PDB Short entry for 2DDF HEADER HYDROLASE 28-JAN-06 2DDF TITLE CRYSTAL STRUCTURE OF TACE IN COMPLEX WITH TAPI-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADAM 17; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: A DISINTEGRIN AND METALLOPROTEINASE DOMAIN 17, TNF-ALPHA- COMPND 5 CONVERTING ENZYME, TNF-ALPHA CONVERTASE, SNAKE VENOM-LIKE PROTEASE, COMPND 6 CD156B ANTIGEN; COMPND 7 EC: 3.4.24.86; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAM17, CSVP, TACE; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS TACE ADAM17 ZN-ENDOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.ORTH REVDAT 6 23-AUG-23 2DDF 1 REMARK REVDAT 5 20-OCT-21 2DDF 1 REMARK SEQADV LINK REVDAT 4 05-OCT-11 2DDF 1 LINK REVDAT 3 13-JUL-11 2DDF 1 VERSN REVDAT 2 24-FEB-09 2DDF 1 VERSN REVDAT 1 14-MAR-06 2DDF 0 JRNL AUTH R.N.INGRAM,P.ORTH,C.L.STRICKLAND,H.V.LE,V.MADISON,B.M.BEYER JRNL TITL STABILIZATION OF THE AUTOPROTEOLYSIS OF TNF-ALPHA CONVERTING JRNL TITL 2 ENZYME (TACE) RESULTS IN A NOVEL CRYSTAL FORM SUITABLE FOR JRNL TITL 3 STRUCTURE-BASED DRUG DESIGN STUDIES. JRNL REF PROTEIN ENG.DES.SEL. V. 19 155 2006 JRNL REFN ISSN 1741-0126 JRNL PMID 16459338 JRNL DOI 10.1093/PROTEIN/GZJ014 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 63552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4409 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3892 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4077 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5522 ; 1.340 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 6.070 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;34.002 ;25.081 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;11.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 589 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3144 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1936 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2838 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 310 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.095 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2587 ; 1.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3995 ; 1.616 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1711 ; 2.418 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 3.430 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000025284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1BKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6K, 10% 2-PROPANOL, 100 MM REMARK 280 SODIUM CITRATE BUFFER , PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.19700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.85650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.81950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.85650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.19700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.81950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 