PDB Short entry for 2DA3
HEADER    TRANSCRIPTION                           13-DEC-05   2DA3              
TITLE     SOLUTION STRUCTURE OF THE THIRD HOMEOBOX DOMAIN OF AT-BINDING         
TITLE    2 TRANSCRIPTION FACTOR 1 (ATBF1)                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ALPHA-FETOPROTEIN ENHANCER BINDING PROTEIN;                
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: THE THIRD HOMEOBOX DOMAIN;                                 
COMPND   5 SYNONYM: AT MOTIF-BINDING FACTOR, AT-BINDING TRANSCRIPTION FACTOR 1, 
COMPND   6 ATBF1;                                                               
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ATBF1;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050322-09;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    HOMEOBOX DOMAIN, THREE HELICES WITH THE DNA BINDING HELIX-TURN-HELIX  
KEYWDS   2 MOTIF, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN      
KEYWDS   3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                 
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    S.OHNISHI,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN      
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2DA3    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2DA3    1       VERSN                                    
REVDAT   1   13-JUN-06 2DA3    0                                                
JRNL        AUTH   S.OHNISHI,T.KIGAWA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA   
JRNL        TITL   SOLUTION STRUCTURE OF THE THIRD HOMEOBOX DOMAIN OF           
JRNL        TITL 2 AT-BINDING TRANSCRIPTION FACTOR 1 (ATBF1)                    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DA3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025174.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.1MM PROTEIN U-15N,13C; 20MM D    
REMARK 210                                   -TRIS-HCL(PH7.0); 100MM NACL;      
REMARK 210                                   1MM D-DTT; 0.02% NAN3; 10% D2O     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20030801, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.932, CYANA 2.0.17         
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   RESTRAINED MOLECULAR DYNAMICS      
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLU A  13      151.79    -44.37                                   
REMARK 500  1 LYS A  18       40.67    -91.87                                   
REMARK 500  1 LYS A  57      114.46    -35.72                                   
REMARK 500  1 LYS A  74      109.35    -46.73                                   
REMARK 500  2 SER A   3      -51.30   -130.45                                   
REMARK 500  2 SER A   5      134.30   -174.82                                   
REMARK 500  2 GLN A  15      107.73    -42.91                                   
REMARK 500  2 THR A  23     -176.04    -69.92                                   
REMARK 500  2 ASP A  39      112.52   -163.05                                   
REMARK 500  3 SER A   5      115.50   -174.53                                   
REMARK 500  3 LEU A  20      -73.37   -124.14                                   
REMARK 500  3 THR A  23      179.72    -57.11                                   
REMARK 500  3 PRO A  42     -177.66    -69.72                                   
REMARK 500  3 LYS A  57      130.03    -36.86                                   
REMARK 500  4 SER A   5       42.15     39.11                                   
REMARK 500  4 THR A  23      178.76    -48.74                                   
REMARK 500  4 LYS A  57      121.75    -37.74                                   
REMARK 500  4 LYS A  74       45.13    -82.88                                   
REMARK 500  4 SER A  79      109.72    -35.41                                   
REMARK 500  5 PRO A  14        4.27    -69.82                                   
REMARK 500  5 PRO A  77        0.02    -69.76                                   
REMARK 500  6 ASP A  17      160.14    -49.38                                   
REMARK 500  6 LYS A  18      -57.30   -133.65                                   
REMARK 500  6 LYS A  57      124.31    -38.24                                   
REMARK 500  6 LYS A  74      101.00    -56.14                                   
REMARK 500  6 PRO A  77       99.30    -69.78                                   
REMARK 500  7 ARG A  16       41.35     39.24                                   
REMARK 500  7 ASP A  17      114.10    -36.20                                   
REMARK 500  7 LYS A  18       40.15    -91.75                                   
REMARK 500  8 LEU A  20       54.55     33.97                                   
REMARK 500  8 ARG A  21      166.23    -49.14                                   
REMARK 500  8 THR A  23      178.74    -48.42                                   
REMARK 500  9 THR A  23      175.50    -47.40                                   
REMARK 500  9 PRO A  42     -172.94    -69.77                                   
REMARK 500  9 PRO A  77       92.80    -69.78                                   
REMARK 500  9 SER A  78       34.41     70.98                                   
REMARK 500 10 SER A   5      118.24   -170.23                                   
REMARK 500 10 THR A  23      175.08    -54.65                                   
REMARK 500 10 LEU A  47      -31.85    -39.97                                   
REMARK 500 10 LYS A  57      111.84    -34.75                                   
REMARK 500 12 THR A   9      128.52   -170.06                                   
REMARK 500 12 ARG A  16       98.18    -63.99                                   
REMARK 500 12 LYS A  18      -61.90   -124.41                                   
REMARK 500 12 ARG A  21      153.83    -44.05                                   
REMARK 500 12 THR A  23      176.74    -53.76                                   
REMARK 500 12 LYS A  57      125.23    -37.78                                   
REMARK 500 12 LYS A  74      156.55    -42.66                                   
REMARK 500 12 PRO A  77        1.98    -69.75                                   
REMARK 500 13 PRO A  14        4.28    -69.77                                   
REMARK 500 13 GLN A  15       97.61    -69.63                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      85 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003000131.1   RELATED DB: TARGETDB                    
DBREF  2DA3 A    8    74  UNP    Q15911   ATBF1_HUMAN   2632   2698             
SEQADV 2DA3 GLY A    1  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A    2  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A    3  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 GLY A    4  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A    5  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A    6  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 GLY A    7  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A   75  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 GLY A   76  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 PRO A   77  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A   78  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 SER A   79  UNP  Q15911              CLONING ARTIFACT               
SEQADV 2DA3 GLY A   80  UNP  Q15911              CLONING ARTIFACT               
SEQRES   1 A   80  GLY SER SER GLY SER SER GLY GLY THR GLY GLY GLU GLU          
SEQRES   2 A   80  PRO GLN ARG ASP LYS ARG LEU ARG THR THR ILE THR PRO          
SEQRES   3 A   80  GLU GLN LEU GLU ILE LEU TYR GLN LYS TYR LEU LEU ASP          
SEQRES   4 A   80  SER ASN PRO THR ARG LYS MET LEU ASP HIS ILE ALA HIS          
SEQRES   5 A   80  GLU VAL GLY LEU LYS LYS ARG VAL VAL GLN VAL TRP PHE          
SEQRES   6 A   80  GLN ASN THR ARG ALA ARG GLU ARG LYS SER GLY PRO SER          
SEQRES   7 A   80  SER GLY                                                      
HELIX    1   1 GLN A   28  ASP A   39  1                                  12    
HELIX    2   2 THR A   43  GLY A   55  1                                  13    
HELIX    3   3 LYS A   57  LYS A   74  1                                  18    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000