PDB Short entry for 2DGC HEADER TRANSCRIPTION/DNA 28-SEP-95 2DGC TITLE GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (GCN4); COMPND 8 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 5 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 6 ORGANISM_TAXID: 4932 KEYWDS BASIC DOMAIN, LEUCINE ZIPPER, DNA BINDING, EUKARYOTIC REGULATORY KEYWDS 2 PROTEIN, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.KELLER,P.KOENIG,T.J.RICHMOND REVDAT 4 14-FEB-24 2DGC 1 REMARK REVDAT 3 24-FEB-09 2DGC 1 VERSN REVDAT 2 01-APR-03 2DGC 1 JRNL REVDAT 1 08-MAR-96 2DGC 0 JRNL AUTH W.KELLER,P.KONIG,T.J.RICHMOND JRNL TITL CRYSTAL STRUCTURE OF A BZIP/DNA COMPLEX AT 2.2 A: JRNL TITL 2 DETERMINANTS OF DNA SPECIFIC RECOGNITION. JRNL REF J.MOL.BIOL. V. 254 657 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7500340 JRNL DOI 10.1006/JMBI.1995.0645 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.KOENIG,T.J.RICHMOND REMARK 1 TITL THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE REMARK 1 TITL 2 DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY REMARK 1 REF J.MOL.BIOL. V. 233 139 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.E.ELLENBERGER,C.J.BRANDL,K.STRUHL,S.C.HARRISON REMARK 1 TITL THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A DIMER OF REMARK 1 TITL 2 UNINTERRUPTED ALPHA HELICES: CRYSTAL STRUCTURE OF THE REMARK 1 TITL 3 PROTEIN-DNA COMPLEX REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 71 1223 1992 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.7 REMARK 3 NUMBER OF REFLECTIONS : 5576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 405 REMARK 3 NUCLEIC ACID ATOMS : 386 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM11.DNA REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177993. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.00 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : OSCREF, OSCKRUNCH REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.60, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.44000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.33000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.72000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.16000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.72000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.33000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.33000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.16000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 43.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA REMARK 300 COMPLEX PER ASYMMETRIC UNIT. REMARK 300 REMARK 300 MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF REMARK 300 SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD REMARK 300 AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY REMARK 300 APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND REMARK 300 TRANSLATION VECTOR TO THE COORDINATES X Y Z: REMARK 300 REMARK 300 SYMMETRY REMARK 300 THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED REMARK 300 BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. REMARK 300 REMARK 300 APPLIED TO RESIDUES: A 229 .. 277 REMARK 300 APPLIED TO RESIDUES: B -10 .. 9 REMARK 300 SYMMETRY1 1 0.000000 -1.000000 0.000000 117.32000 REMARK 300 SYMMETRY2 1 -1.000000 0.000000 0.000000 117.32000 REMARK 300 SYMMETRY3 1 0.000000 0.000000 -1.000000 43.44000 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 117.32000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 117.32000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.44000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 219 REMARK 465 ILE A 220 REMARK 465 VAL A 221 REMARK 465 PRO A 222 REMARK 465 GLU A 223 REMARK 465 SER A 224 REMARK 465 SER A 225 REMARK 465 ASP A 226 REMARK 465 PRO A 227 REMARK 465 ALA A 228 REMARK 465 VAL A 278 REMARK 465 GLY A 279 REMARK 465 GLU A 280 REMARK 465 ARG A 281 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 LEU A 277 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B -10 C5' DT