PDB Short entry for 2DCE HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-JAN-06 2DCE TITLE SOLUTION STRUCTURE OF THE SWIRM DOMAIN OF HUMAN KIAA1915 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1915 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SWIRM DOMAIN, RESIDUES 8-111; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1915; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P041018-14; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SWIRM DOMAIN, KIAA1915, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE,A.TANAKA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 09-MAR-22 2DCE 1 REMARK SEQADV REVDAT 4 24-FEB-09 2DCE 1 VERSN REVDAT 3 15-MAY-07 2DCE 3 ATOM REVDAT 2 15-MAY-07 2DCE 1 JRNL REVDAT 1 06-JUL-06 2DCE 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,T.UMEHARA,S.KOSHIBA,M.INOUE,T.YABUKI, JRNL AUTH 2 M.AOKI,E.SEKI,T.MATSUDA,S.WATANABE,Y.TOMO,Y.NISHIMURA, JRNL AUTH 3 T.HARADA,T.TERADA,M.SHIROUZU,Y.HAYASHIZAKI,O.OHARA,A.TANAKA, JRNL AUTH 4 T.KIGAWA,S.YOKOYAMA JRNL TITL STRUCTURAL AND FUNCTIONAL DIFFERENCES OF SWIRM DOMAIN JRNL TITL 2 SUBTYPES JRNL REF J.MOL.BIOL. V. 369 222 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17428495 JRNL DOI 10.1016/J.JMB.2007.03.027 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DCE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1000025248. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 320MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM SWIRM DOMAIN U-15N,13C; REMARK 210 20MM D-TRIS HCL; 300MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 12 29.04 37.57 REMARK 500 1 LYS A 65 154.68 -40.55 REMARK 500 1 ALA A 99 -33.73 -34.00 REMARK 500 1 GLN A 106 42.80 -96.84 REMARK 500 2 SER A 6 97.78 -55.83 REMARK 500 2 HIS A 8 124.52 -37.52 REMARK 500 2 GLU A 40 -72.84 -59.70 REMARK 500 2 LYS A 65 155.05 -38.41 REMARK 500 2 LYS A 79 -66.76 -104.36 REMARK 500 2 ALA A 99 -34.62 -33.81 REMARK 500 2 GLU A 105 -35.04 -34.41 REMARK 500 2 GLN A 106 39.45 -83.09 REMARK 500 3 GLU A 9 128.54 -171.45 REMARK 500 3 GLU A 12 48.15 35.01 REMARK 500 3 LYS A 65 154.83 -36.40 REMARK 500 3 ASN A 80 46.00 -79.81 REMARK 500 3 GLN A 106 36.54 -95.47 REMARK 500 4 GLU A 11 73.03 -110.88 REMARK 500 4 LYS A 65 154.56 -43.51 REMARK 500 4 LEU A 78 45.31 71.74 REMARK 500 4 CYS A 81 -75.07 -63.16 REMARK 500 4 ALA A 99 -37.07 -34.09 REMARK 500 5 HIS A 8 42.88 -87.39 REMARK 500 5 GLU A 10 155.98 -43.14 REMARK 500 5 GLU A 30 -36.43 -38.05 REMARK 500 5 ARG A 42 155.44 -37.04 REMARK 500 5 ARG A 54 -70.02 -51.64 REMARK 500 5 LYS A 65 154.47 -39.38 REMARK 500 5 PRO A 76 1.33 -69.76 REMARK 500 5 LYS A 79 -74.58 -98.12 REMARK 500 5 CYS A 81 50.42 -106.25 REMARK 500 5 VAL A 84 -36.89 -35.83 REMARK 500 5 ALA A 107 164.54 -45.08 REMARK 500 6 SER A 2 44.56 38.99 REMARK 500 6 HIS A 8 39.13 -89.95 REMARK 500 6 GLU A 29 -32.60 -34.73 REMARK 500 6 ARG A 42 -178.97 -66.23 REMARK 500 6 GLN A 43 -70.39 -95.22 REMARK 500 6 LYS A 65 154.31 -44.04 REMARK 500 6 LEU A 78 69.23 -106.90 REMARK 500 6 ASN A 80 -72.53 -40.83 REMARK 500 6 ALA A 99 -33.65 -35.01 REMARK 500 7 ARG A 54 -70.69 -51.88 REMARK 500 7 LYS A 65 154.86 -35.99 REMARK 500 7 LYS A 79 -66.04 -99.80 REMARK 500 7 ALA A 99 -36.73 -33.77 REMARK 500 7 GLN A 106 44.07 -98.06 REMARK 500 8 SER A 2 140.90 -170.48 REMARK 500 8 GLU A 10 157.24 -48.12 REMARK 500 8 GLU A 11 53.31 -90.37 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101882.2 RELATED DB: TARGETDB DBREF 2DCE A 8 111 UNP Q5VVJ2 MYSM1_HUMAN 367 470 SEQADV 2DCE GLY A 1 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 2 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 3 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE GLY A 4 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 5 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE SER A 6 UNP Q5VVJ2 CLONING ARTIFACT SEQADV 2DCE GLY A 7 UNP Q5VVJ2 CLONING ARTIFACT SEQRES 1 A 111 GLY SER SER GLY SER SER GLY HIS GLU GLU GLU GLU LEU SEQRES 2 A 111 LYS PRO PRO GLU GLN GLU ILE GLU ILE ASP ARG ASN ILE SEQRES 3 A 111 ILE GLN GLU GLU GLU LYS GLN ALA ILE PRO GLU PHE PHE SEQRES 4 A 111 GLU GLY ARG GLN ALA LYS THR PRO GLU ARG TYR LEU LYS SEQRES 5 A 111 ILE ARG ASN TYR ILE LEU ASP GLN TRP GLU ILE CYS LYS SEQRES 6 A 111 PRO LYS TYR LEU ASN LYS THR SER VAL ARG PRO GLY LEU SEQRES 7 A 111 LYS ASN CYS GLY ASP VAL ASN CYS ILE GLY ARG ILE HIS SEQRES 8 A 111 THR TYR LEU GLU LEU ILE GLY ALA ILE ASN PHE GLY CYS SEQRES 9 A 111 GLU GLN ALA VAL TYR ASN ARG HELIX 1 1 GLN A 28 GLN A 33 1 6 HELIX 2 2 ILE A 35 GLU A 40 5 6 HELIX 3 3 THR A 46 LYS A 65 1 20 HELIX 4 4 ASN A 70 VAL A 74 5 5 HELIX 5 5 ASP A 83 GLY A 98 1 16 CISPEP 1 LYS A 65 PRO A 66 1 -0.06 CISPEP 2 LYS A 65 PRO A 66 2 -0.04 CISPEP 3 LYS A 65 PRO A 66 3 -0.12 CISPEP 4 LYS A 65 PRO A 66 4 -0.18 CISPEP 5 LYS A 65 PRO A 66 5 -0.07 CISPEP 6 LYS A 65 PRO A 66 6 -0.04 CISPEP 7 LYS A 65 PRO A 66 7 -0.11 CISPEP 8 LYS A 65 PRO A 66 8 -0.07 CISPEP 9 LYS A 65 PRO A 66 9 -0.18 CISPEP 10 LYS A 65 PRO A 66 10 -0.10 CISPEP 11 LYS A 65 PRO A 66 11 -0.06 CISPEP 12 LYS A 65 PRO A 66 12 -0.10 CISPEP 13 LYS A 65 PRO A 66 13 -0.12 CISPEP 14 LYS A 65 PRO A 66 14 -0.11 CISPEP 15 LYS A 65 PRO A 66 15 -0.14 CISPEP 16 LYS A 65 PRO A 66 16 -0.06 CISPEP 17 LYS A 65 PRO A 66 17 -0.10 CISPEP 18 LYS A 65 PRO A 66 18 -0.09 CISPEP 19 LYS A 65 PRO A 66 19 -0.13 CISPEP 20 LYS A 65 PRO A 66 20 -0.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000