PDB Short entry for 2DKL HEADER SIGNALING PROTEIN 12-APR-06 2DKL TITLE SOLUTION STRUCTURE OF THE UBA DOMAIN IN THE HUMAN TRINUCLEOTIDE REPEAT TITLE 2 CONTAINING 6C PROTEIN (HTNRC6C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRINUCLEOTIDE REPEAT CONTAINING 6C PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: KIAA1582 PROTEIN, TNRC6C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1582; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051216-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRINUCLEOTIDE REPEAT CONTAINING 6C PROTEIN, TNRC6C, KIAA1582 PROTEIN, KEYWDS 2 UBA DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,T.KIGAWA,M.YONEYAMA,S.KOSHIBA,T.HARADA,S.WATANABE,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DKL 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DKL 1 VERSN REVDAT 1 12-OCT-06 2DKL 0 JRNL AUTH C.ZHAO,T.KIGAWA,M.YONEYAMA,S.KOSHIBA,T.HARADA,S.WATANABE, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE UBA DOMAIN IN THE HUMAN JRNL TITL 2 TRINUCLEOTIDE REPEAT CONTAINING 6C PROTEIN (HTNRC6C) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025525. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9732, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 106.58 -160.30 REMARK 500 1 LYS A 14 144.57 -37.74 REMARK 500 1 THR A 71 40.40 35.14 REMARK 500 1 ALA A 77 111.73 -170.20 REMARK 500 1 ALA A 78 104.57 -59.53 REMARK 500 2 VAL A 63 86.49 -68.75 REMARK 500 2 ASP A 64 108.45 -56.64 REMARK 500 3 MET A 9 102.05 -56.12 REMARK 500 3 LYS A 10 147.39 -172.73 REMARK 500 3 THR A 11 -50.73 -126.05 REMARK 500 3 SER A 12 86.92 -64.55 REMARK 500 3 LYS A 14 164.72 -49.53 REMARK 500 3 ASN A 45 34.18 -85.40 REMARK 500 3 THR A 71 46.12 35.23 REMARK 500 4 LYS A 10 44.81 -82.82 REMARK 500 4 SER A 12 153.61 -36.13 REMARK 500 4 GLU A 58 -33.82 -34.58 REMARK 500 4 LYS A 65 156.76 -39.42 REMARK 500 4 VAL A 70 135.34 -39.92 REMARK 500 5 MET A 31 -72.70 -61.98 REMARK 500 5 ASN A 45 30.26 -90.68 REMARK 500 5 LEU A 56 -61.48 -91.44 REMARK 500 5 LYS A 59 -25.74 -39.91 REMARK 500 6 GLN A 27 -38.30 -38.01 REMARK 500 6 ASN A 45 32.92 -94.91 REMARK 500 6 ASP A 72 104.88 -42.68 REMARK 500 6 ALA A 77 136.36 -174.77 REMARK 500 7 SER A 5 -61.44 -91.45 REMARK 500 7 LYS A 14 51.34 -94.77 REMARK 500 7 THR A 29 -36.79 -39.33 REMARK 500 7 LYS A 43 -39.55 -38.87 REMARK 500 7 ASN A 45 34.66 -86.49 REMARK 500 7 LEU A 49 -61.25 -91.93 REMARK 500 7 LYS A 65 172.09 -50.39 REMARK 500 7 THR A 71 -31.05 -130.35 REMARK 500 7 PRO A 82 -176.36 -69.78 REMARK 500 8 SER A 3 -56.40 -120.11 REMARK 500 8 SER A 5 170.47 -54.71 REMARK 500 8 ASN A 45 30.52 -90.42 REMARK 500 8 ASN A 74 40.20 38.18 REMARK 500 8 ALA A 77 107.86 -161.74 REMARK 500 8 LYS A 79 97.48 -40.92 REMARK 500 9 SER A 2 99.51 -67.17 REMARK 500 9 GLN A 15 -33.55 -131.90 REMARK 500 9 ASN A 74 -55.72 -131.97 REMARK 500 9 ALA A 77 -56.18 -132.48 REMARK 500 10 LYS A 59 34.63 -84.66 REMARK 500 10 LYS A 60 39.40 36.59 REMARK 500 10 ASP A 64 176.58 -49.02 REMARK 500 10 ALA A 77 82.25 -68.53 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101554.5 RELATED DB: TARGETDB DBREF 2DKL A 8 79 UNP Q86UE5 Q86UE5_HUMAN 197 268 SEQADV 2DKL GLY A 1 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 2 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 3 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL GLY A 4 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 5 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 6 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL GLY A 7 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 80 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL GLY A 81 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL PRO A 82 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 83 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL SER A 84 UNP Q86UE5 CLONING ARTIFACT SEQADV 2DKL GLY A 85 UNP Q86UE5 CLONING ARTIFACT SEQRES 1 A 85 GLY SER SER GLY SER SER GLY GLY MET LYS THR SER GLY SEQRES 2 A 85 LYS GLN ASP GLU ALA TRP ILE MET SER ARG LEU ILE LYS SEQRES 3 A 85 GLN LEU THR ASP MET GLY PHE PRO ARG GLU PRO ALA GLU SEQRES 4 A 85 GLU ALA LEU LYS SER ASN ASN MET ASN LEU ASP GLN ALA SEQRES 5 A 85 MET SER ALA LEU LEU GLU LYS LYS VAL ASP VAL ASP LYS SEQRES 6 A 85 ARG GLY LEU GLY VAL THR ASP HIS ASN GLY MET ALA ALA SEQRES 7 A 85 LYS SER GLY PRO SER SER GLY HELIX 1 1 ASP A 16 GLY A 32 1 17 HELIX 2 2 PRO A 34 ASN A 45 1 12 HELIX 3 3 ASN A 48 GLU A 58 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000