PDB Short entry for 2DE0 HEADER TRANSFERASE 07-FEB-06 2DE0 TITLE CRYSTAL STRUCTURE OF HUMAN ALPHA 1,6-FUCOSYLTRANSFERASE, FUT8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-(1,6)-FUCOSYLTRANSFERASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 68-575; COMPND 5 SYNONYM: GLYCOPROTEIN 6-ALPHA-L-FUCOSYLTRANSFERASE, GDP-FUCOSE-- COMPND 6 GLYCOPROTEIN FUCOSYLTRANSFERASE, GDP-L-FUC:N-ACETYL-BETA-D- COMPND 7 GLUCOSAMINIDE ALPHA1,6-FUCOSYLTRANSFERASE, ALPHA1-6FUCT, COMPND 8 FUCOSYLTRANSFERASE 8; COMPND 9 EC: 2.4.1.68; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67B KEYWDS FUT8, FUCOSYLTRANSFERASE, GLYCOSYLTRANSFERASE, N-GLYCAN, CORE FUCOSE, KEYWDS 2 SH3 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TANIGUCHI,H.IHARA,A.NAKAGAWA REVDAT 6 25-MAR-20 2DE0 1 JRNL REVDAT 5 11-MAR-20 2DE0 1 JRNL REMARK SEQADV REVDAT 4 13-JUL-11 2DE0 1 VERSN REVDAT 3 24-FEB-09 2DE0 1 VERSN REVDAT 2 22-MAY-07 2DE0 1 JRNL REVDAT 1 26-DEC-06 2DE0 0 JRNL AUTH H.IHARA,Y.IKEDA,S.TOMA,X.WANG,T.SUZUKI,J.GU,E.MIYOSHI, JRNL AUTH 2 T.TSUKIHARA,K.HONKE,A.MATSUMOTO,A.NAKAGAWA,N.TANIGUCHI JRNL TITL CRYSTAL STRUCTURE OF MAMMALIAN JRNL TITL 2 {ALPHA}1,6-FUCOSYLTRANSFERASE, FUT8 JRNL REF GLYCOBIOLOGY V. 17 455 2007 JRNL REFN ISSN 0959-6658 JRNL PMID 17172260 JRNL DOI 10.1093/GLYCOB/CWL079 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.IHARA,T.OKADA,N.TANIGUCHI,Y.IKEDA REMARK 1 TITL INVOLVEMENT OF THE ALPHA-HELICAL AND SRC HOMOLOGY 3 DOMAINS REMARK 1 TITL 2 IN THE MOLECULAR ASSEMBLY AND ENZYMATIC ACTIVITY OF HUMAN REMARK 1 TITL 3 ALPHA 1,6-FUCOSYLTRANSFERASE, FUT8. REMARK 1 REF BIOCHIM BIOPHYS ACTA GEN 29596 2020 REMARK 1 REF 2 SUBJ REMARK 1 REFN ISSN 1872-8006 REMARK 1 PMID 32147455 REMARK 1 DOI 10.1016/J.BBAGEN.2020.129596 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 26977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1578 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12000 REMARK 3 B22 (A**2) : 2.12000 REMARK 3 B33 (A**2) : -3.18000 REMARK 3 B12 (A**2) : 1.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.344 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3855 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5228 ; 1.749 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 7.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;38.540 ;23.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;21.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;24.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2963 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1949 ; 0.250 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2583 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 213 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2351 ; 0.824 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3706 ; 1.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1729 ; 1.937 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1522 ; 3.071 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000025305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-HEPES, 1.5M LITHIUM SULFATE REMARK 280 MONOHYDRATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 253.