PDB Short entry for 2DMO HEADER SIGNALING PROTEIN 22-APR-06 2DMO TITLE REFINED SOLUTION STRUCTURE OF THE 1ST SH3 DOMAIN FROM HUMAN NEUTROPHIL TITLE 2 CYTOSOL FACTOR 2 (NCF-2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL CYTOSOL FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: NCF-2, NEUTROPHIL NADPH OXIDASE FACTOR 2, 67 KDA NEUTROPHIL COMPND 6 OXIDASE FACTOR, P67-PHOX, NOXA2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCF2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040921-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN, NEUTROPHIL CYTOSOL FACTOR, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,E.CHIKAYAMA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DMO 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DMO 1 VERSN REVDAT 1 02-MAY-06 2DMO 0 SPRSDE 02-MAY-06 2DMO 1X3V JRNL AUTH N.TOCHIO,E.CHIKAYAMA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 1ST SH3 DOMAIN FROM HUMAN JRNL TITL 2 NEUTROPHIL CYTOSOL FACTOR 2 (NCF-2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DMO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025595. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM SH3 DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 18 81.83 -69.79 REMARK 500 1 GLN A 25 99.75 -67.76 REMARK 500 1 TYR A 58 45.53 -101.03 REMARK 500 1 VAL A 62 69.62 -114.25 REMARK 500 2 PRO A 18 79.54 -69.74 REMARK 500 2 LEU A 35 -63.14 -108.07 REMARK 500 2 ASN A 39 52.42 -108.16 REMARK 500 2 ASP A 40 26.36 -141.74 REMARK 500 2 TYR A 58 48.06 -99.62 REMARK 500 2 PRO A 65 -175.73 -69.78 REMARK 500 3 SER A 3 -64.75 -101.69 REMARK 500 3 SER A 6 74.68 -109.66 REMARK 500 3 PRO A 18 87.06 -69.74 REMARK 500 3 GLU A 23 176.86 -56.07 REMARK 500 3 ASP A 40 42.55 -93.40 REMARK 500 3 TYR A 58 32.68 -97.17 REMARK 500 3 PRO A 65 84.65 -69.77 REMARK 500 4 PRO A 18 90.39 -69.81 REMARK 500 4 ASP A 40 43.44 -92.82 REMARK 500 4 TYR A 58 45.89 -94.45 REMARK 500 5 LEU A 13 -74.08 -71.01 REMARK 500 5 PRO A 18 81.48 -69.72 REMARK 500 5 LEU A 35 -60.53 -103.79 REMARK 500 5 ASP A 40 45.36 -93.21 REMARK 500 5 TYR A 58 40.53 -97.06 REMARK 500 6 LEU A 13 34.22 -99.03 REMARK 500 6 PRO A 18 82.74 -69.85 REMARK 500 6 TYR A 58 33.06 -97.48 REMARK 500 7 SER A 2 -71.20 -72.85 REMARK 500 7 PRO A 18 80.72 -69.74 REMARK 500 7 PRO A 65 -172.13 -69.79 REMARK 500 8 PRO A 18 83.39 -69.76 REMARK 500 8 ASP A 40 42.14 -93.83 REMARK 500 8 TYR A 58 49.18 -98.07 REMARK 500 8 VAL A 62 -64.69 -95.75 REMARK 500 9 PRO A 18 83.27 -69.79 REMARK 500 9 GLU A 22 -70.68 -61.48 REMARK 500 9 TYR A 58 49.71 -103.47 REMARK 500 9 PRO A 65 -175.77 -69.72 REMARK 500 9 SER A 66 77.87 -115.43 REMARK 500 10 SER A 6 53.38 -119.35 REMARK 500 10 LEU A 13 -67.51 -122.51 REMARK 500 10 PRO A 18 78.73 -69.80 REMARK 500 10 TYR A 58 50.52 -100.49 REMARK 500 10 SER A 63 74.16 -110.21 REMARK 500 11 PRO A 18 79.00 -69.81 REMARK 500 11 GLN A 25 103.77 -54.21 REMARK 500 11 TYR A 58 30.21 -96.69 REMARK 500 12 SER A 3 -73.90 -114.20 REMARK 500 12 PRO A 18 88.96 -69.81 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004901.1 RELATED DB: TARGETDB DBREF 2DMO A 8 62 UNP P19878 NCF2_HUMAN 242 297 SEQADV 2DMO GLY A 1 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 2 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 3 UNP P19878 CLONING ARTIFACT SEQADV 2DMO GLY A 4 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 5 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 6 UNP P19878 CLONING ARTIFACT SEQADV 2DMO GLY A 7 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 63 UNP P19878 CLONING ARTIFACT SEQADV 2DMO GLY A 64 UNP P19878 CLONING ARTIFACT SEQADV 2DMO PRO A 65 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 66 UNP P19878 CLONING ARTIFACT SEQADV 2DMO SER A 67 UNP P19878 CLONING ARTIFACT SEQADV 2DMO GLY A 68 UNP P19878 CLONING ARTIFACT SEQRES 1 A 68 GLY SER SER GLY SER SER GLY GLU ALA HIS ARG VAL LEU SEQRES 2 A 68 PHE GLY PHE VAL PRO GLU THR LYS GLU GLU LEU GLN VAL SEQRES 3 A 68 MET PRO GLY ASN ILE VAL PHE VAL LEU LYS LYS GLY ASN SEQRES 4 A 68 ASP ASN TRP ALA THR VAL MET PHE ASN GLY GLN LYS GLY SEQRES 5 A 68 LEU VAL PRO CYS ASN TYR LEU GLU PRO VAL SER GLY PRO SEQRES 6 A 68 SER SER GLY SHEET 1 A 3 ILE A 31 VAL A 34 0 SHEET 2 A 3 GLU A 8 VAL A 12 -1 N GLU A 8 O VAL A 34 SHEET 3 A 3 LEU A 59 PRO A 61 -1 O GLU A 60 N ARG A 11 SHEET 1 B 3 LYS A 36 LYS A 37 0 SHEET 2 B 3 ALA A 43 PHE A 47 -1 O THR A 44 N LYS A 36 SHEET 3 B 3 GLN A 50 VAL A 54 -1 O VAL A 54 N ALA A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000