PDB Short entry for 2DA2
HEADER    TRANSCRIPTION                           13-DEC-05   2DA2              
TITLE     SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN OF AT-               
TITLE    2 BINDING TRANSCRIPTION FACTOR 1 (ATBF1)                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ALPHA-FETOPROTEIN ENHANCER BINDING PROTEIN;                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: THE SECOND HOMEOBOX DOMAIN;                                
COMPND   5 SYNONYM: AT MOTIF-BINDING FACTOR, AT-BINDING TRANSCRIPTION           
COMPND   6 FACTOR 1, ATBF1;                                                     
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ATBF1;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050620-20;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX-            
KEYWDS   2 TURN-HELIX MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL              
KEYWDS   3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES,               
KEYWDS   4 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI,               
KEYWDS   5 TRANSCRIPTION                                                        
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    S.OHNISHI,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,             
AUTHOR   2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)               
REVDAT   2   24-FEB-09 2DA2    1       VERSN                                    
REVDAT   1   13-JUN-06 2DA2    0                                                
JRNL        AUTH   S.OHNISHI,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,               
JRNL        AUTH 2 S.YOKOYAMA                                                   
JRNL        TITL   SOLUTION STRUCTURE OF THE SECOND HOMEOBOX DOMAIN             
JRNL        TITL 2 OF AT-BINDING TRANSCRIPTION FACTOR 1 (ATBF1)                 
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT, P.                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DA2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB025173.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.1MM PROTEIN U-15N,13C; 20MM      
REMARK 210                                   D-TRIS-HCL(PH7.0); 100MM NACL;     
REMARK 210                                   1MM D-DTT; 0.02% NAN3; 10% D2O     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 3.5, NMRPIPE               
REMARK 210                                   20030801, NMRVIEW 5.0.4,           
REMARK 210                                   KUJIRA 0.932, CYANA 2.0.17         
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINED MOLECULAR DYNAMICS      
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES         
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   9       43.53     34.43                                   
REMARK 500  1 PRO A  67        1.71    -69.79                                   
REMARK 500  2 SER A   6      169.63    -48.38                                   
REMARK 500  2 SER A  65      143.47   -175.01                                   
REMARK 500  2 PRO A  67       93.41    -69.76                                   
REMARK 500  2 SER A  69      109.31    -44.51                                   
REMARK 500  3 SER A   6      172.48    -56.58                                   
REMARK 500  3 SER A  10      116.17   -165.34                                   
REMARK 500  3 ARG A  63      129.58    -34.48                                   
REMARK 500  3 SER A  69      134.32    -35.45                                   
REMARK 500  4 SER A   9       42.48     39.73                                   
REMARK 500  4 THR A  12       87.68    -69.73                                   
REMARK 500  4 PRO A  67       89.81    -69.80                                   
REMARK 500  4 SER A  69      115.24   -162.27                                   
REMARK 500  5 SER A   2       46.24    -80.50                                   
REMARK 500  5 SER A   5       42.27     39.97                                   
REMARK 500  5 LYS A  64      158.98    -39.14                                   
REMARK 500  5 SER A  65       45.22    -79.03                                   
REMARK 500  5 PRO A  67        2.56    -69.70                                   
REMARK 500  6 ARG A  63      126.26    -34.70                                   
REMARK 500  6 SER A  65      -60.83   -103.25                                   
REMARK 500  7 SER A   5      172.49    -46.07                                   
REMARK 500  7 SER A   9      112.47   -171.53                                   
REMARK 500  7 PRO A  67        2.33    -69.78                                   
REMARK 500  7 SER A  69      123.90   -173.35                                   
REMARK 500  8 SER A  10      129.84    -38.82                                   
REMARK 500  8 PRO A  67        2.75    -69.70                                   
REMARK 500  8 SER A  68       92.36    -50.03                                   
REMARK 500  9 SER A   6       42.16    -95.29                                   
REMARK 500  9 SER A   9       44.51     35.36                                   
REMARK 500 10 LYS A  64       90.61    -68.19                                   
REMARK 500 11 SER A   5      -60.78   -133.86                                   
REMARK 500 11 SER A   6       42.17     39.07                                   
REMARK 500 11 SER A  10       42.50     39.30                                   
REMARK 500 11 PRO A  67       87.23    -69.71                                   
REMARK 500 12 SER A   3       42.28    -97.51                                   
REMARK 500 12 ARG A   8       91.19    -56.41                                   
REMARK 500 12 THR A  12       41.76    -81.24                                   
REMARK 500 12 ARG A  63      123.08    -34.52                                   
REMARK 500 13 ARG A  63     -177.55    -57.49                                   
REMARK 500 13 PRO A  67        2.78    -69.76                                   
REMARK 500 13 SER A  68       82.19    -59.63                                   
REMARK 500 14 ARG A  13       52.73     71.62                                   
REMARK 500 14 LYS A  64       93.67    -59.23                                   
REMARK 500 15 SER A   6       82.25    -65.13                                   
REMARK 500 15 ARG A  63      119.38    -36.25                                   
REMARK 500 15 SER A  68       41.23   -108.39                                   
REMARK 500 16 SER A   2      127.06    -35.27                                   
REMARK 500 17 SER A   5       42.22   -105.93                                   
REMARK 500 18 PRO A  67        2.76    -69.81                                   
REMARK 500 19 LYS A  64      133.57    -39.02                                   
REMARK 500 19 SER A  68       95.58    -64.42                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003000131.3   RELATED DB: TARGETDB                    
DBREF  2DA2 A    8    64  UNP    Q15911   ATBF1_HUMAN   2243   2299             
SEQADV 2DA2 GLY A    1  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A    2  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A    3  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 GLY A    4  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A    5  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A    6  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 GLY A    7  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A   65  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 GLY A   66  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 PRO A   67  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A   68  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 SER A   69  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA2 GLY A   70  UNP  Q15911              CLONING ARTIFACT               
SEQRES   1 A   70  GLY SER SER GLY SER SER GLY ARG SER SER ARG THR ARG          
SEQRES   2 A   70  PHE THR ASP TYR GLN LEU ARG VAL LEU GLN ASP PHE PHE          
SEQRES   3 A   70  ASP ALA ASN ALA TYR PRO LYS ASP ASP GLU PHE GLU GLN          
SEQRES   4 A   70  LEU SER ASN LEU LEU ASN LEU PRO THR ARG VAL ILE VAL          
SEQRES   5 A   70  VAL TRP PHE GLN ASN ALA ARG GLN LYS ALA ARG LYS SER          
SEQRES   6 A   70  GLY PRO SER SER GLY                                          
HELIX    1   1 THR A   15  ASN A   29  1                                  15    
HELIX    2   2 LYS A   33  LEU A   44  1                                  12    
HELIX    3   3 PRO A   47  ARG A   63  1                                  17    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000