357 REMARK 465 ALA A 358 REMARK 465 ASN A 359 REMARK 465 SER A 360 REMARK 465 PRO B 218 REMARK 465 ASP B 219 REMARK 465 SER B 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 HIS A 361 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 427 CG CD OE1 OE2 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 LYS A 460 CG CD CE NZ REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 SER A 464 OG REMARK 470 PRO B 220 CB CG CD REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 241 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 283 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LYS B 302 CG CD CE NZ REMARK 470 ASN B 306 CG OD1 ND2 REMARK 470 GLU B 307 CG CD OE1 OE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 GLU B 328 CG CD OE1 OE2 REMARK 470 LYS B 331 CG CD CE NZ REMARK 470 LYS B 367 CG CD CE NZ REMARK 470 LYS B 392 CG CD CE NZ REMARK 470 GLU B 427 CG CD OE1 OE2 REMARK 470 GLU B 445 CG CD OE1 OE2 REMARK 470 LYS B 460 CG CD CE NZ REMARK 470 GLU B 463 CG CD OE1 OE2 REMARK 470 GLN B 467 CG CD OE1 NE2 REMARK 470 GLU B 472 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 533 O HOH B 601 2.17 REMARK 500 OE2 GLU A 290 O HOH A 614 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 222 57.19 -141.03 REMARK 500 ASN A 269 37.80 73.57 REMARK 500 ALA A 270 -118.87 -150.30 REMARK 500 CYS A 365 125.77 73.83 REMARK 500 ASN A 381 57.94 -96.13 REMARK 500 ALA B 270 -110.90 -133.25 REMARK 500 SER B 360 -154.94 -99.60 REMARK 500 CYS B 365 119.15 84.57 REMARK 500 CYS B 469 -4.01 -144.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 461 ILE A 462 -148.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 INN A 3 O REMARK 620 2 INN A 3 O4 80.4 REMARK 620 3 HIS A 405 NE2 97.6 93.3 REMARK 620 4 HIS A 409 NE2 163.4 90.1 96.5 REMARK 620 5 HIS A 415 NE2 88.3 161.6 102.6 97.2 REMARK 620 6 HOH A 661 O 79.7 81.1 174.1 85.5 82.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 475 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 342 OD1 REMARK 620 2 PHE A 343 O 109.1 REMARK 620 3 PHE A 343 N 84.0 57.2 REMARK 620 4 ASN A 389 OD1 101.3 145.2 144.9 REMARK 620 5 HOH A 659 O 97.4 104.8 57.8 87.1 REMARK 620 6 HOH A 660 O 86.9 83.7 133.5 81.6 168.