                   HCL(PH7.0); 100MM NACL; 1MM D-     
REMARK 210                                   DTT; 0.02% NAN3;                   
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1C, NMRPIPE 20031121,       
REMARK 210                                   NMRVIEW 5.0.4, KUJIRA 0.9296,      
REMARK 210                                   CYANA 2.0.17                       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES         
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   3       43.03     36.54                                   
REMARK 500  1 SER A   6       55.23    -91.28                                   
REMARK 500  1 PRO A  13     -178.58    -69.75                                   
REMARK 500  1 ALA A  28      -59.74   -130.30                                   
REMARK 500  1 ASP A  29       96.72    -68.21                                   
REMARK 500  1 TYR A  31      162.34    -42.66                                   
REMARK 500  1 LYS A  60      -71.85    -60.67                                   
REMARK 500  1 ALA A  64       98.25    -60.61                                   
REMARK 500  1 ASN A  73       37.52     71.27                                   
REMARK 500  1 SER A 112       95.13    -49.16                                   
REMARK 500  2 SER A   6       42.50    -96.72                                   
REMARK 500  2 PRO A  13     -178.51    -69.76                                   
REMARK 500  2 LYS A  14      171.15    -54.82                                   
REMARK 500  2 ALA A  28      -70.97   -127.85                                   
REMARK 500  2 TYR A  31     -176.83    -53.92                                   
REMARK 500  2 THR A  54       63.90   -104.43                                   
REMARK 500  2 ALA A  57      -72.53    -34.00                                   
REMARK 500  2 ASP A  66      173.90    -46.74                                   
REMARK 500  2 ASN A  73       34.36     72.94                                   
REMARK 500  2 GLU A 108       29.90     39.64                                   
REMARK 500  3 PRO A  13     -174.74    -69.74                                   
REMARK 500  3 ASP A  25       55.04     74.89                                   
REMARK 500  3 THR A  26      -30.71    -35.76                                   
REMARK 500  3 ALA A  27      -39.88    -33.87                                   
REMARK 500  3 ALA A  28      -64.82   -121.21                                   
REMARK 500  3 TYR A  31      151.07    -43.72                                   
REMARK 500  3 ALA A  57      -36.41    -33.52                                   
REMARK 500  3 ALA A  64       90.61    -62.76                                   
REMARK 500  3 ASN A  73       40.49     71.65                                   
REMARK 500  3 LEU A 103       46.28    -85.87                                   
REMARK 500  4 PRO A  13     -170.16    -69.75                                   
REMARK 500  4 THR A  26      -73.45   -123.30                                   
REMARK 500  4 TYR A  31      169.19    -44.53                                   
REMARK 500  4 ALA A  57      -74.57    -36.48                                   
REMARK 500  4 LEU A  62      160.57    -45.40                                   
REMARK 500  4 LYS A  63      148.16   -171.76                                   
REMARK 500  4 ALA A  64      104.54    -54.62                                   
REMARK 500  5 SER A   3       43.38    -86.25                                   
REMARK 500  5 SER A   5       97.50    -47.81                                   
REMARK 500  5 ALA A  28      -61.37   -106.95                                   
REMARK 500  5 TYR A  31      150.28    -37.54                                   
REMARK 500  5 SER A  89       36.26    -91.15                                   
REMARK 500  5 GLU A 104       40.35   -102.80                                   
REMARK 500  5 VAL A 107      107.71    -53.56                                   
REMARK 500  5 SER A 112      100.06    -58.72                                   
REMARK 500  6 CYS A  12      136.68    -37.43                                   
REMARK 500  6 PRO A  13     -164.34    -69.79                                   
REMARK 500  6 LYS A  14      152.56    -38.12                                   
REMARK 500  6 TYR A  31      -71.74    -34.43                                   
REMARK 500  6 ASN A  73       31.02     72.67                                   
REMARK 500  6 GLU A 104       39.81     35.03                                   
REMARK 500  6 GLU A 105      173.74    -59.14                                   
REMARK 500  6 PRO A 111       99.26    -69.82                                   
REMARK 500  7 ILE A   9       40.20     35.87                                   
REMARK 500  7 PRO A  13     -170.00    -69.77                                   
REMARK 500  7 LYS A  14     -178.55    -50.88                                   
REMARK 500  7 ALA A  27      -71.10    -86.30                                   
REMARK 500  7 TYR A  31      167.91    -44.73                                   
REMARK 500  8 PRO A  13     -179.63    -69.77                                   
REMARK 500  8 LYS A  14      170.18    -53.76                                   
REMARK 500  8 ALA A  28      -64.94   -107.81                                   
REMARK 500  8 TYR A  31      162.03    -42.70                                   
REMARK 500  8 THR A  54       65.23   -113.95                                   
REMARK 500  8 LYS A  63      147.33   -174.99                                   
REMARK 500  8 ALA A  64       92.25    -55.05                                   
