PDB Short entry for 2D9M
HEADER    RNA BINDING PROTEIN                     12-DEC-05   2D9M              
TITLE     SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 3 IN ZINC FINGER   
TITLE    2 CCCH-TYPE DOMAIN CONTAINING 7A                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ZINC FINGER CCCH-TYPE DOMAIN CONTAINING PROTEIN 7A;        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CCCH-TYPE ZINC FINGER MOTIF;                               
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ZC3H7A;                                                        
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050302-09;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    CCCH ZINC-FINGER, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON    
KEYWDS   2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL         
KEYWDS   3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN    
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2D9M    1       REMARK SEQADV LINK                       
REVDAT   2   24-FEB-09 2D9M    1       VERSN                                    
REVDAT   1   12-JUN-06 2D9M    0                                                
JRNL        AUTH   C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA 
JRNL        TITL   SOLUTION STRUCTURE OF CCCH TYPE ZINC-FINGER DOMAIN 3 IN ZINC 
JRNL        TITL 2 FINGER CCCH-TYPE DOMAIN CONTAINING 7A                        
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0                               
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT,P (CYANA)                  
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2D9M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025157.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 100MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 20MM D-TRIS-HCL(PH7.0), 100MM      
REMARK 210                                   NACL, 1MM D-DTT, 0.02% NAN3,       
REMARK 210                                   50UM ZNCL2+1MM IDA, 90% H2O, 10%   
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20030801, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.93191, CYANA 2.0          
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINTED MOLECULAR DYNAMICS     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A 900       96.47    -69.77                                   
REMARK 500  1 THR A 901      -33.03    -34.36                                   
REMARK 500  1 GLU A 917      -71.83    -56.11                                   
REMARK 500  1 SER A 920       31.69    -87.04                                   
REMARK 500  1 ALA A 947      100.05    -50.44                                   
REMARK 500  2 SER A 890       30.40    -96.57                                   
REMARK 500  2 GLN A 892       79.80   -105.23                                   
REMARK 500  2 CYS A 894       40.35   -100.12                                   
REMARK 500  2 TRP A 895       98.54    -52.28                                   
REMARK 500  2 ARG A 898      161.17    -47.58                                   
REMARK 500  2 PRO A 900       93.22    -69.76                                   
REMARK 500  2 THR A 901      -36.49    -33.04                                   
REMARK 500  2 PHE A 904       54.39    -97.95                                   
REMARK 500  2 GLU A 917      -72.34    -63.25                                   
REMARK 500  2 HIS A 925       73.28   -114.20                                   
REMARK 500  2 ASN A 945       45.21    -80.77                                   
REMARK 500  2 SER A 948      -39.18    -34.73                                   
REMARK 500  2 SER A 951       40.77     36.19                                   
REMARK 500  2 SER A 952      129.55    -34.82                                   
REMARK 500  3 CYS A 894       43.08    -81.66                                   
REMARK 500  3 TRP A 895      100.85    -48.85                                   
REMARK 500  3 PRO A 900       99.06    -69.73                                   
REMARK 500  3 THR A 901      -27.98    -37.30                                   
REMARK 500  3 PHE A 904       55.02   -107.00                                   
REMARK 500  4 SER A 889      142.29    -36.21                                   
REMARK 500  4 TYR A 893      107.04   -168.07                                   
REMARK 500  4 CYS A 894       77.42   -115.03                                   
REMARK 500  4 ARG A 898       99.48    -62.73                                   
REMARK 500  4 PHE A 899      139.95    -34.04                                   
REMARK 500  4 PRO A 900       93.85    -69.73                                   
REMARK 500  4 THR A 901      -37.09    -32.66                                   
REMARK 500  4 PHE A 904       57.00   -119.31                                   
REMARK 500  4 GLU A 917      -70.77    -54.82                                   
REMARK 500  4 HIS A 925       73.38   -115.83                                   
REMARK 500  4 ARG A 936      -70.25    -33.99                                   
REMARK 500  4 MET A 942      -38.63    -35.27                                   
REMARK 500  4 PRO A 950        5.44    -69.79                                   
REMARK 500  5 SER A 886       91.91    -58.32                                   
REMARK 500  5 TYR A 893       94.19    -52.56                                   
REMARK 500  5 CYS A 894       40.57   -107.28                                   
REMARK 500  5 TRP A 895       93.73    -53.24                                   
REMARK 500  5 ARG A 898       96.46    -61.91                                   
REMARK 500  5 PHE A 899      139.75    -32.13                                   
REMARK 500  5 THR A 901      -31.10    -38.12                                   
REMARK 500  5 GLU A 917      -74.81    -59.54                                   
REMARK 500  5 LYS A 946       38.43    -90.46                                   
REMARK 500  6 TRP A 895       76.20    -67.27                                   
REMARK 500  6 PRO A 900       94.62    -69.71                                   
REMARK 500  6 THR A 901      -33.10    -34.00                                   
REMARK 500  6 MET A 942      -37.53    -35.74                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     152 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A1085  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A 907   SG                                                     
REMARK 620 2 CYS A 915   SG  113.4                                              
REMARK 620 3 CYS A 921   SG  118.5 114.3                                        
REMARK 620 4 HIS A 925   NE2 114.0  92.1 100.7                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1085                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSI002012167.1   RELATED DB: TARGETDB                    
DBREF  2D9M A  892   947  UNP    Q8IWR0   Z3H7A_HUMAN    892    947             
SEQADV 2D9M GLY A  885  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  886  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  887  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M GLY A  888  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  889  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  890  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M GLY A  891  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  948  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M GLY A  949  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M PRO A  950  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  951  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M SER A  952  UNP  Q8IWR0              CLONING ARTIFACT               
SEQADV 2D9M GLY A  953  UNP  Q8IWR0              CLONING ARTIFACT               
SEQRES   1 A   69  GLY SER SER GLY SER SER GLY GLN TYR CYS TRP GLN HIS          
SEQRES   2 A   69  ARG PHE PRO THR GLY TYR PHE SER ILE CYS ASP ARG TYR          
SEQRES   3 A   69  MET ASN GLY THR CYS PRO GLU GLY ASN SER CYS LYS PHE          
SEQRES   4 A   69  ALA HIS GLY ASN ALA GLU LEU HIS GLU TRP GLU GLU ARG          
SEQRES   5 A   69  ARG ASP ALA LEU LYS MET LYS LEU ASN LYS ALA SER GLY          
SEQRES   6 A   69  PRO SER SER GLY                                              
HET     ZN  A1085       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    ZN 2+                                                        
HELIX    1   1 CYS A  907  GLY A  913  1                                   7    
HELIX    2   2 GLY A  926  LYS A  941  1                                  16    
LINK         SG  CYS A 907                ZN    ZN A1085     1555   1555  2.33  
LINK         SG  CYS A 915                ZN    ZN A1085     1555   1555  2.33  
LINK         SG  CYS A 921                ZN    ZN A1085     1555   1555  2.33  
LINK         NE2 HIS A 925                ZN    ZN A1085     1555   1555  2.34  
SITE     1 AC1  4 CYS A 907  CYS A 915  CYS A 921  HIS A 925                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000