PDB Short entry for 2D9F
HEADER    ISOMERASE                               09-DEC-05   2D9F              
TITLE     SOLUTION STRUCTURE OF RUH-047, AN FKBP DOMAIN FROM HUMAN CDNA         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: FK506-BINDING PROTEIN 8 VARIANT;                           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 8-129;                                            
COMPND   5 SYNONYM: FK506-BINDING DOMAIN, FKBP;                                 
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   6 EXPRESSION_SYSTEM_PLASMID: P040614-07;                               
SOURCE   7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    FKBP, FK506 BINDING PROTEIN, RAPAMYCIN, STRUCTURAL GENOMICS, NPPSFA,  
KEYWDS   2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,      
KEYWDS   3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    A.Z.M.RUHUL MOMEN,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN        
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2D9F    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2D9F    1       VERSN                                    
REVDAT   1   09-JUN-06 2D9F    0                                                
JRNL        AUTH   A.Z.M.RUHUL MOMEN,H.HIROTA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA     
JRNL        TITL   SOLUTION STRUCTURE OF RUH-047, AN FKBP DOMAIN FROM HUMAN     
JRNL        TITL 2 CDNA                                                         
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.6, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D9F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025150.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM NACL                         
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.01MM DOMAIN U-15N, 13C; 20MM D   
REMARK 210                                   -TRIS-HCL (PH7.0); 100MM NACL;     
REMARK 210                                   1MM D-DTT; 0.02% NAN3; 90%H2O,     
REMARK 210                                   10%D2O                             
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.04,    
REMARK 210                                   KUJIRA 0.9295                      
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 TRP A  10      161.20    -40.68                                   
REMARK 500  1 LEU A  18      -71.02    -60.08                                   
REMARK 500  1 PRO A  34     -170.09    -69.76                                   
REMARK 500  1 GLU A  59       73.51   -112.39                                   
REMARK 500  1 PRO A  78        2.95    -69.76                                   
REMARK 500  1 CYS A  95      -71.22    -77.19                                   
REMARK 500  1 PRO A  98        2.81    -69.78                                   
REMARK 500  1 ARG A 102      -69.79   -107.14                                   
REMARK 500  1 HIS A 109       26.40     48.43                                   
REMARK 500  1 ALA A 111      159.44    -46.56                                   
REMARK 500  1 LYS A 119      -61.03    -93.74                                   
REMARK 500  1 MET A 129       51.71     34.76                                   
REMARK 500  2 GLU A   8       40.30   -107.61                                   
REMARK 500  2 ARG A  33      139.84    -37.78                                   
REMARK 500  2 PRO A  34     -170.20    -69.75                                   
REMARK 500  2 PRO A  78        3.13    -69.78                                   
REMARK 500  2 ARG A 102      -65.01   -105.59                                   
REMARK 500  2 HIS A 109       27.49     43.52                                   
REMARK 500  2 ALA A 111      160.50    -48.39                                   
REMARK 500  2 SER A 130      173.40    -53.34                                   
REMARK 500  3 SER A   2      107.06    -41.76                                   
REMARK 500  3 LEU A  18      -70.27    -62.00                                   
REMARK 500  3 SER A  32      136.27   -171.71                                   
REMARK 500  3 ARG A  33      137.42    -39.22                                   
REMARK 500  3 PRO A  34     -164.04    -69.73                                   
REMARK 500  3 GLU A  59       74.06   -110.17                                   
REMARK 500  3 PRO A  78        4.28    -69.76                                   
REMARK 500  3 SER A  92      -36.38    -36.71                                   
REMARK 500  3 CYS A  95      -72.54    -78.82                                   
REMARK 500  3 SER A 103      105.38   -160.13                                   
REMARK 500  3 HIS A 109       25.24     45.45                                   
REMARK 500  3 ALA A 111      159.09    -46.66                                   
REMARK 500  3 GLU A 128       77.50    -65.29                                   
REMARK 500  4 LEU A  18      -70.16    -64.79                                   
REMARK 500  4 SER A  31      170.19    -57.88                                   
REMARK 500  4 PRO A  34     -172.89    -69.80                                   
REMARK 500  4 PRO A  78        4.90    -69.79                                   
REMARK 500  4 CYS A  95      -73.42    -78.94                                   