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 INN B 2 O REMARK 620 2 INN B 2 O4 79.9 REMARK 620 3 HIS B 405 NE2 99.4 97.3 REMARK 620 4 HIS B 409 NE2 162.1 89.8 96.3 REMARK 620 5 HIS B 415 NE2 90.7 160.6 101.0 94.6 REMARK 620 6 HOH B 642 O 82.8 74.1 170.6 80.3 88.1 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE ENZYME INHIBITOR REMARK 630 MOLECULE NAME: N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOETHYL]-4- REMARK 630 METHYLPENTANOYL}-3-METHYL-L-VALYL-N-(2-AMINOETHYL)-L-ALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 INN A 3 REMARK 630 INN B 2 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 2HM TBG ALA EDN REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE INN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE INN A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 476 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BKC RELATED DB: PDB DBREF 2DDF A 218 474 UNP P78536 ADA17_HUMAN 218 474 DBREF 2DDF B 218 474 UNP P78536 ADA17_HUMAN 218 474 SEQADV 2DDF ALA A 266 UNP P78536 SER 266 ENGINEERED MUTATION SEQADV 2DDF GLY A 353 UNP P78536 VAL 353 ENGINEERED MUTATION SEQADV 2DDF GLN A 452 UNP P78536 ASN 452 ENGINEERED MUTATION SEQADV 2DDF ALA B 266 UNP P78536 SER 266 ENGINEERED MUTATION SEQADV 2DDF GLY B 353 UNP P78536 VAL 353 ENGINEERED MUTATION SEQADV 2DDF GLN B 452 UNP P78536 ASN 452 ENGINEERED MUTATION SEQRES 1 A 257 PRO ASP PRO MET LYS ASN THR CYS LYS LEU LEU VAL VAL SEQRES 2 A 257 ALA ASP HIS ARG PHE TYR ARG TYR MET GLY ARG GLY GLU SEQRES 3 A 257 GLU SER THR THR THR ASN TYR LEU ILE GLU LEU ILE ASP SEQRES 4 A 257 ARG VAL ASP ASP ILE TYR ARG ASN THR ALA TRP ASP ASN SEQRES 5 A 257 ALA GLY PHE LYS GLY TYR GLY ILE GLN ILE GLU GLN ILE SEQRES 6 A 257 ARG ILE LEU LYS SER PRO GLN GLU VAL LYS PRO GLY GLU SEQRES 7 A 257 LYS HIS TYR ASN MET ALA LYS SER TYR PRO ASN GLU GLU SEQRES 8 A 257 LYS ASP ALA TRP ASP VAL LYS MET LEU LEU GLU GLN PHE SEQRES 9 A 257 SER PHE ASP ILE ALA GLU GLU ALA SER LYS VAL CYS LEU SEQRES 10 A 257 ALA HIS LEU PHE THR TYR GLN ASP PHE ASP MET GLY THR SEQRES 11 A 257 LEU GLY LEU ALA TYR GLY GLY SER PRO ARG ALA ASN SER SEQRES 12 A 257 HIS GLY GLY VAL CYS PRO LYS ALA TYR TYR SER PRO VAL SEQRES 13 A 257 GLY LYS LYS ASN ILE TYR LEU ASN SER GLY LEU THR SER SEQRES 14 A 257 THR LYS ASN TYR GLY LYS THR ILE LEU THR LYS GLU ALA SEQRES 15 A 257 ASP LEU VAL THR THR HIS GLU LEU GLY HIS ASN PHE GLY SEQRES 16 A 257 ALA GLU HIS ASP PRO ASP GLY LEU ALA GLU CYS ALA PRO SEQRES 17 A 257 ASN GLU ASP GLN GLY GLY LYS TYR VAL MET TYR PRO ILE SEQRES 18 A 257 ALA VAL SER GLY ASP HIS GLU ASN ASN LYS MET PHE SER SEQRES 19 A 257 GLN CYS SER LYS GLN SER ILE TYR LYS THR ILE GLU SER SEQRES 20 A 257 LYS ALA GLN GLU CYS PHE GLN GLU ARG SER SEQRES 1 B 257 PRO ASP PRO MET LYS ASN THR CYS LYS LEU LEU VAL VAL SEQRES 2 B 257 ALA ASP HIS ARG PHE TYR ARG TYR MET GLY ARG GLY GLU SEQRES 3 B 257 GLU SER THR THR THR ASN TYR LEU ILE GLU LEU ILE ASP SEQRES 4 B 257 ARG VAL ASP ASP ILE TYR ARG ASN THR ALA TRP ASP ASN SEQRES 5 B 257 ALA GLY PHE LYS GLY TYR GLY ILE GLN ILE GLU GLN ILE SEQRES 6 B 257 ARG ILE LEU LYS SER PRO GLN GLU VAL LYS PRO GLY GLU SEQRES 7 B 257 LYS HIS TYR ASN