PDB Short entry for 2DM2 HEADER PROTEIN BINDING 20-APR-06 2DM2 TITLE SOLUTION STRUCTURE OF THE FIRST IG DOMAIN OF HUMAN PALLADIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALLADIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0992; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050711-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, KIAA0992, MYOPALLADIN, ACTIN-ASSOCIATED KEYWDS 2 SCAFFOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 5 BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2DM2 1 VERSN REVDAT 1 24-APR-07 2DM2 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST IG DOMAIN OF HUMAN JRNL TITL 2 PALLADIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DM2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE RCSB ID CODE IS RCSB025573. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.76MM UNIFORMLY 13C AND 15N REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% REMARK 210 NAN3, 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20020425, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9318, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, TRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 37 97.90 -34.96 REMARK 500 1 ASP A 45 48.85 34.62 REMARK 500 1 LYS A 52 34.97 -92.11 REMARK 500 1 ASP A 78 163.04 -47.55 REMARK 500 1 PRO A 88 4.57 -69.76 REMARK 500 1 SER A 109 96.30 -48.55 REMARK 500 2 LYS A 14 154.14 -46.22 REMARK 500 2 LYS A 37 99.44 -32.21 REMARK 500 2 ASP A 63 32.21 -98.99 REMARK 500 2 PRO A 88 4.33 -69.72 REMARK 500 2 SER A 109 112.12 -174.92 REMARK 500 3 SER A 2 41.91 -93.33 REMARK 500 3 MET A 13 69.98 -119.78 REMARK 500 3 LYS A 14 134.51 -39.56 REMARK 500 3 GLU A 22 125.77 -39.52 REMARK 500 3 LYS A 37 106.52 -35.13 REMARK 500 3 ASP A 45 30.07 39.87 REMARK 500 3 LYS A 52 35.00 -83.29 REMARK 500 3 PRO A 88 4.09 -69.75 REMARK 500 4 LYS A 14 156.93 -47.85 REMARK 500 4 SER A 53 142.09 -36.20 REMARK 500 4 ASP A 78 158.58 -39.73 REMARK 500 4 PRO A 88 4.92 -69.73 REMARK 500 5 LYS A 37 107.48 -40.15 REMARK 500 5 ASP A 45 35.06 35.42 REMARK 500 5 PRO A 88 2.44 -69.79 REMARK 500 6 LYS A 37 99.64 -35.38 REMARK 500 6 SER A 53 97.33 -57.94 REMARK 500 6 ASP A 54 -38.45 -36.48 REMARK 500 6 ASP A 78 160.87 -44.77 REMARK 500 6 PRO A 88 4.42 -69.76 REMARK 500 6 SER A 105 139.23 -170.53 REMARK 500 7 SER A 3 57.46 -95.22 REMARK 500 7 PRO A 36 -171.06 -69.79 REMARK 500 7 LYS A 37 108.01 -53.53 REMARK 500 7 ASP A 45 29.33 37.09 REMARK 500 7 LYS A 52 34.06 -84.30 REMARK 500 7 ASP A 54 -33.02 -34.52 REMARK 500 7 PRO A 88 4.54 -69.72 REMARK 500 7 SER A 109 42.48 37.30 REMARK 500 8 SER A 2 112.17 -174.04 REMARK 500 8 PRO A 36 -177.51 -69.81 REMARK 500 8 LYS A 37 109.65 -46.11 REMARK 500 8 ASP A 45 28.63 37.37 REMARK 500 8 LYS A 52 37.72 -97.08 REMARK 500 8 SER A 53 -174.32 -55.30 REMARK 500 8 PRO A 88 3.56 -69.75 REMARK 500 9 LYS A 14 164.40 -46.37 REMARK 500 9 LYS A 37 111.53 -32.31 REMARK 500 9 LYS A 52 39.55 -90.08 REMARK 500 9 PRO A 88 5.41 -69.85 REMARK 500 9 ASN A 104 75.03 -107.94 REMARK 500 9 SER A 108 -50.00 -126.73 REMARK 500 10 LYS A 14 152.86 -44.00 REMARK 500 10 LEU A 15 101.71 -56.47 REMARK 500 10 LYS A 37 122.61 -39.71 REMARK 500 10 ASP A 45 27.77 41.07 REMARK 500 10 SER A 53 94.63 -38.80 REMARK 500 10 PRO A 88 4.95 -69.76 REMARK 500 10 ALA A 102 107.71 -55.62 REMARK 500 10 PRO A 107 1.47 -69.74 REMARK 500 11 LYS A 14 164.03 -43.08 REMARK 500 11 PRO A 36 -175.53 -69.76 REMARK 500 11 ASP A 45 31.10 38.07 REMARK 500 11 LYS A 52 31.34 -90.80 REMARK 500 11 ASP A 78 155.87 -45.62 REMARK 500 11 PRO A 88 4.86 -69.80 REMARK 500 12 LYS A 14 156.77 -45.70 REMARK 500 12 PRO A 36 -176.18 -69.74 REMARK 500 12 LYS A 37 109.67 -53.90 REMARK 500 12 SER A 53 128.00 -36.37 REMARK 500 12 PRO A 88 4.34 -69.67 REMARK 500 13 LYS A 14 154.76 -49.79 REMARK 500 13 LYS A 37 103.29 -42.91 REMARK 500 13 SER A 53 96.86 -67.21 REMARK 500 13 PRO A 88 6.17 -69.76 