PDB Short entry for 2DLH
HEADER    HYDROLASE                               18-APR-06   2DLH              
TITLE     SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN                  
TITLE    2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA;          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: FN3, FIBRONECTIN TYPE-III;                                 
COMPND   5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA;            
COMPND   6 EC: 3.1.3.48;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PTPRD;                                                         
SOURCE   6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P050302-29;                               
SOURCE   9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA, STRUCTURAL           
KEYWDS   2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL             
KEYWDS   3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                            
KEYWDS   4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL             
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   2   24-FEB-09 2DLH    1       VERSN                                    
REVDAT   1   18-OCT-06 2DLH    0                                                
JRNL        AUTH   K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA                     
JRNL        TITL   SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF               
JRNL        TITL 2 HUMAN RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE             
JRNL        TITL 3 DELTA                                                        
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.1                                            
REMARK   3   AUTHORS     : GUNTERT, P.                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06.                  
REMARK 100 THE RCSB ID CODE IS RCSB025554.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.33MM 13C, 15N-LABELED            
REMARK 210                                   PROTEIN; 20MM D-TRIS-              
REMARK 210                                   HCL(PH7.0); 100MM NACL; 1MM D-     
REMARK 210                                   DTT; 0.02% NAN3; 90% H2O, 10%      
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ, 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1C, NMRPIPE 20031121,       
REMARK 210                                   NMRVIEW 5.0.4, KUJIRA 0.9742,      
REMARK 210                                   CYANA 2.1                          
REMARK 210   METHOD USED                   : NULL                               
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES        
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   5       76.92   -108.64                                   
REMARK 500  1 VAL A   9       74.91     59.26                                   
REMARK 500  1 THR A  13       80.33   -157.04                                   
REMARK 500  1 THR A  33       32.54   -141.87                                   
REMARK 500  1 ASP A  59       75.80   -113.11                                   
REMARK 500  1 LYS A  69      159.37     63.68                                   
REMARK 500  2 SER A   2      178.80     59.96                                   
REMARK 500  2 SER A   5      -53.32   -154.18                                   
REMARK 500  2 SER A   6       87.91     56.06                                   
REMARK 500  2 GLN A  12       31.25   -143.75                                   
REMARK 500  2 THR A  33       33.36   -143.05                                   
REMARK 500  2 ASP A  59       76.03   -113.02                                   
REMARK 500  2 LYS A  69      159.79     63.62                                   
REMARK 500  2 PRO A 118       92.38    -69.78                                   
REMARK 500  2 SER A 120      174.84     61.39                                   
REMARK 500  3 SER A   6     -172.19     54.35                                   
REMARK 500  3 SER A  14      174.29     59.89                                   
REMARK 500  3 THR A  33       32.10   -142.33                                   
REMARK 500  3 ASP A  59       75.51   -114.08                                   
REMARK 500  3 TRP A  67      173.90    -53.47                                   
REMARK 500  3 LYS A  69      162.85     63.74                                   
REMARK 500  3 SER A 120      167.81     62.56                                   
REMARK 500  4 SER A   2       90.13   -161.58                                   
REMARK 500  4 SER A   5       89.19   -166.85                                   
REMARK 500  4 VAL A   9       99.79     60.90                                   
REMARK 500  4 THR A  13      -70.62    -72.79                                   
REMARK 500  4 SER A  14      177.83     58.89                                   
REMARK 500  4 THR A  33       35.96   -144.62                                   
REMARK 500  4 ASP A  59       78.03   -112.26                                   
REMARK 500  4 TRP A  67      175.60    -54.09                                   
REMARK 500  4 LYS A  69      138.65     66.65                                   
REMARK 500  4 SER A 119       91.66     60.55                                   