MET ALA LYS SER TYR PRO ASN GLU GLU SEQRES 8 B 257 LYS ASP ALA TRP ASP VAL LYS MET LEU LEU GLU GLN PHE SEQRES 9 B 257 SER PHE ASP ILE ALA GLU GLU ALA SER LYS VAL CYS LEU SEQRES 10 B 257 ALA HIS LEU PHE THR TYR GLN ASP PHE ASP MET GLY THR SEQRES 11 B 257 LEU GLY LEU ALA TYR GLY GLY SER PRO ARG ALA ASN SER SEQRES 12 B 257 HIS GLY GLY VAL CYS PRO LYS ALA TYR TYR SER PRO VAL SEQRES 13 B 257 GLY LYS LYS ASN ILE TYR LEU ASN SER GLY LEU THR SER SEQRES 14 B 257 THR LYS ASN TYR GLY LYS THR ILE LEU THR LYS GLU ALA SEQRES 15 B 257 ASP LEU VAL THR THR HIS GLU LEU GLY HIS ASN PHE GLY SEQRES 16 B 257 ALA GLU HIS ASP PRO ASP GLY LEU ALA GLU CYS ALA PRO SEQRES 17 B 257 ASN GLU ASP GLN GLY GLY LYS TYR VAL MET TYR PRO ILE SEQRES 18 B 257 ALA VAL SER GLY ASP HIS GLU ASN ASN LYS MET PHE SER SEQRES 19 B 257 GLN CYS SER LYS GLN SER ILE TYR LYS THR ILE GLU SER SEQRES 20 B 257 LYS ALA GLN GLU CYS PHE GLN GLU ARG SER HET ZN A 1 1 HET CA A 475 1 HET INN A 3 29 HET IPA A 476 4 HET ZN B 4 1 HET INN B 2 29 HET IMD B 475 5 HET CIT B 500 13 HET IPA B 501 4 HET IPA B 502 4 HET IPA B 503 4 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM INN N-{(2R)-2-[2-(HYDROXYAMINO)-2-OXOETHYL]-4- HETNAM 2 INN METHYLPENTANOYL}-3-METHYL-L-VALYL-N-(2-AMINOETHYL)-L- HETNAM 3 INN ALANINAMIDE HETNAM IPA ISOPROPYL ALCOHOL HETNAM IMD IMIDAZOLE HETNAM CIT CITRIC ACID HETSYN IPA 2-PROPANOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 INN 2(C19 H37 N5 O5) FORMUL 6 IPA 4(C3 H8 O) FORMUL 9 IMD C3 H5 N2 1+ FORMUL 10 CIT C6 H8 O7 FORMUL 14 HOH *333(H2 O) HELIX 1 1 ASP A 232 MET A 239 1 8 HELIX 2 2 GLU A 243 ASN A 264 1 22 HELIX 3 3 ASP A 313 ILE A 325 1 13 HELIX 4 4 ILE A 325 SER A 330 1 6 HELIX 5 5 PHE A 343 THR A 347 5 5 HELIX 6 6 LEU A 395 PHE A 411 1 17 HELIX 7 7 ASN A 426 GLY A 430 5 5 HELIX 8 8 SER A 451 PHE A 470 1 20 HELIX 9 9 ASP B 232 MET B 239 1 8 HELIX 10 10 GLU B 243 ASN B 264 1 22 HELIX 11 11 ASP B 313 ILE B 325 1 13 HELIX 12 12 ILE B 325 SER B 330 1 6 HELIX 13 13 PHE B 343 THR B 347 5 5 HELIX 14 14 LEU B 395 PHE B 411 1 17 HELIX 15 15 ASN B 426 GLY B 430 5 5 HELIX 16 16 HIS B 444 MET B 449 5 6 HELIX 17 17 SER B 451 PHE B 470 1 20 SHEET 1 A 5 GLY A 276 ILE A 284 0 SHEET 2 A 5 THR A 224 ALA A 231 1 N LEU A 227 O GLU A 280 SHEET 3 A 5 LEU A 334 THR A 339 1 O PHE A 338 N VAL A 230 SHEET 4 A 5 SER A 382 SER A 386 1 O THR A 385 N THR A 339 SHEET 5 A 5 GLY A 349 ALA A 351 -1 N LEU A 350 O LEU A 384 SHEET 1 B 2 ALA A 368 SER A 371 0 SHEET 2 B 2 LYS A 376 TYR A 379 -1 O ILE A 378 N TYR A 369 SHEET 1 C 2 LYS A 388 ASN A 389 0 SHEET 2 C 2 LYS A 392 THR A 393 -1 O LYS A 392 N ASN A 389 SHEET 1 D 5 GLY B 276 ILE B 284 0 SHEET 2 D 5 THR B 224 ALA B 231 1 N LEU B 227 O GLU B 280 SHEET 3 D 5 LEU B 334 THR B 339 1 O PHE B 338 N VAL B 230 SHEET 4 D 5 SER B 