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 126.90000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 190.35000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.45000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 317.25000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 253.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 126.90000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.45000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 190.35000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 317.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 45.01500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 77.96827 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.45000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA X 63 REMARK 465 ASP X 64 REMARK 465 LEU X 65 REMARK 465 GLY X 66 REMARK 465 SER X 67 REMARK 465 ARG X 68 REMARK 465 ILE X 69 REMARK 465 PRO X 70 REMARK 465 GLU X 71 REMARK 465 GLY X 72 REMARK 465 PRO X 73 REMARK 465 ILE X 74 REMARK 465 ASP X 75 REMARK 465 GLN X 76 REMARK 465 GLY X 77 REMARK 465 PRO X 78 REMARK 465 ALA X 79 REMARK 465 ILE X 80 REMARK 465 GLY X 81 REMARK 465 ARG X 82 REMARK 465 VAL X 83 REMARK 465 ARG X 84 REMARK 465 VAL X 85 REMARK 465 LEU X 86 REMARK 465 GLU X 87 REMARK 465 GLU X 88 REMARK 465 GLN X 89 REMARK 465 LEU X 90 REMARK 465 VAL X 91 REMARK 465 LYS X 92 REMARK 465 ALA X 93 REMARK 465 LYS X 94 REMARK 465 GLU X 95 REMARK 465 GLN X 96 REMARK 465 ILE X 97 REMARK 465 GLU X 98 REMARK 465 ASN X 99 REMARK 465 TYR X 100 REMARK 465 LYS X 101 REMARK 465 LYS X 102 REMARK 465 GLN X 103 REMARK 465 THR X 104 REMARK 465 ARG X 105 REMARK 465 ASN X 106 REMARK 465 GLY X 107 REMARK 465 ASP X 368 REMARK 465 LYS X 369 REMARK 465 VAL X 370 REMARK 465 GLY X 371 REMARK 465 THR X 372 REMARK 465 ALA X 573 REMARK 465 GLU X 574 REMARK 465 LYS X 575 REMARK 465 ALA X 576 REMARK 465 GLY X 577 REMARK 465 GLY X 578 REMARK 465 GLY X 579 REMARK 465 HIS X 580 REMARK 465 HIS X 581 REMARK 465 HIS X 582 REMARK 465 HIS X 583 REMARK 465 HIS X 584 REMARK 465 HIS X 585 REMARK 465 GLY X 586 REMARK 465 GLY X 587 REMARK 465 GLY X 588 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR X 443 ND2 ASN X 445 2.14 REMARK 500 OD1 ASP X 174 O HOH X 724 2.19 REMARK 500 O HOH X 595 O HOH X 657 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS X 465 CB CYS X 465 SG -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 117 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 139 51.76 -104.81 REMARK 500 ASN X 143 -73.01 -10.71 REMARK 500 TYR X 197 -74.10 -56.45 REMARK 500 CYS X 218 171.26 178.15 REMARK 500 CYS X 266 68.77 -161.82 REMARK 500 LYS X 284 -41.51 -29.90 REMARK 500 ASP X 322 78.11 -151.65 REMARK 500 ARG X 366 -165.14 -111.66 REMARK 500 ALA X 375 82.25 177.42 REMARK 500 HIS X 377 -63.59 -174.87 REMARK 500 ASP X 409 30.87 -85.86 REMARK 500 SER X 431 133.65 -37.11 REMARK 500 ASN X 445 32.77 -73.54 REMARK 500 CYS X 465 -156.51 -158.46 REMARK 500 ASN X 489 34.53 -88.03 REMARK 500 ASP X 494 -93.22 -139.45 REMARK 500 ASP X 527 126.64 -38.68 REMARK 500 ASP X 537 24.09 -141.43 REMARK 500 PRO X 571 26.54 -63.