PDB Short entry for 2D8I
HEADER    IMMUNE SYSTEM, SIGNALING PROTEIN        06-DEC-05   2D8I              
TITLE     SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL LYMPHOMA INVASION AND  
TITLE    2 METASTASIS 1 VARIAN                                                  
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: T-CELL LYMPHOMA INVASION AND METASTASIS 1 VARIANT;         
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PDZ DOMAIN;                                                
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: T1AM-1;                                                        
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050425-07;                               
SOURCE   8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    PDZ DOMAIN, T-CELL LYMPHOMA INVASION AND METASTASIS 1 VARIANT,        
KEYWDS   2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   4 INITIATIVE, RSGI, IMMUNE SYSTEM, SIGNALING PROTEIN                   
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS     
AUTHOR   2 INITIATIVE (RSGI)                                                    
REVDAT   3   09-MAR-22 2D8I    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2D8I    1       VERSN                                    
REVDAT   1   06-JUN-06 2D8I    0                                                
JRNL        AUTH   X.R.QIN,F.HAYASHI,S.YOKOYAMA                                 
JRNL        TITL   SOLUTION STRUCTURE OF THE PDZ DOMAIN OF T-CELL LYMPHOMA      
JRNL        TITL 2 INVASION AND METASTASIS 1 VARIAN                             
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1C, CYANA 2.0.17                              
REMARK   3   AUTHORS     : VARIAN (VNMR), GUNTERT, P. (CYANA)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D8I COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025119.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.29MM 13C,15N-LABELED PROTEIN;    
REMARK 210                                   20MM D-TRIS-HCL(PH7.0); 100MM      
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3;       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9296, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   3       43.03     36.54                                   
REMARK 500  1 SER A   6       55.23    -91.28                                   
REMARK 500  1 PRO A  13     -178.58    -69.75                                   
REMARK 500  1 ALA A  28      -59.74   -130.30                                   
REMARK 500  1 ASP A  29       96.72    -68.21                                   
REMARK 500  1 TYR A  31      162.34    -42.66                                   
REMARK 500  1 LYS A  60      -71.85    -60.67                                   
REMARK 500  1 ALA A  64       98.25    -60.61                                   
REMARK 500  1 ASN A  73       37.52     71.27                                   
REMARK 500  1 SER A 112       95.13    -49.16                                   
REMARK 500  2 SER A   6       42.50    -96.72                                   
REMARK 500  2 PRO A  13     -178.51    -69.76                                   
REMARK 500  2 LYS A  14      171.15    -54.82                                   
REMARK 500  2 ALA A  28      -70.97   -127.85                                   
REMARK 500  2 TYR A  31     -176.83    -53.92                                   
REMARK 500  2 THR A  54       63.90   -104.43                                   
REMARK 500  2 ALA A  57      -72.53    -34.00                                   
REMARK 500  2 ASP A  66      173.90    -46.74                                   
REMARK 500  2 ASN A  73       34.36     72.94                                   
REMARK 500  2 GLU A 108       29.90     39.64                                   
REMARK 500  3 PRO A  13     -174.74    -69.74                                   
REMARK 500  3 ASP A  25       55.04     74.89                                   
REMARK 500  3 THR A  26      -30.71    -35.76                                   
REMARK 500  3 ALA A  27      -39.88    -33.87                                   
REMARK 500  3 ALA A  28      -64.82   -121.21                                   
REMARK 500  3 TYR A  31      151.07    -43.72                                   
REMARK 500  3 ALA A  57      -36.41    -33.52                                   
REMARK 500  3 ALA A  64       90.61    -62.76                                   
REMARK 500  3 ASN A  73       40.49     71.65                                   
REMARK 500  3 LEU A 103       46.28    -85.87                                   
REMARK 500  4 PRO A  13     -170.16    -69.75                                   
REMARK 500  4 THR A  26      -73.45   -123.30                                   
REMARK 500  4 TYR A  31      169.19    -44.53                                   
REMARK 500  4 ALA A  57      -74.57    -36.48                                   
REMARK 500  4 LEU A  62      160.57    -45.40                                   
REMARK 500  4 LYS A  63      148.16   -171.76                                   
REMARK 500  4 ALA A  64      104.54    -54.62                                   
REMARK 500  5 SER A   3       43.38    -86.25                                   
REMARK 500  5 SER A   5       97.50    -47.81                                   
REMARK 500  5 ALA A  28      -61.37   -106.95                                   
REMARK 500  5 TYR A  31      150.28    -37.54                                   
REMARK 500  5 SER A  89       36.26    -91.15                                   
REMARK 500  5 GLU A 104       40.35   -102.80                                   
REMARK 500  5 VAL A 107      107.71    -53.56                                   
REMARK 500  5 SER A 112      100.06    -58.72                                   
REMARK 500  6 CYS A  12      136.68    -37.43                                   
REMARK 500  6 PRO A  13     -164.34    -69.79                                   
REMARK 500  6 LYS A  14      152.56    -38.12                                   
REMARK 500  6 TYR A  31      -71.74    -34.43                                   
REMARK 500  6 ASN A  73       31.02     72.67                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     176 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003000753.1   RELATED DB: TARGETDB                    
DBREF  2D8I A    8   108  GB     62087782 BAD92338       664    764             
SEQADV 2D8I GLY A    1  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    2  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    3  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A    4  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    5  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A    6  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A    7  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  109  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A  110  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I PRO A  111  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  112  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I SER A  113  GB   62087782            CLONING ARTIFACT               
SEQADV 2D8I GLY A  114  GB   62087782            CLONING ARTIFACT               
SEQRES   1 A  114  GLY SER SER GLY SER SER GLY GLU ILE GLU ILE CYS PRO          
SEQRES   2 A  114  LYS VAL THR GLN SER ILE HIS ILE GLU LYS SER ASP THR          
SEQRES   3 A  114  ALA ALA ASP THR TYR GLY PHE SER LEU SER SER VAL GLU          
SEQRES   4 A  114  GLU ASP GLY ILE ARG ARG LEU TYR VAL ASN SER VAL LYS          
SEQRES   5 A  114  GLU THR GLY LEU ALA SER LYS LYS GLY LEU LYS ALA GLY          
SEQRES   6 A  114  ASP GLU ILE LEU GLU ILE ASN ASN ARG ALA ALA ASP ALA          
SEQRES   7 A  114  LEU ASN SER SER MET LEU LYS ASP PHE LEU SER GLN PRO          
SEQRES   8 A  114  SER LEU GLY LEU LEU VAL ARG THR TYR PRO GLU LEU GLU          
SEQRES   9 A  114  GLU GLY VAL GLU SER GLY PRO SER SER GLY                      
HELIX    1   1 LEU A   56  GLY A   61  1                                   6    
HELIX    2   2 ALA A   75  LEU A   79  5                                   5    
HELIX    3   3 ASN A   80  SER A   89  1                                  10    
SHEET    1   A 3 VAL A  15  GLU A  22  0                                        
SHEET    2   A 3 SER A  92  THR A  99 -1  O  THR A  99   N  VAL A  15           
SHEET    3   A 3 ILE A  68  ILE A  71 -1  N  LEU A  69   O  LEU A  96           
SHEET    1   B 2 SER A  34  GLU A  40  0                                        
SHEET    2   B 2 ILE A  43  SER A  50 -1  O  ARG A  45   N  VAL A  38           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000