PDB Short entry for 2D9H
HEADER    DNA BINDING PROTEIN                     09-DEC-05   2D9H              
TITLE     SOLUTION STRUCTURE OF THE FORTH AND FIFTH ZF-C2H2 DOMAINS             
TITLE    2 OF ZINC FINGER PROTEIN 692                                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ZINC FINGER PROTEIN 692;                                   
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: ZF-C2H2 DOMAIN;                                            
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ZNF692;                                                        
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050302-52;                               
SOURCE   8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    ZF-C2H2 DOMAIN, ZINC FINGER PROTEIN 692, STRUCTURAL                   
KEYWDS   2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL             
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                            
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, DNA BINDING PROTEIN            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    H.P.ZHANG,T.NAGASIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL            
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   2   24-FEB-09 2D9H    1       VERSN                                    
REVDAT   1   09-JUN-06 2D9H    0                                                
JRNL        AUTH   H.P.ZHANG,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA                   
JRNL        TITL   SOLUTION STRUCTURE OF THE FORTH AND FIFTH ZF-C2H2            
JRNL        TITL 2 DOMAINS OF ZINC FINGER PROTEIN 692                           
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTENT,P.                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D9H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB025152.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.25MM 13C, 15N-LABELED            
REMARK 210                                   PROTEIN; 20MM D-TRIS-              
REMARK 210                                   HCL(PH7.0), 100MM NACL, 1MM D-     
REMARK 210                                   DTT, 0.02% NAN3, 50UM ZNCL2+       
REMARK 210                                   1MM IDA                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1C, NMRPIPE 20031121,       
REMARK 210                                   NMRVIEW 5.04, KUJIRA 0.93191,      
REMARK 210                                   CYANA 2.0.17                       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES        
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 VAL A  34      -35.95    -39.80                                   
REMARK 500  1 LYS A  46     -178.27    -51.96                                   
REMARK 500  1 PRO A  69     -175.74    -69.79                                   
REMARK 500  1 GLN A  70      175.29    -56.22                                   
REMARK 500  2 LYS A  46     -179.54    -52.05                                   
REMARK 500  2 LEU A  67      175.28    -57.73                                   
REMARK 500  2 SER A  77      -62.17    -91.65                                   
REMARK 500  3 VAL A  34      -34.07    -37.82                                   
REMARK 500  3 GLU A  42        1.37    -68.46                                   
REMARK 500  3 LYS A  46     -179.68    -52.07                                   
REMARK 500  3 LEU A  67      174.60    -57.36                                   
REMARK 500  3 PRO A  69     -174.29    -69.80                                   
REMARK 500  4 VAL A  34      -36.38    -34.13                                   
REMARK 500  4 LYS A  46      179.77    -52.16                                   
REMARK 500  4 PRO A  69       84.42    -69.80                                   
REMARK 500  5 VAL A  34      -37.02    -34.87                                   
REMARK 500  5 LYS A  46     -179.72    -53.57                                   
REMARK 500  6 LYS A  46     -179.25    -52.10                                   
REMARK 500  6 LEU A  67      177.79    -56.16                                   
REMARK 500  6 PRO A  69        9.76    -69.77                                   
REMARK 500  7 LYS A  46     -178.98    -51.99                                   
REMARK 500  7 PRO A  69     -168.46    -69.76                                   
REMARK 500  8 VAL A  34      -37.71    -32.17                                   
REMARK 500  8 ALA A  36      -39.37    -34.49                                   
REMARK 500  8 LYS A  46     -179.26    -52.71                                   
REMARK 500  8 PRO A  69       80.14    -69.75                                   
REMARK 500  9 LYS A  46     -179.43    -52.12                                   
REMARK 500 10 VAL A  34      -37.45    -38.08                                   
REMARK 500 10 GLU A  42        0.83    -66.95                                   
REMARK 500 10 LYS A  46     -177.90    -52.12                                   
REMARK 500 10 PRO A  69     -175.19    -69.79                                   
REMARK 500 11 GLU A  42        0.03    -67.40                                   
REMARK 500 11 LYS A  46      179.65    -51.97                                   
REMARK 500 11 PRO A  69     -179.76    -69.77                                   
REMARK 500 12 VAL A  34      -35.15    -32.82                                   
REMARK 500 12 LYS A  46     -179.08    -52.32                                   
REMARK 500 12 LEU A  67      170.28    -57.14                                   
REMARK 500 12 PRO A  69     -173.71    -69.79                                   
REMARK 500 12 PRO A  75       15.28    -69.84                                   
REMARK 500 13 ALA A  21      -38.92    -33.10                                   
REMARK 500 13 VAL A  34      -31.67    -36.42                                   
REMARK 500 13 LYS A  46     -178.80    -52.13                                   
