PDB Short entry for 2DJ7
HEADER    METAL BINDING PROTEIN                   31-MAR-06   2DJ7              
TITLE     SOLUTION STRUCTURE OF 3RD LIM DOMAIN OF ACTIN-BINDING LIM PROTEIN 3   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ACTIN-BINDING LIM PROTEIN 3;                               
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: LIM DOMAIN;                                                
COMPND   5 SYNONYM: ACTIN-BINDING LIM PROTEIN FAMILY MEMBER 3, ABLIM3;          
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ABLIM3;                                                        
SOURCE   6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P050111-11;                               
SOURCE   9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    LIM DOMAIN, ACTIN-BINDING LIM PROTEIN 3, ZN BINDING PROTEIN,          
KEYWDS   2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   4 INITIATIVE, RSGI, METAL BINDING PROTEIN                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.N.NIRAULA,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN    
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2DJ7    1       REMARK SEQADV LINK                       
REVDAT   2   24-FEB-09 2DJ7    1       VERSN                                    
REVDAT   1   01-OCT-06 2DJ7    0                                                
JRNL        AUTH   T.N.NIRAULA,A.SASAGAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA 
JRNL        TITL   SOLUTION STRUCTURE OF 3RD LIM DOMAIN OF ACTIN-BINDING LIM    
JRNL        TITL 2 PROTEIN 3                                                    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.5, CYANA 2.0.17                            
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUENTERT, P. (CYANA)               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DJ7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000025476.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.34MM LIM DOMAIN, U-13C, 15N;     
REMARK 210                                   20MM D-TRIS_HCL (PH 7.0); 100MM    
REMARK 210                                   NACL; 1MM D-DTT, 0.02% NAN3;       
REMARK 210                                   0.05MM ZNCL2; 1MM IDA; 90% H2O,    
REMARK 210                                   10% D20                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.955, CYANA 2.0.17         
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES WITH   
REMARK 210                                   THE LEAST RESTRAINT VIOLATIONS     
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LYS A  11       39.93    -91.03                                   
REMARK 500  1 PRO A  15     -167.99    -69.78                                   
REMARK 500  1 CYS A  45      167.20    -48.76                                   
REMARK 500  1 ASP A  60       29.46     41.12                                   
REMARK 500  1 SER A  67      -70.92    -87.96                                   
REMARK 500  1 SER A  79       47.75    -83.21                                   
REMARK 500  2 LYS A  26       39.73    -81.71                                   
REMARK 500  2 HIS A  27       40.55     34.58                                   
REMARK 500  2 GLN A  29       42.98    -80.55                                   
REMARK 500  2 ASP A  35       25.61     49.26                                   
REMARK 500  2 PHE A  43       97.39    -69.89                                   
REMARK 500  2 CYS A  45      166.63    -49.55                                   
REMARK 500  2 SER A  49       49.23     70.72                                   
REMARK 500  2 ASP A  60       26.28     44.11                                   
REMARK 500  2 SER A  67      -70.76    -87.63                                   
REMARK 500  2 SER A  75      149.06   -171.06                                   
REMARK 500  3 SER A   2      118.53   -174.52                                   
REMARK 500  3 SER A   5      -62.14   -102.22                                   
REMARK 500  3 LYS A  11       51.53   -115.23                                   
REMARK 500  3 PRO A  15     -175.79    -69.73                                   
REMARK 500  3 GLN A  29       35.63     35.24                                   
REMARK 500  3 ALA A  33      133.69   -172.09                                   
REMARK 500  3 SER A  67      -71.19    -90.22                                   
REMARK 500  3 PRO A  77       90.52    -69.78                                   
REMARK 500  4 PRO A  15     -175.61    -69.78                                   
REMARK 500  4 HIS A  27       89.82    -65.09                                   
REMARK 500  4 ASP A  60       28.25     41.82                                   
REMARK 500  4 SER A  67      -70.54    -88.24                                   
REMARK 500  4 GLN A  72      -62.04    -95.75                                   
REMARK 500  4 PRO A  77       11.45    -69.82                                   
REMARK 500  4 SER A  78      122.19    -27.46                                   
REMARK 500  5 SER A   5      147.06   -173.77                                   
REMARK 500  5 ARG A  13      146.94   -175.23                                   
