PDB Short entry for 2DAS HEADER METAL TRANSPORT 14-DEC-05 2DAS TITLE SOLUTION STRUCTURE OF TRASH DOMAIN OF ZINC FINGER MYM-TYPE TITLE 2 PROTEIN 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER MYM-TYPE PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRASH DOMAIN; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 237, ZINC FINGER PROTEIN 198- COMPND 6 LIKE 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZMYM5; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050322-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRASH DOMAIN, ZINC FINGER MYM-TYPE PROTEIN 5, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2DAS 1 VERSN REVDAT 1 14-JUN-06 2DAS 0 JRNL AUTH T.N.NIRAULA,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF TRASH DOMAIN OF ZINC FINGER JRNL TITL 2 MYM-TYPE PROTEIN 5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DAS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-05. REMARK 100 THE RCSB ID CODE IS RCSB025194. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.41MM TRASH DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 0.05MM ZNCL2; 1MM IDA REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 -62.07 -102.75 REMARK 500 1 ALA A 11 111.33 -173.81 REMARK 500 1 ASN A 25 -59.90 -128.09 REMARK 500 1 PRO A 29 94.82 -69.74 REMARK 500 1 THR A 50 -39.59 -34.03 REMARK 500 1 SER A 56 110.16 -38.84 REMARK 500 1 PRO A 59 80.30 -69.77 REMARK 500 2 PRO A 9 87.21 -69.78 REMARK 500 2 ALA A 11 113.81 -168.56 REMARK 500 2 PRO A 18 4.56 -69.74 REMARK 500 2 LYS A 20 150.58 -45.91 REMARK 500 2 ASN A 25 -59.80 -131.09 REMARK 500 2 PRO A 29 97.01 -69.80 REMARK 500 2 GLN A 34 173.54 -53.01 REMARK 500 2 SER A 42 138.77 -173.63 REMARK 500 2 HIS A 44 122.27 -35.47 REMARK 500 3 GLN A 12 -51.86 -128.45 REMARK 500 3 GLN A 13 144.31 -172.90 REMARK 500 3 GLN A 14 128.73 -170.27 REMARK 500 3 LEU A 15 -54.82 -125.63 REMARK 500 3 PRO A 18 86.33 -69.74 REMARK 500 3 ASN A 25 -61.82 -129.19 REMARK 500 3 PRO A 29 99.60 -69.74 REMARK 500 3 SER A 56 163.42 -41.54 REMARK 500 3 PRO A 59 84.61 -69.68 REMARK 500 4 PRO A 9 3.28 -69.70 REMARK 500 4 ALA A 11 125.93 -172.95 REMARK 500 4 GLN A 12 147.12 -172.64 REMARK 500 4 ASN A 25 -62.07 -125.66 REMARK 500 4 PRO A 29 98.13 -69.83 REMARK 500 4 SER A 57 -43.12 -131.42 REMARK 500 4 PRO A 59 98.55 -69.73 REMARK 500 5 THR A 16 41.06 -101.89 REMARK 500 5 ASN A 25 -60.07 -129.49 REMARK 500 5 PRO A 29 94.96 -69.78 REMARK 500 5 PRO A 59 85.14 -69.75 REMARK 500 6 GLN A 12 159.20 -43.72 REMARK 500 6 ASN A 25 -60.26 -133.24 REMARK 500 6 PRO A 29 95.38 -69.73 REMARK 500 6 LYS A 32 106.33 -56.20 REMARK 500 7 GLN A 14 110.88 -164.52 REMARK 500 7 ASN A 25 -59.61 -134.48 REMARK 500 7 PRO A 29 96.82 -69.81 REMARK 500 7 LYS A 32 40.21 -81.35 REMARK 500 7 GLN A 34 171.02 -52.67 REMARK 500 7 ARG A 39 -71.12 -78.69 REMARK 500 7 LYS A 40 110.03 -171.13 REMARK 500 7 SER A 42 116.27 -33.47 REMARK 500 7 ALA A 43 43.09 -80.04 REMARK 500 8 ASN A 25 -60.50 -130.56 REMARK 500 8 GLN A 34 165.65 -43.59 REMARK 500 8 LEU A 52 -39.89 -39.74 REMARK 500 9 SER A 5 141.21 -172.26 REMARK 500 9 ASN A 25 -59.25 -132.03 REMARK 500 9 ALA A 43 41.72 -101.12 REMARK 500 10 PRO A 9 -176.98 -69.70 REMARK 500 10 GLN A 12 133.69 -173.75 REMARK 500 10 ASN A 25 -61.74 -131.07 REMARK 500 10 PRO A 29 96.84 -69.75 REMARK 500 10 THR A 50 -37.01 -37.27 REMARK 500 10 SER A 57 47.30 36.33 REMARK 500 10 SER A 60 126.50 -37.66 REMARK 500 11 PRO A 9 -174.41 -69.78 REMARK 500 11 THR A 16 98.41 -49.56 REMARK 500 11 LYS A 20 170.32 -45.47 REMARK 500 11 ASN A 25 -62.42 -134.01 REMARK 500 11 PRO A 29 99.12 -69.77 REMARK 500 11 THR A 35 158.78 -40.85 REMARK 500 11 SER A 42 -45.23 -130.43 REMARK 500 12 SER A 2 142.72 -171.46 REMARK 500 12 SER A 5 120.93 -171.57 REMARK 500 12 PRO A 9 -173.83 -69.73 REMARK 500 12 THR A 16 120.04 -34.10 REMARK 500 12 ASN A 25 -59.83 -133.81 REMARK 500 12 PRO A 29 96.92 -69.80 REMARK 500 12 GLN A 31 164.41 -49.51 REMARK 