REMARK 500  4 PRO A  98        2.77    -69.73                                   
REMARK 500  4 ARG A 102      -65.02   -105.79                                   
REMARK 500  4 ALA A 111      160.34    -43.06                                   
REMARK 500  4 LEU A 127       96.18    -57.46                                   
REMARK 500  4 SER A 133      163.13    -43.52                                   
REMARK 500  5 SER A   2      165.79    -48.79                                   
REMARK 500  5 GLU A   8       31.83    -93.73                                   
REMARK 500  5 SER A  31      170.91    -52.40                                   
REMARK 500  5 PRO A  34     -165.17    -69.75                                   
REMARK 500  5 PRO A  78        3.25    -69.76                                   
REMARK 500  5 CYS A  95      -71.42    -74.46                                   
REMARK 500  5 PRO A  98        1.33    -69.80                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     207 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSS001001573.1   RELATED DB: TARGETDB                    
DBREF  2D9F A    8   129  GB     62897235 BAD96558        50    171             
SEQADV 2D9F GLY A    1  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A    2  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A    3  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F GLY A    4  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A    5  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A    6  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F GLY A    7  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A  130  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F GLY A  131  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F PRO A  132  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A  133  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F SER A  134  GB   62897235            CLONING ARTIFACT               
SEQADV 2D9F GLY A  135  GB   62897235            CLONING ARTIFACT               
SEQRES   1 A  135  GLY SER SER GLY SER SER GLY GLU GLU TRP LEU ASP ILE          
SEQRES   2 A  135  LEU GLY ASN GLY LEU LEU ARG LYS LYS THR LEU VAL PRO          
SEQRES   3 A  135  GLY PRO PRO GLY SER SER ARG PRO VAL LYS GLY GLN VAL          
SEQRES   4 A  135  VAL THR VAL HIS LEU GLN THR SER LEU GLU ASN GLY THR          
SEQRES   5 A  135  ARG VAL GLN GLU GLU PRO GLU LEU VAL PHE THR LEU GLY          
SEQRES   6 A  135  ASP CYS ASP VAL ILE GLN ALA LEU ASP LEU SER VAL PRO          
SEQRES   7 A  135  LEU MET ASP VAL GLY GLU THR ALA MET VAL THR ALA ASP          
SEQRES   8 A  135  SER LYS TYR CYS TYR GLY PRO GLN GLY SER ARG SER PRO          
SEQRES   9 A  135  TYR ILE PRO PRO HIS ALA ALA LEU CYS LEU GLU VAL THR          
SEQRES  10 A  135  LEU LYS THR ALA VAL ASP ARG PRO ASP LEU GLU MET SER          
SEQRES  11 A  135  GLY PRO SER SER GLY                                          
HELIX    1   1 SER A   76  MET A   80  5                                   5    
HELIX    2   2 ASP A   91  TYR A   96  1                                   6    
SHEET    1   A 6 LEU A  11  ASP A  12  0                                        
SHEET    2   A 6 ARG A  20  VAL A  25 -1  O  LYS A  21   N  LEU A  11           
SHEET    3   A 6 THR A  85  ALA A  90 -1  O  MET A  87   N  LYS A  22           
SHEET    4   A 6 LEU A 112  VAL A 122 -1  O  LEU A 114   N  VAL A  88           
SHEET    5   A 6 VAL A  39  LEU A  48 -1  N  SER A  47   O  CYS A 113           
SHEET    6   A 6 ARG A  53  THR A  63 -1  O  LEU A  60   N  VAL A  42           
CISPEP   1 SER A  103    PRO A  104          1        -0.01                     
CISPEP   2 SER A  103    PRO A  104          2         0.01                     
CISPEP   3 SER A  103    PRO A  104          3        -0.06                     
CISPEP   4 SER A  103    PRO A  104          4        -0.03                     
CISPEP   5 SER A  103    PRO A  104          5        -0.04                     
CISPEP   6 SER A  103    PRO A  104          6         0.00                     
CISPEP   7 SER A  103    PRO A  104          7        -0.12                     
CISPEP   8 SER A  103    PRO A  104          8        -0.04                     
CISPEP   9 SER A  103    PRO A  104          9        -0.10                     
CISPEP  10 SER A  103    PRO A  104         10         0.03                     
CISPEP  11 SER A  103    PRO A  104         11        -0.05                     
CISPEP  12 SER A  103    PRO A  104         12         0.04                     
CISPEP  13 SER A  103    PRO A  104         13        -0.03                     
CISPEP  14 SER A  103    PRO A  104         14        -0.06                     
CISPEP  15 SER A  103    PRO A  104         15        -0.04                     
CISPEP  16 SER A  103    PRO A  104         16        -0.06                     
CISPEP  17 SER A  103    PRO A  104         17        -0.01                     
CISPEP  18 SER A  103    PRO A  104         18         0.05                     
CISPEP  19 SER A  103    PRO A  104         19        -0.02                     
CISPEP  20 SER A  103    PRO A  104         20        -0.08                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000