PDB Short entry for 2DHJ HEADER SIGNALING PROTEIN 24-MAR-06 2DHJ TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF RHO GTPASE ACTIVATING PROTEIN TITLE 2 21 FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GTPASE ACTIVATING PROTEIN 21; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGAP21; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-10; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PH DOMAIN, RHO GTPASE ACTIVATING PROTEIN 21, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DHJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DHJ 1 VERSN REVDAT 1 24-SEP-06 2DHJ 0 JRNL AUTH H.LI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF RHO GTPASE ACTIVATING JRNL TITL 2 PROTEIN 21 FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DHJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025422. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.01MM PH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL (PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 21 149.00 -170.51 REMARK 500 1 PRO A 34 -171.49 -69.73 REMARK 500 1 PRO A 59 -179.92 -69.76 REMARK 500 1 SER A 60 171.27 -51.61 REMARK 500 1 ASP A 74 117.38 -161.20 REMARK 500 1 ILE A 75 95.98 -37.50 REMARK 500 1 SER A 76 149.90 -34.84 REMARK 500 1 TYR A 77 153.66 -45.74 REMARK 500 1 SER A 78 44.19 -94.97 REMARK 500 1 GLU A 100 -64.34 -93.49 REMARK 500 1 ASN A 119 42.53 -85.86 REMARK 500 1 SER A 120 43.40 -88.59 REMARK 500 1 PRO A 122 92.11 -69.78 REMARK 500 1 SER A 123 42.15 -106.38 REMARK 500 2 SER A 2 -32.15 -36.67 REMARK 500 2 ARG A 27 42.71 39.54 REMARK 500 2 VAL A 28 50.19 -116.76 REMARK 500 2 PRO A 34 -176.40 -69.81 REMARK 500 2 TRP A 35 138.28 -35.79 REMARK 500 2 VAL A 68 31.25 -82.98 REMARK 500 2 SER A 76 131.14 -34.23 REMARK 500 2 TYR A 77 162.81 -41.37 REMARK 500 2 LYS A 81 46.69 -80.02 REMARK 500 2 ASN A 84 50.21 37.42 REMARK 500 2 MET A 105 -70.52 -55.16 REMARK 500 3 ASP A 23 95.75 -68.16 REMARK 500 3 LYS A 24 94.03 -38.45 REMARK 500 3 VAL A 28 145.39 -174.48 REMARK 500 3 TYR A 39 107.51 -44.59 REMARK 500 3 GLU A 55 55.01 36.05 REMARK 500 3 GLU A 61 -32.16 -34.83 REMARK 500 3 GLU A 63 97.36 -33.26 REMARK 500 3 ASN A 69 -37.24 -35.57 REMARK 500 3 ILE A 75 102.96 -44.34 REMARK 500 3 SER A 76 159.96 -41.04 REMARK 500 3 ARG A 82 173.53 -52.70 REMARK 500 3 SER A 116 39.93 -86.89 REMARK 500 3 LEU A 118 131.29 -38.27 REMARK 500 3 SER A 124 42.17 -103.47 REMARK 500 4 THR A 22 -58.29 -134.94 REMARK 500 4 LYS A 24 78.29 -117.42 REMARK 500 4 ARG A 27 44.45 -97.91 REMARK 500 4 ILE A 32 42.87 39.52 REMARK 500 4 SER A 60 127.13 -35.61 REMARK 500 4 GLU A 62 -61.08 -94.14 REMARK 500 4 GLU A 63 170.14 -57.87 REMARK 500 4 ILE A 75 96.74 -41.55 REMARK 500 4 SER A 76 151.96 -34.87 REMARK 500 4 TYR A 77 106.86 -53.00 REMARK 500 4 LYS A 81 -38.58 -33.87 REMARK 500 REMARK 500 THIS ENTRY HAS 294 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002201396.1 RELATED DB: TARGETDB DBREF 2DHJ A 8 119 UNP Q7Z3P7 Q7Z3P7_HUMAN 760 871 SEQADV 2DHJ GLY A 1 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 2 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 3 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ GLY A 4 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 5 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 6 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ GLY A 7 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 120 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ GLY A 121 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ PRO A 122 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 123 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ SER A 124 UNP Q7Z3P7 CLONING ARTIFACT SEQADV 2DHJ GLY A 125 UNP Q7Z3P7 CLONING ARTIFACT SEQRES 1 A 125 GLY SER SER GLY SER SER GLY ASP ALA ALA LYS GLU GLY SEQRES 2 A 125 TRP LEU HIS PHE ARG PRO LEU VAL THR ASP LYS GLY LYS SEQRES 3 A 125 ARG VAL GLY GLY SER ILE ARG PRO TRP LYS GLN MET TYR SEQRES 4 A 125 VAL VAL LEU ARG GLY HIS SER LEU TYR LEU TYR LYS ASP SEQRES 5 A 125 LYS ARG GLU GLN THR THR PRO SER GLU GLU GLU GLN PRO SEQRES 6 A 125 ILE SER VAL ASN ALA CYS LEU ILE ASP ILE SER TYR SER SEQRES 7 A 125 GLU THR LYS ARG LYS ASN VAL PHE ARG LEU THR THR SER SEQRES 8 A 125 ASP CYS GLU CYS LEU PHE GLN ALA GLU ASP ARG ASP ASP SEQRES 9 A 125 MET LEU ALA TRP ILE LYS THR ILE GLN GLU SER SER ASN SEQRES 10 A 125 LEU ASN SER GLY PRO SER SER GLY HELIX 1 1 ARG A 102 SER A 116 1 15 SHEET 1 A 4 LYS A 11 PHE A 17 0 SHEET 2 A 4 LYS A 36 ARG A 43 -1 O LEU A 42 N LYS A 11 SHEET 3 A 4 SER A 46 TYR A 50 -1 O TYR A 48 N VAL A 41 SHEET 4 A 4 ILE A 66 SER A 67 -1 O ILE A 66 N LEU A 47 SHEET 1 B 3 CYS A 71 ASP A 74 0 SHEET 2 B 3 VAL A 85 THR A 90 -1 O ARG A 87 N ASP A 74 SHEET 3 B 3 GLU A 94 GLN A 98 -1 O PHE A 97 N PHE A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000