500 12 SER A 57 116.80 -168.59 REMARK 500 12 SER A 61 42.07 36.43 REMARK 500 13 SER A 6 156.85 -39.30 REMARK 500 13 GLN A 14 124.56 -170.47 REMARK 500 13 ALA A 19 45.32 -109.19 REMARK 500 13 ASN A 25 -66.41 -130.87 REMARK 500 13 GLN A 34 -72.50 -34.12 REMARK 500 13 ALA A 36 135.24 -173.34 REMARK 500 14 ALA A 11 41.72 70.23 REMARK 500 14 GLN A 12 90.52 -69.87 REMARK 500 14 ALA A 19 40.80 -93.35 REMARK 500 14 LYS A 20 162.48 -49.69 REMARK 500 14 ASN A 25 -61.13 -129.74 REMARK 500 14 PRO A 29 96.91 -69.73 REMARK 500 14 LYS A 40 138.39 -34.31 REMARK 500 14 ALA A 43 41.18 -109.17 REMARK 500 14 LEU A 52 -39.53 -39.26 REMARK 500 15 SER A 3 -55.04 -120.41 REMARK 500 15 SER A 6 -62.04 -109.95 REMARK 500 15 PRO A 18 -163.84 -69.72 REMARK 500 15 ASN A 25 -61.31 -126.31 REMARK 500 15 PRO A 29 97.72 -69.78 REMARK 500 15 LYS A 40 151.18 -47.49 REMARK 500 15 ALA A 43 42.17 -108.32 REMARK 500 15 PRO A 59 95.71 -69.80 REMARK 500 16 GLN A 8 75.10 -109.30 REMARK 500 16 ASN A 25 -61.02 -124.95 REMARK 500 16 PRO A 29 99.45 -69.80 REMARK 500 16 ALA A 43 43.40 -101.74 REMARK 500 17 SER A 2 118.28 -171.19 REMARK 500 17 PRO A 9 8.27 -69.72 REMARK 500 17 THR A 10 151.02 -33.54 REMARK 500 17 ALA A 11 -61.18 -129.82 REMARK 500 17 LEU A 15 165.41 -47.45 REMARK 500 17 CYS A 23 138.51 -38.66 REMARK 500 17 ASN A 25 -59.71 -129.60 REMARK 500 17 LYS A 32 95.23 -56.42 REMARK 500 17 ALA A 43 44.57 -78.89 REMARK 500 18 SER A 2 111.25 -166.83 REMARK 500 18 LYS A 17 150.70 -34.82 REMARK 500 18 ASN A 25 -61.51 -127.38 REMARK 500 18 PRO A 29 95.18 -69.76 REMARK 500 18 LYS A 40 112.15 -34.06 REMARK 500 18 PRO A 59 84.76 -69.77 REMARK 500 18 SER A 60 125.54 -175.05 REMARK 500 19 ALA A 19 40.56 74.46 REMARK 500 19 ASN A 25 -60.10 -124.02 REMARK 500 19 PRO A 29 94.78 -69.76 REMARK 500 19 LYS A 32 130.82 -33.96 REMARK 500 19 GLN A 34 172.26 -48.23 REMARK 500 19 ALA A 43 44.53 -100.47 REMARK 500 19 THR A 50 -38.75 -33.66 REMARK 500 19 SER A 57 99.06 -60.23 REMARK 500 20 ALA A 11 137.51 -34.31 REMARK 500 20 PRO A 18 82.51 -69.68 REMARK 500 20 ASN A 25 -59.49 -128.52 REMARK 500 20 SER A 57 47.92 -79.52 REMARK 500 20 PRO A 59 0.33 -69.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 26 SG 97.7 REMARK 620 3 CYS A 47 SG 116.2 108.5 REMARK 620 4 CYS A 51 SG 109.4 117.7 107.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSG002000185.1 RELATED DB: TARGETDB DBREF 2DAS A 8 56 UNP Q9UJ78 ZMYM5_HUMAN 229 277 SEQADV 2DAS GLY A 1 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 2 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 3 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS GLY A 4 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 5 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 6 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS GLY A 7 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 57 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS GLY A 58 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS PRO A 59 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 60 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS SER A 61 UNP Q9UJ78 CLONING ARTIFACT SEQADV 2DAS GLY A 62 UNP Q9UJ78 CLONING ARTIFACT SEQRES 1 A 62 GLY SER SER GLY SER SER GLY GLN PRO THR ALA GLN GLN SEQRES 2 A 62 GLN LEU THR LYS PRO ALA LYS ILE THR CYS ALA ASN CYS SEQRES 3 A 62 LYS LYS PRO LEU GLN LYS GLY GLN THR ALA TYR GLN ARG SEQRES 4 A 62 LYS GLY SER ALA HIS LEU PHE CYS SER THR THR CYS LEU SEQRES 5 A 62 SER SER PHE SER SER GLY PRO SER SER GLY HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 48 SER A 56 1 9 SHEET 1 A 2 TYR A 37 GLN A 38 0 SHEET 2 A 2 LEU A 45 PHE A 46 -1 O PHE A 46 N TYR A 37 LINK ZN ZN A 101 SG CYS A 23 1555 1555 2.37 LINK ZN ZN A 101 SG CYS A 26 1555 1555 2.34 LINK ZN ZN A 101 SG CYS A 47 1555 1555 2.33 LINK ZN ZN A 101 SG CYS A 51 1555 1555 2.33 SITE 1 AC1 4 CYS A 23 CYS A 26 CYS A 47 CYS A 51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000