PDB Short entry for 2DO4 HEADER IMMUNE SYSTEM 27-APR-06 2DO4 TITLE SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF SQUAMOUS CELL TITLE 2 CARCINOMA ANTIGEN RECOGNIZED BY T CELLS 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNIZED BY T-CELLS 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: SART-3, HSART-3, TAT-INTERACTING PROTEIN OF 110 KDA, TIP110; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SART3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051121-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIM, RDB, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DO4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DO4 1 VERSN REVDAT 1 17-APR-07 2DO4 0 JRNL AUTH S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RNA BINDING DOMAIN OF SQUAMOUS JRNL TITL 2 CELL CARCINOMA ANTIGEN RECOGNIZED BY T CELLS 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DO4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025642. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1MM 13C/15N-PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9742, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 796 155.56 -37.74 REMARK 500 1 CYS A 812 142.67 -37.71 REMARK 500 1 GLU A 868 48.18 74.50 REMARK 500 1 SER A 876 83.92 -58.85 REMARK 500 2 GLU A 799 52.17 -100.00 REMARK 500 2 ASP A 862 109.43 -41.58 REMARK 500 2 GLU A 868 46.73 72.30 REMARK 500 2 SER A 876 98.02 -54.47 REMARK 500 3 VAL A 791 40.28 -103.70 REMARK 500 3 SER A 795 -65.48 -90.97 REMARK 500 3 LYS A 800 51.64 -115.14 REMARK 500 3 PHE A 810 -35.68 -37.56 REMARK 500 3 CYS A 812 153.26 -42.26 REMARK 500 3 ASP A 862 117.35 -36.60 REMARK 500 3 SER A 876 140.12 -35.01 REMARK 500 3 SER A 878 120.00 -39.47 REMARK 500 4 CYS A 812 161.76 -44.39 REMARK 500 4 ASP A 862 102.88 -34.95 REMARK 500 4 GLU A 868 47.52 71.52 REMARK 500 4 SER A 876 142.69 -35.23 REMARK 500 5 SER A 786 151.68 -43.58 REMARK 500 5 SER A 797 66.18 -115.00 REMARK 500 5 GLU A 815 -70.82 -41.19 REMARK 500 5 ASP A 862 101.09 -35.70 REMARK 500 5 SER A 876 131.79 -39.19 REMARK 500 6 SER A 788 140.48 -37.49 REMARK 500 6 ARG A 793 74.91 -118.59 REMARK 500 6 GLU A 799 50.39 -99.05 REMARK 500 6 CYS A 812 152.01 -49.70 REMARK 500 6 ALA A 837 33.67 -90.09 REMARK 500 6 ASP A 862 106.64 -35.05 REMARK 500 6 GLU A 868 42.51 70.72 REMARK 500 6 SER A 876 143.43 -35.55 REMARK 500 7 SER A 788 123.23 -170.63 REMARK 500 7 GLU A 799 42.70 -94.58 REMARK 500 7 CYS A 812 155.27 -44.89 REMARK 500 7 ALA A 837 34.54 -93.96 REMARK 500 7 ASP A 862 103.53 -46.53 REMARK 500 7 ASN A 869 112.32 -162.16 REMARK 500 7 ASN A 877 40.97 -109.62 REMARK 500 8 SER A 785 42.09 -101.66 REMARK 500 8 LYS A 802 159.74 -46.25 REMARK 500 8 CYS A 812 159.56 -41.22 REMARK 500 8 ASN A 869 114.55 -161.75 REMARK 500 8 SER A 876 105.15 -56.64 REMARK 500 8 SER A 881 -33.57 -39.34 REMARK 500 9 SER A 786 41.62 -95.53 REMARK 500 9 GLU A 815 -71.77 -49.94 REMARK 500 9 ALA A 837 30.06 -90.36 REMARK 500 9 ASP A 862 108.21 -34.52 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DO4 A 791 877 UNP Q15020 SART3_HUMAN 791 877 SEQADV 2DO4 GLY A 784 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 785 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 786 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 787 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 788 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 789 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 790 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 878 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 879 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 PRO A 880 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 881 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 SER A 882 UNP Q15020 CLONING ARTIFACT SEQADV 2DO4 GLY A 883 UNP Q15020 CLONING ARTIFACT SEQRES 1 A 100 GLY SER SER GLY SER SER GLY VAL PHE ARG TYR SER THR SEQRES 2 A 100 SER LEU GLU LYS HIS LYS LEU PHE ILE SER GLY LEU PRO SEQRES 3 A 100 PHE SER CYS THR LYS GLU GLU LEU GLU GLU ILE CYS LYS SEQRES 4 A 100 ALA HIS GLY THR VAL LYS ASP LEU ARG LEU VAL THR ASN SEQRES 5 A 100 ARG ALA GLY LYS PRO LYS GLY LEU ALA TYR VAL GLU TYR SEQRES 6 A 100 GLU ASN GLU SER GLN ALA SER GLN ALA VAL MET LYS MET SEQRES 7 A 100 ASP GLY MET THR ILE LYS GLU ASN ILE ILE LYS VAL ALA SEQRES 8 A 100 ILE SER ASN SER GLY PRO SER SER GLY HELIX 1 1 LYS A 814 ALA A 823 1 10 HELIX 2 2 GLU A 851 MET A 861 1 11 SHEET 1 A 5 VAL A 827 LEU A 832 0 SHEET 2 A 5 LEU A 843 TYR A 848 -1 O TYR A 845 N ARG A 831 SHEET 3 A 5 LYS A 802 SER A 806 -1 N ILE A 805 O ALA A 844 SHEET 4 A 5 ILE A 870 ILE A 875 -1 O ALA A 874 N PHE A 804 SHEET 5 A 5 MET A 864 THR A 865 -1 N MET A 864 O ILE A 871 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000