PDB Short entry for 2DA1 HEADER TRANSCRIPTION 13-DEC-05 2DA1 TITLE SOLUTION STRUCTURE OF THE FIRST HOMEOBOX DOMAIN OF AT- TITLE 2 BINDING TRANSCRIPTION FACTOR 1 (ATBF1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-FETOPROTEIN ENHANCER BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE FIRST HOMEOBOX DOMAIN; COMPND 5 SYNONYM: AT MOTIF-BINDING FACTOR, AT-BINDING TRANSCRIPTION COMPND 6 FACTOR 1, ATBF1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATBF1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050322-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX- KEYWDS 2 TURN-HELIX MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.OHNISHI,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DA1 1 VERSN REVDAT 1 13-JUN-06 2DA1 0 JRNL AUTH S.OHNISHI,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST HOMEOBOX DOMAIN OF JRNL TITL 2 AT-BINDING TRANSCRIPTION FACTOR 1 (ATBF1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DA1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025172. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM PROTEIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -61.87 -125.19 REMARK 500 1 SER A 5 134.19 -172.57 REMARK 500 1 LYS A 8 -54.07 -121.78 REMARK 500 1 THR A 12 158.74 -41.86 REMARK 500 1 GLN A 64 150.55 -44.97 REMARK 500 2 ARG A 11 -61.55 -90.65 REMARK 500 2 ASN A 30 -70.14 -34.27 REMARK 500 2 GLU A 34 -32.02 -35.12 REMARK 500 3 ARG A 11 155.25 -38.74 REMARK 500 3 ASN A 30 -70.73 -34.34 REMARK 500 3 GLU A 34 -27.85 -39.74 REMARK 500 3 SER A 68 141.74 -34.50 REMARK 500 4 THR A 12 103.06 -48.60 REMARK 500 4 GLU A 34 -36.06 -35.79 REMARK 500 4 PRO A 67 92.72 -69.76 REMARK 500 4 SER A 68 92.73 -61.70 REMARK 500 5 LYS A 8 161.24 -43.06 REMARK 500 5 ASN A 30 -70.71 -44.31 REMARK 500 5 GLU A 34 -32.06 -35.74 REMARK 500 5 SER A 65 127.21 -36.92 REMARK 500 5 PRO A 67 0.16 -69.82 REMARK 500 6 PRO A 10 1.75 -69.81 REMARK 500 6 THR A 12 53.40 -93.91 REMARK 500 6 ASN A 30 -70.44 -40.33 REMARK 500 6 PRO A 67 2.81 -69.84 REMARK 500 7 SER A 3 96.04 -54.18 REMARK 500 7 PRO A 10 94.97 -69.76 REMARK 500 7 ASN A 30 -70.86 -35.24 REMARK 500 7 GLU A 34 -28.97 -36.96 REMARK 500 7 GLN A 64 46.36 -94.41 REMARK 500 8 LYS A 8 53.66 -92.43 REMARK 500 8 GLU A 34 -29.51 -36.72 REMARK 500 8 PRO A 47 -178.99 -69.68 REMARK 500 8 SER A 65 137.91 -39.78 REMARK 500 9 ASN A 30 -70.45 -34.52 REMARK 500 9 GLU A 34 -27.43 -38.89 REMARK 500 9 SER A 69 98.96 -57.01 REMARK 500 10 SER A 2 145.97 -37.55 REMARK 500 10 ASN A 30 -70.89 -34.31 REMARK 500 10 GLU A 34 -33.09 -34.39 REMARK 500 10 PRO A 67 95.75 -69.81 REMARK 500 11 ARG A 13 112.85 -166.60 REMARK 500 11 ASN A 29 118.33 -160.46 REMARK 500 11 GLU A 34 -31.09 -38.10 REMARK 500 11 GLN A 64 157.11 -38.20 REMARK 500 12 GLU A 34 -30.75 -36.20 REMARK 500 12 PHE A 60 -36.87 -39.22 REMARK 500 13 SER A 2 -41.55 -134.15 REMARK 500 13 ASN A 30 -71.69 -40.18 REMARK 500 13 GLU A 34 -27.76 -39.93 REMARK 500 14 SER A 3 41.45 -81.48 REMARK 500 14 GLU A 34 -29.34 -38.51 REMARK 500 15 THR A 12 109.66 -41.58 REMARK 500 15 GLU A 34 -27.73 -39.49 REMARK 500 15 SER A 65 161.17 -47.96 REMARK 500 15 SER A 68 151.58 -48.46 REMARK 500 16 LYS A 8 44.23 39.61 REMARK 500 16 ASN A 30 -70.39 -35.66 REMARK 500 16 GLU A 34 -28.65 -37.85 REMARK 500 16 PRO A 67 85.39 -69.79 REMARK 500 17 LYS A 8 173.17 -46.67 REMARK 500 17 GLU A 34 -27.27 -38.12 REMARK 500 18 ASN A 29 122.52 -170.01 REMARK 500 18 GLU A 34 -25.73 -39.51 REMARK 500 18 SER A 65 117.81 -165.60 REMARK 500 18 SER A 68 91.91 -49.84 REMARK 500 19 GLU A 34 -30.56 -36.21 REMARK 500 20 SER A 6 137.95 -174.57 REMARK 500 20 PRO A 10 88.46 -69.76 REMARK 500 20 ASN A 30 -70.62 -38.06 REMARK 500 20 GLU A 34 -26.88 -38.38 REMARK 500 20 PRO A 47 -173.63 -69.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000131.2 RELATED DB: TARGETDB DBREF 2DA1 A 8 64 UNP Q15911 ATBF1_HUMAN 2146 2202 SEQADV 2DA1 GLY A 1 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 2 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 3 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 GLY A 4 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 5 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 6 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 GLY A 7 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 65 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 GLY A 66 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 PRO A 67 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 68 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 SER A 69 UNP Q15911 CLONING ARTIFACT SEQADV 2DA1 GLY A 70 UNP Q15911 CLONING ARTIFACT SEQRES 1 A 70 GLY SER SER GLY SER SER GLY LYS ARG PRO ARG THR ARG SEQRES 2 A 70 ILE THR ASP ASP GLN LEU ARG VAL LEU ARG GLN TYR PHE SEQRES 3 A 70 ASP ILE ASN ASN SER PRO SER GLU GLU GLN ILE LYS GLU SEQRES 4 A 70 MET ALA ASP LYS SER GLY LEU PRO GLN LYS VAL ILE LYS SEQRES 5 A 70 HIS TRP PHE ARG ASN THR LEU PHE LYS GLU ARG GLN SER SEQRES 6 A 70 GLY PRO SER SER GLY HELIX 1 1 THR A 15 ASN A 29 1 15 HELIX 2 2 GLU A 35 GLY A 45 1 11 HELIX 3 3 PRO A 47 GLN A 64 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000