PDB Short entry for 2DK6 HEADER SIGNALING PROTEIN 06-APR-06 2DK6 TITLE SOLUTION STRUCTURE OF WWE DOMAIN IN POLY (ADP-RIBOSE) POLYMERASE TITLE 2 FAMILY, MEMBER 11 (PARP 11) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARP11 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WWE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP11; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050912-01; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, WWE DOMAIN, PARP11, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DK6 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DK6 1 VERSN REVDAT 1 24-APR-07 2DK6 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF WWE DOMAIN IN POLY (ADP-RIBOSE) JRNL TITL 2 POLYMERASE FAMILY, MEMBER 11 (PARP 11) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DK6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025511. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 13 38.89 33.96 REMARK 500 1 ASP A 17 86.50 -59.12 REMARK 500 1 CYS A 42 136.09 -34.42 REMARK 500 1 SER A 46 -19.28 -49.20 REMARK 500 1 LYS A 51 -39.02 -38.86 REMARK 500 1 PHE A 53 -32.86 -38.22 REMARK 500 1 LYS A 91 144.50 -171.62 REMARK 500 1 SER A 100 93.26 -44.57 REMARK 500 2 SER A 2 -59.28 -121.75 REMARK 500 2 THR A 15 41.86 37.58 REMARK 500 2 SER A 16 78.87 -105.20 REMARK 500 2 ASP A 17 102.95 -43.13 REMARK 500 2 CYS A 42 -177.65 -53.85 REMARK 500 2 SER A 43 -68.20 -106.42 REMARK 500 2 SER A 97 43.25 -100.55 REMARK 500 3 SER A 2 86.16 -66.03 REMARK 500 3 ASP A 14 94.17 -69.09 REMARK 500 3 ASP A 17 113.72 -34.90 REMARK 500 3 THR A 38 157.11 -45.97 REMARK 500 3 CYS A 42 154.52 -38.79 REMARK 500 3 THR A 65 -67.80 -130.26 REMARK 500 3 LYS A 67 35.12 32.64 REMARK 500 3 SER A 96 148.10 -174.02 REMARK 500 3 SER A 101 42.74 35.14 REMARK 500 4 THR A 38 161.83 -44.40 REMARK 500 4 SER A 40 -70.26 -57.71 REMARK 500 4 CYS A 42 117.67 -36.87 REMARK 500 4 LYS A 67 28.93 38.00 REMARK 500 4 PHE A 95 -70.75 -66.28 REMARK 500 4 PRO A 99 -174.46 -69.76 REMARK 500 5 SER A 6 119.61 -36.61 REMARK 500 5 ASN A 8 -51.94 -120.89 REMARK 500 5 ASP A 11 43.91 -102.23 REMARK 500 5 ASP A 17 105.47 -57.52 REMARK 500 5 ASP A 37 -70.19 -47.66 REMARK 500 5 GLN A 41 40.78 36.62 REMARK 500 5 SER A 43 -179.53 -68.48 REMARK 500 5 SER A 46 -38.14 -35.23 REMARK 500 5 SER A 66 99.46 -33.39 REMARK 500 5 LYS A 67 48.73 37.11 REMARK 500 6 SER A 2 112.48 -160.03 REMARK 500 6 SER A 3 42.18 -104.00 REMARK 500 6 ASP A 17 101.97 -40.11 REMARK 500 6 GLN A 35 145.56 -171.98 REMARK 500 6 THR A 38 154.54 -36.62 REMARK 500 6 SER A 40 109.77 -54.92 REMARK 500 6 GLN A 41 51.28 35.03 REMARK 500 6 CYS A 42 168.23 -45.20 REMARK 500 6 THR A 65 133.34 -175.34 REMARK 500 6 SER A 66 55.02 74.99 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED DBREF 2DK6 A 8 96 GB 21411376 AAH31073 15 103 SEQADV 2DK6 GLY A 1 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 2 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 3 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 GLY A 4 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 5 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 6 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 GLY A 7 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 97 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 GLY A 98 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 PRO A 99 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 100 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 SER A 101 GB 21411376 CLONING ARTIFACT SEQADV 2DK6 GLY A 102 GB 21411376 CLONING ARTIFACT SEQRES 1 A 102 GLY SER SER GLY SER SER GLY ASN GLU VAL ASP ASP MET SEQRES 2 A 102 ASP THR SER ASP THR GLN TRP GLY TRP PHE TYR LEU ALA SEQRES 3 A 102 GLU CYS GLY LYS TRP HIS MET PHE GLN PRO ASP THR ASN SEQRES 4 A 102 SER GLN CYS SER VAL SER SER GLU ASP ILE GLU LYS SER SEQRES 5 A 102 PHE LYS THR ASN PRO CYS GLY SER ILE SER PHE THR THR SEQRES 6 A 102 SER LYS PHE SER TYR LYS ILE ASP PHE ALA GLU MET LYS SEQRES 7 A 102 GLN MET ASN LEU THR THR GLY LYS GLN ARG LEU ILE LYS SEQRES 8 A 102 ARG ALA PRO PHE SER SER GLY PRO SER SER GLY HELIX 1 1 SER A 46 THR A 55 1 10 SHEET 1 A 6 HIS A 32 MET A 33 0 SHEET 2 A 6 TRP A 20 TYR A 24 -1 N TYR A 24 O HIS A 32 SHEET 3 A 6 GLN A 87 PRO A 94 -1 O ALA A 93 N GLY A 21 SHEET 4 A 6 LYS A 78 ASN A 81 -1 N GLN A 79 O ARG A 88 SHEET 5 A 6 SER A 69 ASP A 73 -1 N LYS A 71 O MET A 80 SHEET 6 A 6 SER A 60 THR A 64 -1 N THR A 65 O PHE A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000