REMARK 500  5 SER A   2      -50.89   -151.17                                   
REMARK 500  5 THR A  13      -70.44    -90.47                                   
REMARK 500  5 SER A  31     -167.25   -123.48                                   
REMARK 500  5 THR A  33       28.78   -155.39                                   
REMARK 500  5 ASP A  59       76.93   -112.63                                   
REMARK 500  5 LYS A  69      162.28     62.96                                   
REMARK 500  5 SER A 120     -179.11     62.55                                   
REMARK 500  6 SER A   2      169.69     61.88                                   
REMARK 500  6 SER A   3      -49.36   -144.58                                   
REMARK 500  6 SER A   6      -73.46    -76.00                                   
REMARK 500  6 VAL A   9       22.41   -154.63                                   
REMARK 500  6 LEU A  10       95.56     58.75                                   
REMARK 500  6 GLN A  12      173.10    -57.43                                   
REMARK 500  6 SER A  14      113.60     64.91                                   
REMARK 500  6 SER A  31     -167.05   -123.89                                   
REMARK 500  6 THR A  33       28.90   -155.21                                   
REMARK 500  6 ASP A  59       76.97   -112.81                                   
REMARK 500  6 TRP A  67      171.11    -52.47                                   
REMARK 500  6 LYS A  69      159.84     63.65                                   
REMARK 500  6 ALA A  73       61.53   -117.15                                   
REMARK 500  6 THR A 112       91.71    -69.16                                   
REMARK 500  6 THR A 114       43.49   -100.67                                   
REMARK 500  6 SER A 116      174.35     60.09                                   
REMARK 500  6 PRO A 118     -176.54    -69.65                                   
REMARK 500  6 SER A 119     -176.67     59.99                                   
REMARK 500  7 SER A   2      -70.52   -152.63                                   
REMARK 500  7 SER A  14      169.02     62.60                                   
REMARK 500  7 THR A  33       35.17   -144.33                                   
REMARK 500  7 ASP A  59       75.76   -113.14                                   
REMARK 500  7 TRP A  67      170.92    -52.28                                   
REMARK 500  7 LYS A  69      162.09     62.92                                   
REMARK 500  7 GLN A 113       14.45   -143.42                                   
REMARK 500  7 THR A 114       43.79     37.10                                   
REMARK 500  7 SER A 116       94.63     57.62                                   
REMARK 500  7 SER A 119       79.52   -104.20                                   
REMARK 500  7 SER A 120     -174.16     56.42                                   
REMARK 500  8 SER A   3       75.40   -119.71                                   
REMARK 500  8 SER A   5     -171.04     54.19                                   
REMARK 500  8 SER A   6      -63.35   -140.08                                   
REMARK 500  8 THR A  13      178.03     60.37                                   
REMARK 500  8 THR A  33       29.10   -143.54                                   
REMARK 500  8 ASP A  59       78.17   -112.24                                   
REMARK 500  8 TRP A  67     -174.17    -58.69                                   
REMARK 500  8 SER A 116     -173.90     60.38                                   
REMARK 500  8 SER A 119      132.77   -172.85                                   
REMARK 500  9 SER A   5       91.55     56.57                                   
REMARK 500  9 THR A  11      -63.93   -142.99                                   
REMARK 500  9 GLN A  12      109.31   -167.16                                   
REMARK 500  9 THR A  33       33.81   -142.82                                   
REMARK 500  9 HIS A  63      -84.29    -60.71                                   
REMARK 500  9 VAL A  64      -71.35   -154.45                                   
REMARK 500  9 TRP A  67     -175.18    -61.28                                   
REMARK 500  9 LYS A  69      161.38     63.78                                   
REMARK 500 10 SER A   3      129.99   -172.67                                   
REMARK 500 10 THR A  33       33.54   -143.16                                   
REMARK 500 10 ASP A  59       79.86   -111.64                                   
REMARK 500 10 HIS A  63      -84.04    -60.33                                   
REMARK 500 10 VAL A  64      -71.20   -154.53                                   
REMARK 500 10 TRP A  67     -175.21    -60.55                                   
REMARK 500 10 LYS A  69      158.73     64.07                                   
REMARK 500 11 SER A   3      138.97   -174.65                                   
REMARK 500 11 THR A  13      -60.28   -144.69                                   
REMARK 500 11 THR A  33       35.56   -144.67                                   
REMARK 500 11 HIS A  63      -84.14    -61.00                                   
REMARK 500 11 VAL A  64      -71.25   -154.18                                   
