PDB Short entry for 2DIM
HEADER    DNA BINDING PROTEIN                     30-MAR-06   2DIM              
TITLE     SOLUTION STRUCTURE OF THE MYB_DNA-BINDING DOMAIN OF HUMAN CELL        
TITLE    2 DIVISION CYCLE 5-LIKE PROTEIN                                        
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CELL DIVISION CYCLE 5-LIKE PROTEIN;                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: MYB_DNA-BINDING DOMAIN;                                    
COMPND   5 SYNONYM: CDC5-LIKE PROTEIN, POMBE CDC5-RELATED PROTEIN;              
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: CDC5L;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P050822-18;                               
SOURCE   8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    MYB_DNA-BINDING DOMAIN, CELL CYCLE, DNA BINDING, SPLICEOSOME,         
KEYWDS   2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   4 INITIATIVE, RSGI, DNA BINDING PROTEIN                                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN       
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2DIM    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2DIM    1       VERSN                                    
REVDAT   1   03-APR-07 2DIM    0                                                
JRNL        AUTH   M.YONEYAMA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA    
JRNL        TITL   SOLUTION STRUCTURE OF THE MYB_DNA-BINDING DOMAIN OF HUMAN    
JRNL        TITL 2 CELL DIVISION CYCLE 5-LIKE PROTEIN                           
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DIM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000025455.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.19MM MYB_DNA-BINDING DOMAIN U    
REMARK 210                                   -15N, 13C; 20MM D-TRIS HCL (PH     
REMARK 210                                   7.0); 100MM NACL; 1MM D-DTT;       
REMARK 210                                   0.02% NAN3; 90% H2O, 10% D2O       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 900 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20030801, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9736, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES WITH   
REMARK 210                                   THE LEAST RESTRAINT VIOLATIONS     
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   5      -54.54   -128.92                                   
REMARK 500  1 VAL A  11      176.37    -58.87                                   
REMARK 500  1 LYS A  29       43.22    -85.74                                   
REMARK 500  1 ASN A  30      -39.29   -131.29                                   
REMARK 500  1 GLN A  31       38.11    -82.91                                   
REMARK 500  1 ARG A  41       35.27     71.26                                   
REMARK 500  1 TRP A  51      -71.57    -63.62                                   
REMARK 500  1 SER A  58      -39.34    -38.86                                   
REMARK 500  2 GLN A  31       30.32    -85.07                                   
REMARK 500  2 TRP A  51      -73.12    -66.58                                   
REMARK 500  2 ASP A  56      140.13   -173.37                                   
REMARK 500  2 ILE A  59      141.13    -37.90                                   
REMARK 500  2 TRP A  64      108.08    -57.77                                   
REMARK 500  2 SER A  68       43.80    -80.76                                   
REMARK 500  3 SER A   6       79.91   -119.56                                   
REMARK 500  3 LYS A  29       43.22    -80.72                                   
REMARK 500  3 ASN A  30      -38.12   -133.22                                   
REMARK 500  3 GLN A  31       49.50    -83.68                                   
REMARK 500  3 TRP A  51      -70.33    -68.59                                   
REMARK 500  3 ASP A  56      139.81   -170.47                                   
REMARK 500  3 LYS A  60       44.73    -91.51                                   
REMARK 500  3 GLU A  63       38.59     37.82                                   
REMARK 500  4 SER A   5      -43.37   -131.22                                   
REMARK 500  4 LYS A   8      -42.67   -132.33                                   
REMARK 500  4 GLN A  31       37.29    -85.76                                   
REMARK 500  4 ILE A  59      147.65    -39.16                                   
REMARK 500  4 GLU A  63      165.85    -47.67                                   
REMARK 500  5 SER A   2       42.20    -96.75                                   
REMARK 500  5 SER A   5      -50.76   -128.36                                   
REMARK 500  5 SER A   6       41.95    -94.34                                   
REMARK 500  5 LYS A  29       37.66    -84.20                                   
REMARK 500  5 ASN A  30      -31.41   -130.30                                   
REMARK 500  5 GLN A  31       37.93    -88.64                                   
REMARK 500  5 TRP A  51      -74.22    -66.80                                   
REMARK 500  5 ASP A  56      139.56   -172.45                                   
REMARK 500  5 LYS A  60       44.29    -91.34                                   
REMARK 500  5 LYS A  61       41.52   -104.17                                   
REMARK 500  5 TRP A  64      118.77    -37.56                                   
REMARK 500  6 LYS A  29       41.27    -81.67                                   
REMARK 500  6 ASN A  30      -34.53   -132.05                                   
REMARK 500  6 GLN A  31       40.72    -85.88                                   
REMARK 500  6 TRP A  51      -71.89    -63.24                                   
REMARK 500  6 ASP A  56      140.28   -173.33                                   
REMARK 500  6 ILE A  59      138.24    -37.69                                   
REMARK 500  6 LYS A  61      -51.35   -131.80                                   
REMARK 500  6 PRO A  67        2.72    -69.75                                   
REMARK 500  7 SER A   5      -60.70   -106.80                                   
REMARK 500  7 SER A   6       42.33     34.52                                   
REMARK 500  7 GLN A  31       45.74    -82.81                                   
REMARK 500  7 ASP A  56      137.02   -170.72                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     134 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2DIN   RELATED DB: PDB                                   
REMARK 900 THE DIFFERENT FRAGMENT OF THE SAME PROTEIN                           
DBREF  2DIM A    8    64  UNP    Q99459   CDC5L_HUMAN      7     63             
SEQADV 2DIM GLY A    1  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A    2  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A    3  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM GLY A    4  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A    5  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A    6  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM GLY A    7  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A   65  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM GLY A   66  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM PRO A   67  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A   68  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM SER A   69  UNP  Q99459              CLONING ARTIFACT               
SEQADV 2DIM GLY A   70  UNP  Q99459              CLONING ARTIFACT               
SEQRES   1 A   70  GLY SER SER GLY SER SER GLY LYS GLY GLY VAL TRP ARG          
SEQRES   2 A   70  ASN THR GLU ASP GLU ILE LEU LYS ALA ALA VAL MET LYS          
SEQRES   3 A   70  TYR GLY LYS ASN GLN TRP SER ARG ILE ALA SER LEU LEU          
SEQRES   4 A   70  HIS ARG LYS SER ALA LYS GLN CYS LYS ALA ARG TRP TYR          
SEQRES   5 A   70  GLU TRP LEU ASP PRO SER ILE LYS LYS THR GLU TRP SER          
SEQRES   6 A   70  GLY PRO SER SER GLY                                          
HELIX    1   1 ARG A   13  TYR A   27  1                                  15    
HELIX    2   2 GLN A   31  LEU A   39  1                                   9    
HELIX    3   3 SER A   43  TRP A   54  1                                  12    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000