PDB Short entry for 2DMZ
HEADER    PROTEIN BINDING                         24-APR-06   2DMZ              
TITLE     SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF HUMAN INAD-LIKE PROTEIN 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: INAD-LIKE PROTEIN;                                         
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PDZ DOMAIN;                                                
COMPND   5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT JUNCTION      
COMPND   6 PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS;                      
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: INADL, PATJ;                                                   
SOURCE   6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P050627-17;                               
SOURCE   9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS                           
KEYWDS    PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1-          
KEYWDS   2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT       
KEYWDS   3 JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL        
KEYWDS   4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN         
KEYWDS   5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL             
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   3   10-NOV-21 2DMZ    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2DMZ    1       VERSN                                    
REVDAT   1   24-OCT-06 2DMZ    0                                                
JRNL        AUTH   K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA                     
JRNL        TITL   SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF HUMAN          
JRNL        TITL 2 INAD-LIKE PROTEIN                                            
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1C, CYANA 2.0.17                              
REMARK   3   AUTHORS     : VARIAN (VNMR), GUNTERT, P. (CYANA)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2DMZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06.                  
REMARK 100 THE DEPOSITION ID IS D_1000025605.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.26MM U-15N,13C-LABELED           
REMARK 210                                   PROTEIN; 20MM D-TRIS-HCL; 100MM    
REMARK 210                                   NACL; 1MM D-DTT; 0.02% NAN3; 90%   
REMARK 210                                   H2O, 10% D2O                       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY                   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 20031121, NMRVIEW 5.0.4,   
REMARK 210                                   KUJIRA 0.93191, CYANA 2.0.17       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION,STRUCTURES WITH    
REMARK 210                                   THE LOWEST ENERGY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS                         
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY;                
REMARK 210  SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY                        
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   5       46.74     34.38                                   
REMARK 500  1 SER A   9      134.25    -34.99                                   
REMARK 500  1 ASP A  10       43.67    -83.33                                   
REMARK 500  1 SER A  12       75.71   -104.63                                   
REMARK 500  1 LYS A  24      175.73    -50.63                                   
REMARK 500  1 ASP A  25       83.21    -67.05                                   
REMARK 500  1 THR A  39      177.09    -59.86                                   
REMARK 500  1 VAL A  67      170.71    -50.09                                   
REMARK 500  1 ASN A  78       86.73    -68.98                                   
REMARK 500  1 SER A 110      167.56    -44.56                                   
REMARK 500  1 SER A 112      151.37    -40.64                                   
REMARK 500  1 PRO A 113     -167.31    -69.71                                   
REMARK 500  1 THR A 122       39.59     34.06                                   
REMARK 500  1 SER A 124       43.33    -93.64                                   
REMARK 500  1 PRO A 126        1.25    -69.74                                   
REMARK 500  2 ASP A  10       51.18   -113.68                                   
REMARK 500  2 SER A  11     -179.03    -54.35                                   
REMARK 500  2 SER A  12       93.10    -35.94                                   
REMARK 500  2 LYS A  24     -179.60    -49.71                                   
REMARK 500  2 SER A  40       63.97   -118.96                                   
REMARK 500  2 GLU A  44      116.38    -35.57                                   
REMARK 500  2 VAL A  67      173.00    -59.34                                   