B -10 C4' 0.058 REMARK 500 DT B -10 N1 DT B -10 C2 0.056 REMARK 500 DG B -9 C5' DG B -9 C4' 0.058 REMARK 500 DG B -9 C6 DG B -9 N1 -0.045 REMARK 500 DG B -8 P DG B -8 O5' 0.095 REMARK 500 DG B -8 C5' DG B -8 C4' 0.058 REMARK 500 DA B -2 N9 DA B -2 C4 0.045 REMARK 500 DG B 1 C6 DG B 1 N1 -0.051 REMARK 500 DT B 2 C5 DT B 2 C7 0.064 REMARK 500 DC B 6 P DC B 6 O5' 0.092 REMARK 500 DC B 6 O3' DT B 7 P 0.117 REMARK 500 DC B 8 P DC B 8 O5' 0.082 REMARK 500 DC B 9 P DC B 9 O5' 0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B -10 O4' - C1' - C2' ANGL. DEV. = -6.9 DEGREES REMARK 500 DT B -10 O4' - C1' - N1 ANGL. DEV. = 9.7 DEGREES REMARK 500 DT B -10 C4 - C5 - C6 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT B -10 N3 - C2 - O2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG B -9 O4' - C1' - N9 ANGL. DEV. = -5.9 DEGREES REMARK 500 DG B -8 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DA B -7 C5' - C4' - O4' ANGL. DEV. = 9.1 DEGREES REMARK 500 DA B -7 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA B -5 C1' - O4' - C4' ANGL. DEV. = 5.5 DEGREES REMARK 500 DA B -5 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DT B -4 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT B -4 C3' - O3' - P ANGL. DEV. = 12.5 DEGREES REMARK 500 DG B -3 O4' - C4' - C3' ANGL. DEV. = 5.0 DEGREES REMARK 500 DG B -3 C3' - O3' - P ANGL. DEV. = 10.7 DEGREES REMARK 500 DA B -2 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 DA B -2 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DC B -1 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 1 C3' - O3' - P ANGL. DEV. = 14.3 DEGREES REMARK 500 DT B 2 N1 - C2 - N3 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT B 2 N3 - C2 - O2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DC B 3 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC B 3 N1 - C2 - O2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA B 4 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 DT B 5 C5' - C4' - C3' ANGL. DEV. = -12.2 DEGREES REMARK 500 DT B 5 C5' - C4' - O4' ANGL. DEV. = 6.8 DEGREES REMARK 500 DT B 5 C1' - O4' - C4' ANGL. DEV. = -7.1 DEGREES REMARK 500 DT B 5 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT B 5 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC B 6 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC B 6 N1 - C2 - O2 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT B 7 C5' - C4' - C3' ANGL. DEV. = -11.1 DEGREES REMARK 500 DT B 7 N3 - C2 - O2 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 8 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC B 8 N1 - C2 - O2 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC B 8 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC B 8 C3' - O3' - P ANGL. DEV. = 10.3 DEGREES REMARK 500 DC B 9 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DGC RELATED DB: PDB REMARK 900 2DGC IS A HIGH RESOLUTION, FULLY REFINED VERSION OF 1DGC THAT REMARK 900 INCLUDES 46 WATER MOLECULES. REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMINO ACID NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE REMARK 999 281 AMINO ACIDS OF INTACT GCN4. REMARK 999 REMARK 999 RESIDUE NUMBERING OF NUCLEOTIDES: REMARK 999 5' T G G A G A T G A C G T C A T C T REMARK 999 -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 1 2 3 4 5 6 7 REMARK 999 REMARK 999 C C 3' REMARK 999 8 9 DBREF 2DGC A 220 281 UNP P03069 GCN4_YEAST 220 281 DBREF 2DGC B -10 9 PDB 2DGC 2DGC -10 9 SEQRES 1 B 19 DT DG DG DA DG DA DT DG DA DC DG DT DC SEQRES 2 B 19 DA DT DC DT DC DC SEQRES 1 A 63 MET ILE VAL PRO GLU SER SER ASP PRO ALA ALA LEU LYS SEQRES 2 A 63 ARG ALA ARG ASN THR GLU ALA ALA ARG ARG SER ARG ALA SEQRES 3 A 63 ARG LYS LEU GLN ARG MET LYS GLN LEU GLU ASP LYS VAL SEQRES 4 A 63 GLU GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 5 A 63 VAL ALA ARG LEU LYS LYS LEU VAL GLY GLU ARG FORMUL 3 HOH *46(H2 O) HELIX 1 1 ALA A 229 LYS A 276 1 48 CRYST1 58.660 58.660 86.880 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011510 0.00000