REMARK 500  8 ASN A  73       35.10     70.28                                   
REMARK 500  8 SER A  82      -70.36    -43.09                                   
REMARK 500  8 SER A  89       30.79    -87.46                                   
REMARK 500  8 LEU A 103       44.67    -80.64                                   
REMARK 500  8 GLU A 104      110.03   -170.73                                   
REMARK 500  8 VAL A 107      172.35    -51.86                                   
REMARK 500  9 PRO A  13     -167.50    -69.76                                   
REMARK 500  9 LYS A  14      178.00    -51.98                                   
REMARK 500  9 THR A  54       38.80     30.24                                   
REMARK 500  9 ALA A  57      -71.82    -48.50                                   
REMARK 500  9 LEU A  62      154.74    -41.79                                   
REMARK 500  9 ALA A  64       94.47    -51.72                                   
REMARK 500  9 ASN A  73       39.54     72.28                                   
REMARK 500  9 SER A  82      -70.28    -41.25                                   
REMARK 500  9 GLU A 104       52.63     70.59                                   
REMARK 500  9 SER A 113       41.27     38.60                                   
REMARK 500 10 PRO A  13       88.48    -69.78                                   
REMARK 500 10 TYR A  31      165.50    -45.19                                   
REMARK 500 10 LEU A  56      -70.98   -102.17                                   
REMARK 500 10 ASN A  73       43.69     72.79                                   
REMARK 500 10 SER A  81      -33.84    -39.42                                   
REMARK 500 10 GLU A 104      120.15   -170.24                                   
REMARK 500 11 SER A   2      112.78   -168.50                                   
REMARK 500 11 GLU A  10      176.34    -50.02                                   
REMARK 500 11 PRO A  13       88.97    -69.79                                   
REMARK 500 11 LYS A  14      160.88    -46.39                                   
REMARK 500 11 ALA A  27      -33.72    -39.62                                   
REMARK 500 11 ALA A  28      -72.12   -119.69                                   
REMARK 500 11 VAL A  48       99.93    -62.33                                   
REMARK 500 11 GLU A  53      -74.64    -54.30                                   
REMARK 500 11 ALA A  64       93.22    -61.86                                   
REMARK 500 11 ASN A  73       30.33     71.02                                   
REMARK 500 11 PRO A 101     -179.96    -69.71                                   
REMARK 500 11 LEU A 103       40.54    -92.52                                   
REMARK 500 11 GLU A 104       54.21   -109.25                                   
REMARK 500 12 PRO A  13     -169.76    -69.82                                   
REMARK 500 12 TYR A  31     -174.93    -52.15                                   
REMARK 500 12 GLU A  53      -74.50    -34.30                                   
REMARK 500 12 LEU A  62      150.44    -47.04                                   
REMARK 500 12 LYS A  63      147.07   -174.83                                   
REMARK 500 12 ALA A  64      106.95    -44.21                                   
REMARK 500 12 GLU A 104       43.82     39.33                                   
REMARK 500 12 SER A 112      120.33    -36.33                                   
REMARK 500 13 SER A   2      -28.47    -38.55                                   
REMARK 500 13 PRO A  13     -169.82    -69.78                                   
REMARK 500 13 ASP A  29      103.75    -58.30                                   
REMARK 500 13 TYR A  31      -74.50    -39.14                                   
REMARK 500 13 THR A  54       41.74     38.48                                   
REMARK 500 13 LEU A  62      152.99    -38.84                                   
REMARK 500 13 ASN A  73       35.71     73.52                                   
REMARK 500 13 LEU A 103       41.61    -93.75                                   
REMARK 500 13 GLU A 108      148.02   -173.79                                   
REMARK 500 13 SER A 113      133.16    -35.54                                   
REMARK 500 14 SER A   2       85.11    -67.61                                   
REMARK 500 14 PRO A  13     -176.09    -69.81                                   
REMARK 500 14 ALA A  28      -73.16    -49.60                                   
REMARK 500 14 TYR A  31     -179.93    -53.93                                   
REMARK 500 14 LYS A  52      173.68    -52.79                                   
REMARK 500 14 ASP A  66      136.49    -38.68                                   
REMARK 500 14 SER A  89       32.14    -92.62                                   
REMARK 500 14 PRO A 101     -176.81    -69.81                                   
REMARK 500 14 LEU A 103       31.37    -89.19                                   
REMARK 500 14 GLU A 104       54.00    -93.02                                   
REMARK 500 15 SER A   3      105.80   -160.81                                   
REMARK 500 15 GLU A   8      124.25   -172.33                                   
REMARK 500 15 PRO A  13     -176.06    -69.76                                   
REMARK 500 15 SER A  24      -74.32    -93.27                                   
REMARK 500 15 ALA A  28      -62.10   -107.86                                   
REMARK 500 15 TYR A  31      -74.40    -38.20                                   
REMARK 500 15 GLU A  53      -72.41    -52.22                                   