REMARK 500  5 PRO A  15     -172.51    -69.78                                   
REMARK 500  5 ALA A  33      130.58   -173.27                                   
REMARK 500  5 CYS A  45      166.70    -47.72                                   
REMARK 500  5 ASP A  60       26.81     41.72                                   
REMARK 500  5 SER A  67      -70.80    -88.27                                   
REMARK 500  5 PRO A  77       15.90    -69.78                                   
REMARK 500  6 SER A   2       41.56     37.06                                   
REMARK 500  6 PRO A   9     -173.67    -69.74                                   
REMARK 500  6 ILE A  12       79.46   -118.74                                   
REMARK 500  6 HIS A  27      130.12    -34.52                                   
REMARK 500  6 ALA A  33      137.72   -171.89                                   
REMARK 500  6 SER A  67      -70.70    -89.05                                   
REMARK 500  6 GLN A  72      -63.68    -96.64                                   
REMARK 500  7 PRO A   9     -174.18    -69.83                                   
REMARK 500  7 ARG A  13       48.14     34.42                                   
REMARK 500  7 HIS A  27      -38.40    -37.05                                   
REMARK 500  7 CYS A  45      166.84    -47.49                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     146 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  18   SG                                                     
REMARK 620 2 CYS A  21   SG  101.1                                              
REMARK 620 3 HIS A  39   ND1 107.2 101.3                                        
REMARK 620 4 CYS A  42   SG  116.4 115.3 113.8                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A 401  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  45   SG                                                     
REMARK 620 2 CYS A  48   SG   97.0                                              
REMARK 620 3 CYS A  65   SG  114.9 101.9                                        
REMARK 620 4 ASP A  68   OD1 118.4 109.9 112.0                                  
REMARK 620 5 ASP A  68   OD2  99.3  99.7 136.4  24.4                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSI002003873.1   RELATED DB: TARGETDB                    
DBREF  2DJ7 A    8    74  UNP    O94929   ABLM3_HUMAN    120    135             
SEQADV 2DJ7 GLY A    1  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A    2  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A    3  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 GLY A    4  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A    5  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A    6  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 GLY A    7  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A   75  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 GLY A   76  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 PRO A   77  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A   78  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 SER A   79  UNP  O94929              CLONING ARTIFACT               
SEQADV 2DJ7 GLY A   80  UNP  O94929              CLONING ARTIFACT               
SEQRES   1 A   80  GLY SER SER GLY SER SER GLY LYS PRO ILE LYS ILE ARG          
SEQRES   2 A   80  GLY PRO SER HIS CYS ALA GLY CYS LYS GLU GLU ILE LYS          
SEQRES   3 A   80  HIS GLY GLN SER LEU LEU ALA LEU ASP LYS GLN TRP HIS          
SEQRES   4 A   80  VAL SER CYS PHE LYS CYS GLN THR CYS SER VAL ILE LEU          
SEQRES   5 A   80  THR GLY GLU TYR ILE SER LYS ASP GLY VAL PRO TYR CYS          
SEQRES   6 A   80  GLU SER ASP TYR HIS ALA GLN PHE GLY SER GLY PRO SER          
SEQRES   7 A   80  SER GLY                                                      
HET     ZN  A 201       1                                                       
HET     ZN  A 401       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 SER A   67  PHE A   73  1                                   7    
SHEET    1   A 2 LEU A  31  ALA A  33  0                                        
SHEET    2   A 2 LYS A  36  TRP A  38 -1  O  TRP A  38   N  LEU A  31           
SHEET    1   B 2 ILE A  57  LYS A  59  0                                        
SHEET    2   B 2 VAL A  62  TYR A  64 -1  O  TYR A  64   N  ILE A  57           
LINK         SG  CYS A  18                ZN    ZN A 201     1555   1555  2.39  
LINK         SG  CYS A  21                ZN    ZN A 201     1555   1555  2.23  
LINK         ND1 HIS A  39                ZN    ZN A 201     1555   1555  2.08  
LINK         SG  CYS A  42                ZN    ZN A 201     1555   1555  2.25  
LINK         SG  CYS A  45                ZN    ZN A 401     1555   1555  2.39  
LINK         SG  CYS A  48                ZN    ZN A 401     1555   1555  2.39  
LINK         SG  CYS A  65                ZN    ZN A 401     1555   1555  2.18  
LINK         OD1 ASP A  68                ZN    ZN A 401     1555   1555  3.78  
LINK         OD2 ASP A  68                ZN    ZN A 401     1555   1555  1.90  
SITE     1 AC1  4 CYS A  18  CYS A  21  HIS A  39  CYS A  42                    
SITE     1 AC2  4 CYS A  45  CYS A  48  CYS A  65  ASP A  68                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000