382 SER B 386 1 O THR B 385 N LEU B 337 SHEET 5 D 5 GLY B 349 ALA B 351 -1 N LEU B 350 O LEU B 384 SHEET 1 E 2 ALA B 368 SER B 371 0 SHEET 2 E 2 LYS B 376 TYR B 379 -1 O ILE B 378 N TYR B 369 SHEET 1 F 2 LYS B 388 ASN B 389 0 SHEET 2 F 2 LYS B 392 THR B 393 -1 O LYS B 392 N ASN B 389 SSBOND 1 CYS A 225 CYS A 333 1555 1555 2.08 SSBOND 2 CYS A 365 CYS A 469 1555 1555 2.01 SSBOND 3 CYS A 423 CYS A 453 1555 1555 2.03 SSBOND 4 CYS B 225 CYS B 333 1555 1555 2.08 SSBOND 5 CYS B 365 CYS B 469 1555 1555 2.03 SSBOND 6 CYS B 423 CYS B 453 1555 1555 2.06 LINK ZN ZN A 1 O INN A 3 1555 1555 2.06 LINK ZN ZN A 1 O4 INN A 3 1555 1555 2.18 LINK ZN ZN A 1 NE2 HIS A 405 1555 1555 2.07 LINK ZN ZN A 1 NE2 HIS A 409 1555 1555 2.09 LINK ZN ZN A 1 NE2 HIS A 415 1555 1555 2.05 LINK ZN ZN A 1 O HOH A 661 1555 1555 2.48 LINK OD1 ASP A 342 CA CA A 475 1555 1555 2.28 LINK O PHE A 343 CA CA A 475 1555 1555 2.31 LINK N PHE A 343 CA CA A 475 1555 1555 3.29 LINK OD1 ASN A 389 CA CA A 475 1555 1555 2.31 LINK CA CA A 475 O HOH A 659 1555 1555 2.43 LINK CA CA A 475 O HOH A 660 1555 1555 2.39 LINK O INN B 2 ZN ZN B 4 1555 1555 2.08 LINK O4 INN B 2 ZN ZN B 4 1555 1555 2.06 LINK ZN ZN B 4 NE2 HIS B 405 1555 1555 2.14 LINK ZN ZN B 4 NE2 HIS B 409 1555 1555 2.12 LINK ZN ZN B 4 NE2 HIS B 415 1555 1555 2.06 LINK ZN ZN B 4 O HOH B 642 1555 1555 2.47 CISPEP 1 TYR A 304 PRO A 305 0 8.64 CISPEP 2 TYR B 304 PRO B 305 0 8.52 CISPEP 3 SER B 355 PRO B 356 0 4.67 SITE 1 AC1 5 INN A 3 HIS A 405 HIS A 409 HIS A 415 SITE 2 AC1 5 HOH A 661 SITE 1 AC2 5 INN B 2 HIS B 405 HIS B 409 HIS B 415 SITE 2 AC2 5 HOH B 642 SITE 1 AC3 5 ASP A 342 PHE A 343 ASN A 389 HOH A 659 SITE 2 AC3 5 HOH A 660 SITE 1 AC4 17 ZN B 4 MET B 345 GLY B 346 THR B 347 SITE 2 AC4 17 LEU B 348 GLY B 349 ASN B 389 HIS B 405 SITE 3 AC4 17 GLU B 406 HIS B 409 HIS B 415 PRO B 437 SITE 4 AC4 17 ILE B 438 ALA B 439 HOH B 630 HOH B 642 SITE 5 AC4 17 HOH B 645 SITE 1 AC5 22 ZN A 1 GLU A 327 SER A 330 MET A 345 SITE 2 AC5 22 GLY A 346 THR A 347 LEU A 348 GLY A 349 SITE 3 AC5 22 ASN A 389 TYR A 390 HIS A 405 GLU A 406 SITE 4 AC5 22 HIS A 409 HIS A 415 PRO A 437 ILE A 438 SITE 5 AC5 22 ALA A 439 HOH A 642 HOH A 661 HOH A 662 SITE 6 AC5 22 HOH A 663 HOH A 665 SITE 1 AC6 5 ARG B 357 ALA B 358 ASN B 359 CIT B 500 SITE 2 AC6 5 HOH B 589 SITE 1 AC7 10 PRO A 356 HIS A 415 PRO A 437 ARG B 357 SITE 2 AC7 10 ASN B 359 SER B 360 HIS B 361 IMD B 475 SITE 3 AC7 10 HOH B 631 HOH B 643 SITE 1 AC8 2 GLU A 280 LEU B 420 SITE 1 AC9 5 LEU A 285 LYS A 286 SER A 287 PRO A 288 SITE 2 AC9 5 GLN A 289 SITE 1 BC1 2 LYS B 286 SER B 287 SITE 1 BC2 3 ILE B 279 GLU B 280 HOH B 646 CRYST1 74.394 75.639 103.713 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013442 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009642 0.00000