REMARK 500 15 THR A  54       61.52   -104.59                                   
REMARK 500 15 LEU A  62      158.77    -45.69                                   
REMARK 500 15 PRO A 111       87.37    -69.79                                   
REMARK 500 15 SER A 112      130.69    -38.84                                   
REMARK 500 16 PRO A  13     -167.76    -69.69                                   
REMARK 500 16 THR A  54       37.69     30.76                                   
REMARK 500 16 ALA A  64       93.58    -66.27                                   
REMARK 500 16 SER A  89       33.14    -88.33                                   
REMARK 500 16 PRO A 111       89.81    -69.71                                   
REMARK 500 17 PRO A  13     -166.07    -69.78                                   
REMARK 500 17 LYS A  14      167.65    -45.04                                   
REMARK 500 17 ALA A  28      -72.77   -101.04                                   
REMARK 500 17 ALA A  57      -71.24    -36.89                                   
REMARK 500 17 LEU A  62      161.93    -47.73                                   
REMARK 500 17 LYS A  63      149.15   -170.54                                   
REMARK 500 17 ASN A  73       38.00     72.23                                   
REMARK 500 17 LEU A 103       41.91    -82.68                                   
REMARK 500 18 THR A  54       49.46    -77.39                                   
REMARK 500 18 SER A  81      -36.64    -39.60                                   
REMARK 500 18 GLU A 104       54.54   -103.27                                   
REMARK 500 18 PRO A 111       89.63    -69.76                                   
REMARK 500 18 SER A 113      102.91    -50.79                                   
REMARK 500 19 PRO A  13     -177.85    -69.74                                   
REMARK 500 19 ALA A  27      -38.80    -37.32                                   
REMARK 500 19 ALA A  28      -63.16   -121.02                                   
REMARK 500 19 TYR A  31     -174.97    -51.21                                   
REMARK 500 19 LYS A  52      175.03    -59.36                                   
REMARK 500 19 THR A  54       49.41     39.56                                   
REMARK 500 19 ASN A  73       34.68     72.70                                   
REMARK 500 19 LEU A 103      166.04    -43.48                                   
REMARK 500 19 GLU A 104      103.67    -34.99                                   
REMARK 500 19 VAL A 107       97.85    -64.01                                   
REMARK 500 19 SER A 113      -50.65   -127.61                                   
REMARK 500 20 PRO A  13     -178.82    -69.66                                   
REMARK 500 20 ALA A  27      -45.31   -132.52                                   
REMARK 500 20 GLU A  53      -73.55    -48.50                                   
REMARK 500 20 SER A  58      -70.35    -59.52                                   
REMARK 500 20 ALA A  64       96.59    -48.13                                   
REMARK 500 20 SER A  82      -70.11    -55.32                                   
REMARK 500 20 SER A  89       32.45    -94.41                                   
REMARK 500 20 GLU A 104       54.85   -108.25                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003000753.1   RELATED DB: TARGETDB                    
DBREF  2D8I A    8   108  GB     62087782 BAD92338       664    764             
SEQADV 2D8I GLY A    1  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    2  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    3  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A    4  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    5  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    6  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A    7  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  109  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A  110  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I PRO A  111  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  112  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  113  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A  114  GB   62087782            CLONING ARTIFACT               
SEQRES   1 A  114  GLY SER SER GLY SER SER GLY GLU ILE GLU ILE CYS PRO          
SEQRES   2 A  114  LYS VAL THR GLN SER ILE HIS ILE GLU LYS SER ASP THR          
SEQRES   3 A  114  ALA ALA ASP THR TYR GLY PHE SER LEU SER SER VAL GLU          
SEQRES   4 A  114  GLU ASP GLY ILE ARG ARG LEU TYR VAL ASN SER VAL LYS          
SEQRES   5 A  114  GLU THR GLY LEU ALA SER LYS LYS GLY LEU LYS ALA GLY          
SEQRES   6 A  114  ASP GLU ILE LEU GLU ILE ASN ASN ARG ALA ALA ASP ALA          
SEQRES   7 A  114  LEU ASN SER SER MET LEU LYS ASP PHE LEU SER GLN PRO          
SEQRES   8 A  114  SER LEU GLY LEU LEU VAL ARG THR TYR PRO GLU LEU GLU          
SEQRES   9 A  114  GLU GLY VAL GLU SER GLY PRO SER SER GLY                      
HELIX    1   1 LEU A   56  GLY A   61  1                                   6    
HELIX    2   2 ALA A   75  LEU A   79  5                                   5    
HELIX    3   3 ASN A   80  SER A   89  1                                  10    
SHEET    1   A 3 VAL A  15  GLU A  22  0                                        
SHEET    2   A 3 SER A  92  THR A  99 -1  O  THR A  99   N  VAL A  15           
SHEET    3   A 3 ILE A  68  ILE A  71 -1  N  LEU A  69   O  LEU A  96           
SHEET    1   B 2 SER A  34  GLU A  40  0                                        
SHEET    2   B 2 ILE A  43  SER A  50 -1  O  ARG A  45   N  VAL A  38           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000