REMARK 500 14 LYS A 14 170.65 -48.99 REMARK 500 14 HIS A 55 -70.06 -44.43 REMARK 500 14 ASP A 63 33.89 -84.27 REMARK 500 14 LEU A 75 -37.45 -35.39 REMARK 500 14 ASP A 77 -28.86 -37.46 REMARK 500 14 PRO A 88 4.02 -69.76 REMARK 500 15 SER A 2 93.23 -58.12 REMARK 500 15 LYS A 37 136.64 -34.07 REMARK 500 15 ASP A 45 28.84 43.34 REMARK 500 15 HIS A 55 -71.78 -101.72 REMARK 500 15 LEU A 75 -38.43 -34.28 REMARK 500 15 PRO A 88 4.87 -69.75 REMARK 500 15 SER A 109 -60.46 -127.43 REMARK 500 16 ASP A 45 49.11 34.55 REMARK 500 16 LYS A 52 39.48 -86.84 REMARK 500 16 LEU A 75 -35.34 -37.30 REMARK 500 16 ASP A 78 149.66 -38.37 REMARK 500 16 PRO A 88 4.54 -69.77 REMARK 500 16 SER A 105 116.31 -171.59 REMARK 500 17 GLU A 22 128.41 -35.38 REMARK 500 17 PRO A 36 -174.61 -69.78 REMARK 500 17 ASP A 78 165.69 -46.40 REMARK 500 17 PRO A 88 5.08 -69.79 REMARK 500 17 PRO A 107 1.74 -69.80 REMARK 500 18 SER A 3 44.78 -90.53 REMARK 500 18 LYS A 14 161.06 -48.46 REMARK 500 18 ASP A 45 25.71 47.04 REMARK 500 18 PRO A 88 4.20 -69.83 REMARK 500 19 ASP A 45 40.98 37.95 REMARK 500 19 LYS A 52 33.78 -89.85 REMARK 500 19 PRO A 88 4.75 -69.76 REMARK 500 19 VAL A 103 51.76 -114.96 REMARK 500 19 SER A 105 -41.05 -131.41 REMARK 500 20 LEU A 15 119.37 -34.93 REMARK 500 20 LEU A 75 -37.49 -39.07 REMARK 500 20 PRO A 88 4.70 -69.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 2DM2 A 8 104 GB 21361585 NP_057165 776 872 SEQADV 2DM2 GLY A 1 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 2 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 3 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 GLY A 4 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 5 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 6 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 GLY A 7 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 105 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 GLY A 106 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 PRO A 107 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 108 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 SER A 109 GB 21361585 CLONING ARTIFACT SEQADV 2DM2 GLY A 110 GB 21361585 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY ALA PRO PHE PHE GLU MET SEQRES 2 A 110 LYS LEU LYS HIS TYR LYS ILE PHE GLU GLY MET PRO VAL SEQRES 3 A 110 THR PHE THR CYS ARG VAL ALA GLY ASN PRO LYS PRO LYS SEQRES 4 A 110 ILE TYR TRP PHE LYS ASP GLY LYS GLN ILE SER PRO LYS SEQRES 5 A 110 SER ASP HIS TYR THR ILE GLN ARG ASP LEU ASP GLY THR SEQRES 6 A 110 CYS SER LEU HIS THR THR ALA SER THR LEU ASP ASP ASP SEQRES 7 A 110 GLY ASN TYR THR ILE MET ALA ALA ASN PRO GLN GLY ARG SEQRES 8 A 110 ILE SER CYS THR GLY ARG LEU MET VAL GLN ALA VAL ASN SEQRES 9 A 110 SER GLY PRO SER SER GLY SHEET 1 A 2 TYR A 18 PHE A 21 0 SHEET 2 A 2 LEU A 98 GLN A 101 1 O MET A 99 N ILE A 20 SHEET 1 B 3 VAL A 26 ARG A 31 0 SHEET 2 B 3 THR A 65 THR A 70 -1 O LEU A 68 N PHE A 28 SHEET 3 B 3 TYR A 56 ARG A 60 -1 N THR A 57 O HIS A 69 SHEET 1 C 3 LYS A 39 PHE A 43 0 SHEET 2 C 3 THR A 82 ALA A 86 -1 O THR A 82 N PHE A 43 SHEET 3 C 3 ILE A 92 CYS A 94 -1 O CYS A 94 N ILE A 83 CISPEP 1 ASN A 35 PRO A 36 1 -0.03 CISPEP 2 ASN A 35 PRO A 36 2 -0.07 CISPEP 3 ASN A 35 PRO A 36 3 -0.08 CISPEP 4 ASN A 35 PRO A 36 4 0.00 CISPEP 5 ASN A 35 PRO A 36 5 -0.04 CISPEP 6 ASN A 35 PRO A 36 6 -0.06 CISPEP 7 ASN A 35 PRO A 36 7 -0.07 CISPEP 8 ASN A 35 PRO A 36 8 -0.01 CISPEP 9 ASN A 35 PRO A 36 9 -0.02 CISPEP 10 ASN A 35 PRO A 36 10 -0.06 CISPEP 11 ASN A 35 PRO A 36 11 -0.04 CISPEP 12 ASN A 35 PRO A 36 12 -0.10 CISPEP 13 ASN A 35 PRO A 36 13 -0.02 CISPEP 14 ASN A 35 PRO A 36 14 -0.06 CISPEP 15 ASN A 35 PRO A 36 15 -0.02 CISPEP 16 ASN A 35 PRO A 36 16 -0.07 CISPEP 17 ASN A 35 PRO A 36 17 -0.03 CISPEP 18 ASN A 35 PRO A 36 18 -0.03 CISPEP 19 ASN A 35 PRO A 36 19 -0.04 CISPEP 20 ASN A 35 PRO A 36 20 -0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000