PDB Short entry for 2DN9 HEADER APOPTOSIS, CHAPERONE 25-APR-06 2DN9 TITLE SOLUTION STRUCTURE OF J-DOMAIN FROM THE DNAJ HOMOLOG, HUMAN TID1 TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY A MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: J-DOMAIN; COMPND 5 SYNONYM: TUMOROUS IMAGINAL DISCS PROTEIN TID56 HOMOLOG, DNAJ PROTEIN COMPND 6 TID-1, HTID-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNAJA3; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050516-13; SOURCE 9 OTHER_DETAILS: CELL-FREE SYNTHESIS KEYWDS DNAJ, J-DOMAIN, TID1, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, APOPTOSIS, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DN9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DN9 1 VERSN REVDAT 1 25-OCT-06 2DN9 0 JRNL AUTH N.KOBAYASHI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF J-DOMAIN FROM THE DNAJ HOMOLOG, HUMAN JRNL TITL 2 TID1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DN9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025615. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06MM J-DOMAIN U-13C, 15N; 20MM REMARK 210 D-TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O, REMARK 210 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 42 32.59 -89.37 REMARK 500 1 LYS A 47 -35.74 -38.56 REMARK 500 1 SER A 61 -28.56 -38.92 REMARK 500 1 SER A 77 107.90 -52.42 REMARK 500 1 SER A 78 142.94 -34.50 REMARK 500 2 SER A 6 89.64 -65.97 REMARK 500 2 ASN A 40 59.14 -111.98 REMARK 500 3 ASP A 8 97.81 -68.17 REMARK 500 3 ASN A 18 43.28 -104.14 REMARK 500 3 TYR A 35 43.67 -101.86 REMARK 500 3 ASN A 40 77.03 -105.19 REMARK 500 3 SER A 78 -70.11 -93.35 REMARK 500 4 SER A 2 81.78 -66.59 REMARK 500 4 ASN A 18 42.21 -98.64 REMARK 500 4 GLN A 21 -38.48 -38.46 REMARK 500 4 ASN A 40 72.61 -112.27 REMARK 500 4 GLU A 58 -38.82 -37.36 REMARK 500 4 PRO A 76 91.86 -69.82 REMARK 500 5 ASN A 18 39.94 -98.64 REMARK 500 5 TYR A 35 37.77 -98.16 REMARK 500 5 SER A 78 -70.50 -106.00 REMARK 500 6 GLN A 21 -35.04 -39.54 REMARK 500 6 PRO A 76 95.23 -69.81 REMARK 500 7 ASN A 18 36.35 -99.60 REMARK 500 7 GLN A 21 -30.55 -37.29 REMARK 500 7 TYR A 35 44.08 -96.75 REMARK 500 7 ASN A 40 78.74 -109.89 REMARK 500 8 ALA A 32 -34.85 -39.96 REMARK 500 9 ASN A 18 44.98 -101.64 REMARK 500 9 TYR A 35 47.25 -103.67 REMARK 500 9 ASN A 40 52.51 -97.97 REMARK 500 9 ASP A 42 30.93 -84.51 REMARK 500 9 VAL A 64 -70.04 -67.27 REMARK 500 10 ASN A 18 40.62 -97.18 REMARK 500 10 LYS A 41 87.61 -50.14 REMARK 500 10 SER A 77 96.68 -41.32 REMARK 500 11 SER A 6 150.11 -46.93 REMARK 500 11 ASN A 18 34.01 -97.72 REMARK 500 11 LYS A 41 -71.68 -78.10 REMARK 500 11 ASP A 43 96.04 -32.67 REMARK 500 12 GLN A 21 -35.91 -35.85 REMARK 500 12 TYR A 35 53.41 -113.29 REMARK 500 12 ASN A 40 59.11 -114.13 REMARK 500 12 ASP A 43 96.18 -32.89 REMARK 500 13 ASP A 8 97.52 -66.48 REMARK 500 13 ASN A 40 50.37 -112.67 REMARK 500 13 ASP A 43 96.29 -32.96 REMARK 500 13 GLU A 58 -37.15 -37.47 REMARK 500 13 SER A 61 -32.85 -39.70 REMARK 500 14 ASN A 18 42.51 -106.45 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014013.1 RELATED DB: TARGETDB DBREF 2DN9 A 8 73 UNP Q96EY1 DNJA3_HUMAN 93 159 SEQADV 2DN9 GLY A 1 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 2 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 3 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 GLY A 4 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 5 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 6 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 GLY A 7 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 74 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 GLY A 75 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 PRO A 76 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 77 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 SER A 78 UNP Q96EY1 CLONING ARTIFACT SEQADV 2DN9 GLY A 79 UNP Q96EY1 CLONING ARTIFACT SEQRES 1 A 79 GLY SER SER GLY SER SER GLY ASP TYR TYR GLN ILE LEU SEQRES 2 A 79 GLY VAL PRO ARG ASN ALA SER GLN LYS GLU ILE LYS LYS SEQRES 3 A 79 ALA TYR TYR GLN LEU ALA LYS LYS TYR HIS PRO ASP THR SEQRES 4 A 79 ASN LYS ASP ASP PRO LYS ALA LYS GLU LYS PHE SER GLN SEQRES 5 A 79 LEU ALA GLU ALA TYR GLU VAL LEU SER ASP GLU VAL LYS SEQRES 6 A 79 ARG LYS GLN TYR ASP ALA TYR GLY SER GLY PRO SER SER SEQRES 7 A 79 GLY HELIX 1 1 ASP A 8 GLY A 14 1 7 HELIX 2 2 SER A 20 TYR A 35 1 16 HELIX 3 3 LYS A 45 ASP A 62 1 18 HELIX 4 4 ASP A 62 TYR A 72 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000