REMARK 500 11 TRP A  67     -175.16    -60.49                                   
REMARK 500 11 LYS A  69      158.56     64.05                                   
REMARK 500 11 LEU A 104      171.47    -55.84                                   
REMARK 500 12 SER A   3     -172.99     62.73                                   
REMARK 500 12 SER A   5      101.97     62.90                                   
REMARK 500 12 PRO A   8       97.97    -69.78                                   
REMARK 500 12 GLN A  12      -58.93   -129.13                                   
REMARK 500 12 ASP A  59       76.28   -113.03                                   
REMARK 500 12 TRP A  67      175.21    -54.11                                   
REMARK 500 12 LYS A  69      137.82     66.55                                   
REMARK 500 12 ALA A  73       67.18   -118.55                                   
REMARK 500 12 SER A 119       80.71     53.74                                   
REMARK 500 13 SER A   3      -75.89     69.17                                   
REMARK 500 13 SER A   5     -172.71     59.62                                   
REMARK 500 13 SER A   6      124.80   -174.96                                   
REMARK 500 13 PRO A   8       95.03    -69.83                                   
REMARK 500 13 LEU A  10       52.08   -117.70                                   
REMARK 500 13 SER A  14      149.77   -170.48                                   
REMARK 500 13 THR A  33       31.78   -143.65                                   
REMARK 500 13 HIS A  63      -84.16    -60.71                                   
REMARK 500 13 VAL A  64      -71.14   -154.17                                   
REMARK 500 13 TRP A  67     -175.39    -61.18                                   
REMARK 500 13 LYS A  69      156.02     64.66                                   
REMARK 500 13 SER A 116       98.06     60.72                                   
REMARK 500 14 SER A  31     -168.24   -129.05                                   
REMARK 500 14 THR A  33       33.14   -154.69                                   
REMARK 500 14 GLU A  44       74.18   -166.85                                   
REMARK 500 14 ASP A  59       77.46   -112.54                                   
REMARK 500 14 TRP A  67      173.64    -54.09                                   
REMARK 500 14 LYS A  69      154.42     64.72                                   
REMARK 500 14 ASP A 107      107.35    -52.33                                   
REMARK 500 14 GLN A 113       33.94   -151.24                                   
REMARK 500 14 PRO A 118     -171.01    -69.71                                   
REMARK 500 14 SER A 120       88.33     57.87                                   
REMARK 500 15 SER A   3      -48.44   -153.84                                   
REMARK 500 15 SER A   5      -57.00   -164.91                                   
REMARK 500 15 SER A   6     -176.97     59.15                                   
REMARK 500 15 LEU A  10      171.62     62.17                                   
REMARK 500 15 SER A  14      164.22     62.79                                   
REMARK 500 15 THR A  33       39.05   -151.00                                   
REMARK 500 15 ASP A  59       77.11   -112.78                                   
REMARK 500 15 TRP A  67      176.80    -55.64                                   
REMARK 500 15 LYS A  69      157.57     64.19                                   
REMARK 500 15 LEU A  83     -169.85   -105.07                                   
REMARK 500 15 ASP A 107      106.33    -51.88                                   
REMARK 500 15 SER A 116       51.90   -166.83                                   
REMARK 500 16 SER A   3      108.49    -57.12                                   
REMARK 500 16 THR A  13      -58.12   -159.90                                   
REMARK 500 16 SER A  31     -168.20   -129.86                                   
REMARK 500 16 THR A  33       37.54   -148.87                                   
REMARK 500 16 GLU A  44       72.18   -175.79                                   
REMARK 500 16 ASP A  59       77.50   -112.54                                   
REMARK 500 16 TRP A  67      170.88    -52.45                                   
REMARK 500 16 LYS A  69      156.30     64.41                                   
REMARK 500 16 ASP A 107      109.12    -51.91                                   
REMARK 500 16 GLN A 113       30.17   -150.35                                   
REMARK 500 16 SER A 116       49.64   -154.84                                   
REMARK 500 17 SER A   2      -70.49   -115.08                                   
REMARK 500 17 SER A   3     -176.15     59.33                                   
REMARK 500 17 SER A   5      137.42   -175.60                                   
REMARK 500 17 SER A   6     -179.30     60.96                                   
REMARK 500 17 PRO A   8       85.06    -69.78                                   
REMARK 500 17 THR A  13      -58.49   -159.53                                   
REMARK 500 17 SER A  31     -168.32   -127.98                                   
REMARK 500 17 THR A  33       22.24   -141.41                                   
