PDB Short entry for 2DM4
HEADER    LIPID TRANSPORT                         20-APR-06   2DM4              
TITLE     SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN SORLA/LR11       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SORTILIN-RELATED RECEPTOR;                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: FN3;                                                       
COMPND   5 SYNONYM: SORTING PROTEIN-RELATED RECEPTOR CONTAINING LDLR CLASS A    
COMPND   6 REPEATS, SORLA, SORLA-1, LOW-DENSITY LIPOPROTEIN RECEPTOR RELATIVE   
COMPND   7 WITH 11 LIGAND-BINDING REPEATS, LDLR RELATIVE WITH 11 LIGAND-BINDING 
COMPND   8 REPEATS, LR11;                                                       
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: SORL1;                                                         
SOURCE   6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P050719-16;                               
SOURCE   9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    BETA-SANDWICH, SORTING PROTEIN-RELATED RECEPTOR CONTAINING LDLR CLASS 
KEYWDS   2 A REPEATS, SORLA, LOW-DENSITY LIPOPROTEIN RECEPTOR RELATIVE WITH 11  
KEYWDS   3 LIGAND-BINDING REPEATS, LR11, ALZHEIMER'S DISEASE, APP, BACE1,       
KEYWDS   4 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL  
KEYWDS   5 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS        
KEYWDS   6 INITIATIVE, RSGI, LIPID TRANSPORT                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    T.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN           
AUTHOR   2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)                     
REVDAT   3   09-MAR-22 2DM4    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2DM4    1       VERSN                                    
REVDAT   1   20-OCT-06 2DM4    0                                                
JRNL        AUTH   T.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA        
JRNL        TITL   SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN         
JRNL        TITL 2 SORLA/LR11                                                   
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : DELTA NMR 4.3.2, CYANA 2.0.17                        
REMARK   3   AUTHORS     : JEOL (DELTA NMR), GUNTERT, P. (CYANA)                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DM4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000025575.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.18MM UNIFORMLY 13C AND 15N       
REMARK 210                                   LABELED PROTEIN; 20MM TRISHCL,     
REMARK 210                                   100MM NACL, 1MM DTT, 0.02% NAN3;   
REMARK 210                                   10% D2O, 90% H2O                   
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : ECA                                
REMARK 210  SPECTROMETER MANUFACTURER      : JEOL                               
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20020425, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.9318, CYANA 2.0.17        
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES WITH   
REMARK 210                                   THE LOWEST ENERGY                  
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   3      158.09    -44.21                                   
REMARK 500  1 GLU A  42     -178.13   -170.55                                   
REMARK 500  1 SER A  50      -33.56    -36.43                                   
REMARK 500  1 SER A  52      127.69   -174.74                                   
REMARK 500  1 LYS A  53       38.36    -87.25                                   
REMARK 500  1 SER A  85      -37.88    -34.37                                   
REMARK 500  1 ASN A  90      155.29    -49.03                                   
REMARK 500  1 ASP A  93       93.41    -53.34                                   
REMARK 500  1 LYS A 101       74.56   -103.92                                   
REMARK 500  1 SER A 103       44.19   -105.91                                   
REMARK 500  2 HIS A  37       46.24   -100.94                                   
REMARK 500  2 LEU A  39      130.58    -39.64                                   
REMARK 500  2 SER A  50       93.09    -47.75                                   
REMARK 500  2 ASN A  90      157.98    -47.10                                   
REMARK 500  2 ASP A  93       91.88    -53.16                                   
REMARK 500  2 THR A  99      178.24    -58.00                                   
REMARK 500  2 SER A 107      121.73   -174.89                                   
REMARK 500  3 HIS A  37       36.07    -86.04                                   
REMARK 500  3 SER A  50      118.71    -38.71                                   
REMARK 500  3 ASN A  63       44.85    -83.15                                   
REMARK 500  3 ASP A  93       90.74    -61.41                                   
REMARK 500  4 PRO A  11     -176.65    -69.75                                   