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS X 298 PRO X 299 137.22 REMARK 500 PHE X 376 HIS X 377 -136.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH X 666 DISTANCE = 6.77 ANGSTROMS DBREF 2DE0 X 68 575 UNP Q9BYC5 FUT8_HUMAN 68 575 SEQADV 2DE0 ALA X 63 UNP Q9BYC5 CLONING ARTIFACT SEQADV 2DE0 ASP X 64 UNP Q9BYC5 CLONING ARTIFACT SEQADV 2DE0 LEU X 65 UNP Q9BYC5 CLONING ARTIFACT SEQADV 2DE0 GLY X 66 UNP Q9BYC5 CLONING ARTIFACT SEQADV 2DE0 SER X 67 UNP Q9BYC5 CLONING ARTIFACT SEQADV 2DE0 ALA X 576 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 577 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 578 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 579 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 580 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 581 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 582 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 583 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 584 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 HIS X 585 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 586 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 587 UNP Q9BYC5 EXPRESSION TAG SEQADV 2DE0 GLY X 588 UNP Q9BYC5 EXPRESSION TAG SEQRES 1 X 526 ALA ASP LEU GLY SER ARG ILE PRO GLU GLY PRO ILE ASP SEQRES 2 X 526 GLN GLY PRO ALA ILE GLY ARG VAL ARG VAL LEU GLU GLU SEQRES 3 X 526 GLN LEU VAL LYS ALA LYS GLU GLN ILE GLU ASN TYR LYS SEQRES 4 X 526 LYS GLN THR ARG ASN GLY LEU GLY LYS ASP HIS GLU ILE SEQRES 5 X 526 LEU ARG ARG ARG ILE GLU ASN GLY ALA LYS GLU LEU TRP SEQRES 6 X 526 PHE PHE LEU GLN SER GLU LEU LYS LYS LEU LYS ASN LEU SEQRES 7 X 526 GLU GLY ASN GLU LEU GLN ARG HIS ALA ASP GLU PHE LEU SEQRES 8 X 526 LEU ASP LEU GLY HIS HIS GLU ARG SER ILE MET THR ASP SEQRES 9 X 526 LEU TYR TYR LEU SER GLN THR ASP GLY ALA GLY ASP TRP SEQRES 10 X 526 ARG GLU LYS GLU ALA LYS ASP LEU THR GLU LEU VAL GLN SEQRES 11 X 526 ARG ARG ILE THR TYR LEU GLN ASN PRO LYS ASP CYS SER SEQRES 12 X 526 LYS ALA LYS LYS LEU VAL CYS ASN ILE ASN LYS GLY CYS SEQRES 13 X 526 GLY TYR GLY CYS GLN LEU HIS HIS VAL VAL TYR CYS PHE SEQRES 14 X 526 MET ILE ALA TYR GLY THR GLN ARG THR LEU ILE LEU GLU SEQRES 15 X 526 SER GLN ASN TRP ARG TYR ALA THR GLY GLY TRP GLU THR SEQRES 16 X 526 VAL PHE ARG PRO VAL SER GLU THR CYS THR ASP ARG SER SEQRES 17 X 526 GLY ILE SER THR GLY HIS TRP SER GLY GLU VAL LYS ASP SEQRES 18 X 526 LYS ASN VAL GLN VAL VAL GLU LEU PRO ILE VAL ASP SER SEQRES 19 X 526 LEU HIS PRO ARG PRO PRO TYR LEU PRO LEU ALA VAL PRO SEQRES 20 X 526 GLU ASP LEU ALA ASP ARG LEU VAL ARG VAL HIS GLY ASP SEQRES 21 X 526 PRO ALA VAL TRP TRP VAL SER GLN PHE VAL LYS TYR LEU SEQRES 22 X 526 ILE ARG PRO GLN PRO TRP LEU GLU LYS GLU ILE GLU GLU SEQRES 23 X 526 ALA THR LYS LYS LEU GLY PHE LYS HIS PRO VAL ILE GLY SEQRES 