REMARK 500 17 ASP A  59       76.36   -112.96                                   
REMARK 500 17 TRP A  67      171.84    -53.06                                   
REMARK 500 17 LYS A  69      158.54     64.09                                   
REMARK 500 18 SER A   2       83.06     56.26                                   
REMARK 500 18 SER A   5     -172.10     56.61                                   
REMARK 500 18 SER A   6     -178.67     57.12                                   
REMARK 500 18 PRO A   8       85.21    -69.69                                   
REMARK 500 18 SER A  14      165.41     62.68                                   
REMARK 500 18 SER A  31     -167.24   -123.55                                   
REMARK 500 18 THR A  33       29.79   -151.68                                   
REMARK 500 18 HIS A  63      -84.35    -60.99                                   
REMARK 500 18 VAL A  64      -70.88   -154.16                                   
REMARK 500 18 TRP A  67     -175.13    -60.76                                   
REMARK 500 18 LYS A  69      158.34     64.13                                   
REMARK 500 18 ASP A 107      107.60    -53.20                                   
REMARK 500 18 THR A 112       91.22    -65.13                                   
REMARK 500 18 PRO A 118       80.60    -69.81                                   
REMARK 500 18 SER A 120      -62.42   -156.95                                   
REMARK 500 19 SER A   3     -179.83     60.22                                   
REMARK 500 19 LEU A  10       95.27     61.66                                   
REMARK 500 19 GLN A  12     -172.27     55.49                                   
REMARK 500 19 PRO A  22     -178.20    -69.76                                   
REMARK 500 19 SER A  31     -165.18   -124.66                                   
REMARK 500 19 THR A  33       29.61   -156.52                                   
REMARK 500 19 ASP A  59       76.47   -112.89                                   
REMARK 500 19 TRP A  67      178.50    -55.88                                   
REMARK 500 19 LYS A  69      156.10     64.10                                   
REMARK 500 19 GLN A 113       81.47   -157.68                                   
REMARK 500 20 PRO A   8     -175.32    -69.88                                   
REMARK 500 20 LEU A  10      142.83   -178.61                                   
REMARK 500 20 GLN A  12       51.69   -176.54                                   
REMARK 500 20 THR A  13      -73.59    -83.65                                   
REMARK 500 20 SER A  14      167.92     61.55                                   
REMARK 500 20 THR A  33       38.65   -151.94                                   
REMARK 500 20 ASP A  59       77.00   -112.55                                   
REMARK 500 20 LYS A  69      159.46     63.72                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSO002001101.2   RELATED DB: TARGETDB                    
DBREF  2DLH A    8   115  UNP    P23468   PTPRD_HUMAN    405    514             
SEQADV 2DLH GLY A    1  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A    2  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A    3  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH GLY A    4  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A    5  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A    6  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH GLY A    7  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A  116  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH GLY A  117  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH PRO A  118  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A  119  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH SER A  120  UNP  P23468              CLONING ARTIFACT               
SEQADV 2DLH GLY A  121  UNP  P23468              CLONING ARTIFACT               
SEQRES   1 A  121  GLY SER SER GLY SER SER GLY PRO VAL LEU THR GLN THR          
SEQRES   2 A  121  SER GLU GLN ALA PRO SER SER ALA PRO ARG ASP VAL GLN          
SEQRES   3 A  121  ALA ARG MET LEU SER SER THR THR ILE LEU VAL GLN TRP          
SEQRES   4 A  121  LYS GLU PRO GLU GLU PRO ASN GLY GLN ILE GLN GLY TYR          
SEQRES   5 A  121  ARG VAL TYR TYR THR MET ASP PRO THR GLN HIS VAL ASN          
SEQRES   6 A  121  ASN TRP MET LYS HIS ASN VAL ALA ASP SER GLN ILE THR          
SEQRES   7 A  121  THR ILE GLY ASN LEU VAL PRO GLN LYS THR TYR SER VAL          
SEQRES   8 A  121  LYS VAL LEU ALA PHE THR SER ILE GLY ASP GLY PRO LEU          
SEQRES   9 A  121  SER SER ASP ILE GLN VAL ILE THR GLN THR GLY SER GLY          
SEQRES  10 A  121  PRO SER SER GLY                                              
SHEET    1   A 3 ARG A  23  ALA A  27  0                                        
SHEET    2   A 3 VAL A  37  LYS A  40 -1  O  LYS A  40   N  ARG A  23           
SHEET    3   A 3 ILE A  77  THR A  78 -1  O  THR A  78   N  VAL A  37           
SHEET    1   B 3 ILE A  49  TYR A  55  0                                        
SHEET    2   B 3 THR A  88  THR A  97 -1  O  LYS A  92   N  TYR A  55           
SHEET    3   B 3 ILE A 108  ILE A 111 -1  O  VAL A 110   N  TYR A  89           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000