REMARK 500  4 TRP A  30     -176.48   -173.97                                   
REMARK 500  4 SER A  50       94.03    -41.01                                   
REMARK 500  4 ASN A  63       40.38    -85.47                                   
REMARK 500  4 SER A  92      173.34    -58.26                                   
REMARK 500  4 SER A  94      135.46    -35.59                                   
REMARK 500  4 THR A  99      161.32    -48.37                                   
REMARK 500  5 PRO A  11     -178.79    -69.75                                   
REMARK 500  5 LEU A  39      126.03    -35.46                                   
REMARK 500  5 SER A  50       87.44    -51.53                                   
REMARK 500  5 SER A  85      -36.35    -38.83                                   
REMARK 500  5 ASP A  93       94.16    -40.40                                   
REMARK 500  6 SER A   3      174.39    -53.90                                   
REMARK 500  6 SER A   5       41.96   -101.52                                   
REMARK 500  6 PRO A  11     -176.94    -69.76                                   
REMARK 500  6 SER A  50       94.76    -39.50                                   
REMARK 500  6 ASN A  63       46.48    -82.10                                   
REMARK 500  6 ASP A  93       97.65    -36.67                                   
REMARK 500  6 SER A  94      145.77    -37.87                                   
REMARK 500  6 PRO A 105       97.62    -69.77                                   
REMARK 500  7 TRP A  30     -176.26   -171.64                                   
REMARK 500  7 HIS A  37       42.61    -93.71                                   
REMARK 500  7 SER A  50       97.44    -39.72                                   
REMARK 500  7 SER A  52      147.94   -170.44                                   
REMARK 500  7 ASN A  63       42.02    -81.57                                   
REMARK 500  7 ASP A  93       97.37    -48.10                                   
REMARK 500  7 THR A  99      173.27    -55.77                                   
REMARK 500  8 ASP A   9       34.38     33.09                                   
REMARK 500  8 ILE A  34      -33.31    -33.80                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     143 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSK003001406.1   RELATED DB: TARGETDB                    
DBREF  2DM4 A    8   102  UNP    Q92673   SORL_HUMAN    1651   1745             
SEQADV 2DM4 GLY A    1  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A    2  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A    3  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 GLY A    4  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A    5  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A    6  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 GLY A    7  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A  103  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 GLY A  104  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 PRO A  105  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A  106  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 SER A  107  UNP  Q92673              CLONING ARTIFACT               
SEQADV 2DM4 GLY A  108  UNP  Q92673              CLONING ARTIFACT               
SEQRES   1 A  108  GLY SER SER GLY SER SER GLY PRO ASP ALA PRO ARG ASN          
SEQRES   2 A  108  LEU GLN LEU SER LEU PRO ARG GLU ALA GLU GLY VAL ILE          
SEQRES   3 A  108  VAL GLY HIS TRP ALA PRO PRO ILE HIS THR HIS GLY LEU          
SEQRES   4 A  108  ILE ARG GLU TYR ILE VAL GLU TYR SER ARG SER GLY SER          
SEQRES   5 A  108  LYS MET TRP ALA SER GLN ARG ALA ALA SER ASN PHE THR          
SEQRES   6 A  108  GLU ILE LYS ASN LEU LEU VAL ASN THR LEU TYR THR VAL          
SEQRES   7 A  108  ARG VAL ALA ALA VAL THR SER ARG GLY ILE GLY ASN TRP          
SEQRES   8 A  108  SER ASP SER LYS SER ILE THR THR ILE LYS GLY SER GLY          
SEQRES   9 A  108  PRO SER SER GLY                                              
SHEET    1   A 3 ARG A  12  SER A  17  0                                        
SHEET    2   A 3 ILE A  26  ALA A  31 -1  O  ALA A  31   N  ARG A  12           
SHEET    3   A 3 PHE A  64  ILE A  67 -1  O  ILE A  67   N  ILE A  26           
SHEET    1   B 4 ALA A  56  ALA A  60  0                                        
SHEET    2   B 4 ILE A  40  ARG A  49 -1  N  TYR A  47   O  ALA A  56           
SHEET    3   B 4 LEU A  75  THR A  84 -1  O  ARG A  79   N  GLU A  46           
SHEET    4   B 4 ILE A  88  TRP A  91 -1  O  GLY A  89   N  ALA A  82           
SHEET    1   C 4 ALA A  56  ALA A  60  0                                        
SHEET    2   C 4 ILE A  40  ARG A  49 -1  N  TYR A  47   O  ALA A  56           
SHEET    3   C 4 LEU A  75  THR A  84 -1  O  ARG A  79   N  GLU A  46           
SHEET    4   C 4 LYS A  95  THR A  98 -1  O  LYS A  95   N  VAL A  78           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000