24 X 526 VAL HIS VAL ARG ARG THR ASP LYS VAL GLY THR GLU ALA SEQRES 25 X 526 ALA PHE HIS PRO ILE GLU GLU TYR MET VAL HIS VAL GLU SEQRES 26 X 526 GLU HIS PHE GLN LEU LEU ALA ARG ARG MET GLN VAL ASP SEQRES 27 X 526 LYS LYS ARG VAL TYR LEU ALA THR ASP ASP PRO SER LEU SEQRES 28 X 526 LEU LYS GLU ALA LYS THR LYS TYR PRO ASN TYR GLU PHE SEQRES 29 X 526 ILE SER ASP ASN SER ILE SER TRP SER ALA GLY LEU HIS SEQRES 30 X 526 ASN ARG TYR THR GLU ASN SER LEU ARG GLY VAL ILE LEU SEQRES 31 X 526 ASP ILE HIS PHE LEU SER GLN ALA ASP PHE LEU VAL CYS SEQRES 32 X 526 THR PHE SER SER GLN VAL CYS ARG VAL ALA TYR GLU ILE SEQRES 33 X 526 MET GLN THR LEU HIS PRO ASP ALA SER ALA ASN PHE HIS SEQRES 34 X 526 SER LEU ASP ASP ILE TYR TYR PHE GLY GLY GLN ASN ALA SEQRES 35 X 526 HIS ASN GLN ILE ALA ILE TYR ALA HIS GLN PRO ARG THR SEQRES 36 X 526 ALA ASP GLU ILE PRO MET GLU PRO GLY ASP ILE ILE GLY SEQRES 37 X 526 VAL ALA GLY ASN HIS TRP ASP GLY TYR SER LYS GLY VAL SEQRES 38 X 526 ASN ARG LYS LEU GLY ARG THR GLY LEU TYR PRO SER TYR SEQRES 39 X 526 LYS VAL ARG GLU LYS ILE GLU THR VAL LYS TYR PRO THR SEQRES 40 X 526 TYR PRO GLU ALA GLU LYS ALA GLY GLY GLY HIS HIS HIS SEQRES 41 X 526 HIS HIS HIS GLY GLY GLY FORMUL 2 HOH *137(H2 O) HELIX 1 1 GLY X 109 ASN X 139 1 31 HELIX 2 2 GLU X 141 THR X 173 1 33 HELIX 3 3 GLY X 175 ASN X 200 1 26 HELIX 4 4 ASP X 203 ALA X 207 5 5 HELIX 5 5 GLY X 219 THR X 237 1 19 HELIX 6 6 GLY X 254 VAL X 258 5 5 HELIX 7 7 VAL X 281 VAL X 286 5 6 HELIX 8 8 ILE X 293 LEU X 297 5 5 HELIX 9 9 LEU X 312 HIS X 320 1 9 HELIX 10 10 ASP X 322 ILE X 336 1 15 HELIX 11 11 GLN X 339 GLY X 354 1 16 HELIX 12 12 PRO X 378 ARG X 395 1 18 HELIX 13 13 ASP X 410 TYR X 421 1 12 HELIX 14 14 ALA X 436 TYR X 442 5 7 HELIX 15 15 ASN X 445 ALA X 460 1 16 HELIX 16 16 SER X 469 GLN X 480 1 12 SHEET 1 A 3 THR X 240 GLU X 244 0 SHEET 2 A 3 LYS X 209 ASN X 213 1 N CYS X 212 O GLU X 244 SHEET 3 A 3 VAL X 288 LEU X 291 1 O LEU X 291 N VAL X 211 SHEET 1 B 2 VAL X 308 PRO X 309 0 SHEET 2 B 2 THR X 564 VAL X 565 1 O VAL X 565 N VAL X 308 SHEET 1 C 5 GLU X 425 ILE X 427 0 SHEET 2 C 5 ARG X 403 THR X 408 1 N VAL X 404 O GLU X 425 SHEET 3 C 5 VAL X 359 VAL X 364 1 N VAL X 362 O ALA X 407 SHEET 4 C 5 PHE X 462 CYS X 465 1 O VAL X 464 N GLY X 361 SHEET 5 C 5 PHE X 490 SER X 492 1 O HIS X 491 N LEU X 463 SHEET 1 D 5 THR X 550 PRO X 554 0 SHEET 2 D 5 TYR X 539 ASN X 544 -1 N SER X 540 O TYR X 553 SHEET 3 D 5 ILE X 528 ASN X 534 -1 N GLY X 530 O VAL X 543 SHEET 4 D 5 ASN X 506 ALA X 509 -1 N GLN X 507 O ILE X 529 SHEET 5 D 5 VAL X 558 GLU X 560 -1 O ARG X 559 N ILE X 508 SSBOND 1 CYS X 204 CYS X 266 1555 1555 2.12 SSBOND 2 CYS X 212 CYS X 230 1555 1555 2.08 SSBOND 3 CYS X 218 CYS X 222 1555 1555 2.08 SSBOND 4 CYS X 465 CYS X 472 1555 1555 2.03 CISPEP 1 PRO X 305 LEU X 306 0 10.01 CISPEP 2 HIS X 357 PRO X 358 0 4.82 CRYST1 90.030 90.030 380.700 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011107 0.006413 0.000000 0.00000 SCALE2 0.000000 0.012826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002627 0.00000