REMARK 500 13 LEU A  67      173.63    -57.14                                   
REMARK 500 13 PRO A  75       87.53    -69.77                                   
REMARK 500 14 ILE A  12      -70.17    -56.19                                   
REMARK 500 14 VAL A  34      -29.76    -35.99                                   
REMARK 500 14 GLU A  42        1.80    -69.78                                   
REMARK 500 14 LYS A  46     -177.82    -52.30                                   
REMARK 500 14 PRO A  75     -174.45    -69.74                                   
REMARK 500 15 LYS A  46     -179.22    -52.04                                   
REMARK 500 16 ILE A  12      -70.42    -55.82                                   
REMARK 500 16 LYS A  46     -179.38    -52.03                                   
REMARK 500 16 LEU A  67      176.86    -57.96                                   
REMARK 500 16 GLU A  71      104.34    -55.14                                   
REMARK 500 16 PRO A  75       87.27    -69.74                                   
REMARK 500 17 VAL A  34      -32.04    -34.35                                   
REMARK 500 17 GLU A  42        0.02    -68.06                                   
REMARK 500 17 LYS A  46     -176.79    -52.09                                   
REMARK 500 17 PRO A  75     -165.61    -69.83                                   
REMARK 500 18 GLU A  42        0.61    -68.80                                   
REMARK 500 18 LYS A  46      179.96    -51.98                                   
REMARK 500 18 PRO A  75       88.64    -69.76                                   
REMARK 500 19 VAL A  34      -29.18    -37.43                                   
REMARK 500 19 LYS A  46     -178.71    -52.01                                   
REMARK 500 19 LEU A  67      178.06    -57.47                                   
REMARK 500 20 ALA A  36      -27.39    -38.13                                   
REMARK 500 20 LYS A  46     -179.29    -52.06                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620  (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;              
REMARK 620  SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                            
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  10   SG                                                     
REMARK 620 2 CYS A  13   SG  112.6                                              
REMARK 620 3 HIS A  26   NE2 106.2 110.0                                        
REMARK 620 4 HIS A  30   NE2 116.0 109.5 101.8                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 401  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  41   SG                                                     
REMARK 620 2 CYS A  44   SG  103.7                                              
REMARK 620 3 HIS A  57   NE2 105.9 112.6                                        
REMARK 620 4 HIS A  62   NE2 116.5 105.9 112.2                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201                  
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSI002004816.2   RELATED DB: TARGETDB                    
DBREF  2D9H A    8    72  GB     21361766 NP_060335      417    481             
SEQADV 2D9H GLY A    1  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A    2  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A    3  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H GLY A    4  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A    5  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A    6  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H GLY A    7  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A   73  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H GLY A   74  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H PRO A   75  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A   76  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H SER A   77  GB   21361766            CLONING ARTIFACT               
SEQADV 2D9H GLY A   78  GB   21361766            CLONING ARTIFACT               
SEQRES   1 A   78  GLY SER SER GLY SER SER GLY LEU GLN CYS GLU ILE CYS          
SEQRES   2 A   78  GLY PHE THR CYS ARG GLN LYS ALA SER LEU ASN TRP HIS          
SEQRES   3 A   78  GLN ARG LYS HIS ALA GLU THR VAL ALA ALA LEU ARG PHE          
SEQRES   4 A   78  PRO CYS GLU PHE CYS GLY LYS ARG PHE GLU LYS PRO ASP          
SEQRES   5 A   78  SER VAL ALA ALA HIS ARG SER LYS SER HIS PRO ALA LEU          
SEQRES   6 A   78  LEU LEU ALA PRO GLN GLU SER SER GLY PRO SER SER GLY          
HET     ZN  A 201       1                                                       
HET     ZN  A 401       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 GLN A   19  VAL A   34  1                                  16    
HELIX    2   2 LYS A   50  SER A   61  1                                  12    
SHEET    1   A 2 LEU A   8  GLN A   9  0                                        
SHEET    2   A 2 THR A  16  CYS A  17 -1  O  CYS A  17   N  LEU A   8           
SHEET    1   B 2 PHE A  39  PRO A  40  0                                        
SHEET    2   B 2 ARG A  47  PHE A  48 -1  O  PHE A  48   N  PHE A  39           
LINK        ZN    ZN A 201                 SG  CYS A  10     1555   1555  2.34  
LINK        ZN    ZN A 201                 SG  CYS A  13     1555   1555  2.29  
LINK        ZN    ZN A 201                 NE2 HIS A  26     1555   1555  2.05  
LINK        ZN    ZN A 201                 NE2 HIS A  30     1555   1555  2.01  
LINK        ZN    ZN A 401                 SG  CYS A  41     1555   1555  2.34  
LINK        ZN    ZN A 401                 SG  CYS A  44     1555   1555  2.31  
LINK        ZN    ZN A 401                 NE2 HIS A  57     1555   1555  2.03  
LINK        ZN    ZN A 401                 NE2 HIS A  62     1555   1555  2.04  
SITE     1 AC1  4 CYS A  10  CYS A  13  HIS A  26  HIS A  30                    
SITE     1 AC2  4 CYS A  41  CYS A  44  HIS A  57  HIS A  62                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000