REMARK 500  2 ASN A  78       91.31    -68.82                                   
REMARK 500  2 GLN A  80       96.52    -58.47                                   
REMARK 500  2 THR A 107      140.92    -33.88                                   
REMARK 500  2 SER A 108      116.37    -39.19                                   
REMARK 500  2 SER A 112      152.43    -36.37                                   
REMARK 500  2 PRO A 113     -166.47    -69.77                                   
REMARK 500  2 PRO A 117       84.05    -69.74                                   
REMARK 500  2 ASP A 119     -178.46    -69.16                                   
REMARK 500  3 SER A  12       79.23   -103.10                                   
REMARK 500  3 ASP A  25       85.91    -59.74                                   
REMARK 500  3 GLU A  44       47.01    -78.00                                   
REMARK 500  3 VAL A  67      171.68    -56.82                                   
REMARK 500  3 ASN A  78       96.57    -62.88                                   
REMARK 500  3 GLN A  80       92.47    -56.92                                   
REMARK 500  3 THR A 107      140.23    -38.28                                   
REMARK 500  3 SER A 108      172.88    -56.75                                   
REMARK 500  3 PRO A 113     -171.13    -69.73                                   
REMARK 500  3 SER A 118       40.03   -101.79                                   
REMARK 500  3 SER A 124      135.79    -37.78                                   
REMARK 500  4 ASP A  10       51.19   -113.67                                   
REMARK 500  4 SER A  11      -61.30    -99.80                                   
REMARK 500  4 SER A  12       67.68   -102.29                                   
REMARK 500  4 LYS A  24      173.05    -53.48                                   
REMARK 500  4 ASP A  25       89.14    -60.96                                   
REMARK 500  4 THR A  39       36.70    -82.81                                   
REMARK 500  4 VAL A  67      172.55    -52.60                                   
REMARK 500  4 ASN A  78       94.05    -65.80                                   
REMARK 500  4 GLN A  80       90.90    -59.92                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     234 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSO003006830.6   RELATED DB: TARGETDB                    
DBREF  2DMZ A    8   123  UNP    Q8NI35   INADL_HUMAN    355    470             
SEQADV 2DMZ GLY A    1  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A    2  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A    3  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ GLY A    4  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A    5  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A    6  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ GLY A    7  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ VAL A   53  UNP  Q8NI35    ILE   400 ENGINEERED MUTATION            
SEQADV 2DMZ SER A  124  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ GLY A  125  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ PRO A  126  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A  127  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ SER A  128  UNP  Q8NI35              CLONING ARTIFACT               
SEQADV 2DMZ GLY A  129  UNP  Q8NI35              CLONING ARTIFACT               
SEQRES   1 A  129  GLY SER SER GLY SER SER GLY GLY SER ASP SER SER LEU          
SEQRES   2 A  129  PHE GLU THR TYR ASN VAL GLU LEU VAL ARG LYS ASP GLY          
SEQRES   3 A  129  GLN SER LEU GLY ILE ARG ILE VAL GLY TYR VAL GLY THR          
SEQRES   4 A  129  SER HIS THR GLY GLU ALA SER GLY ILE TYR VAL LYS SER          
SEQRES   5 A  129  VAL ILE PRO GLY SER ALA ALA TYR HIS ASN GLY HIS ILE          
SEQRES   6 A  129  GLN VAL ASN ASP LYS ILE VAL ALA VAL ASP GLY VAL ASN          
SEQRES   7 A  129  ILE GLN GLY PHE ALA ASN HIS ASP VAL VAL GLU VAL LEU          
SEQRES   8 A  129  ARG ASN ALA GLY GLN VAL VAL HIS LEU THR LEU VAL ARG          
SEQRES   9 A  129  ARG LYS THR SER SER SER THR SER PRO LEU GLU PRO PRO          
SEQRES  10 A  129  SER ASP ARG GLY THR VAL SER GLY PRO SER SER GLY              
HELIX    1   1 SER A   57  GLY A   63  1                                   7    
HELIX    2   2 ALA A   83  ALA A   94  1                                  12    
SHEET    1   A 3 PHE A  14  LEU A  21  0                                        
SHEET    2   A 3 VAL A  98  ARG A 105 -1  O  LEU A 100   N  VAL A  19           
SHEET    3   A 3 ILE A  71  VAL A  74 -1  N  ALA A  73   O  THR A 101           
SHEET    1   B 2 ILE A  31  TYR A  36  0                                        
SHEET    2   B 2 GLY A  47  VAL A  53 -1  O  SER A  52   N  ARG A  32           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000