PDB Short entry for 2DOH HEADER HYDROLASE 29-APR-06 2DOH TITLE THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ANGIOGENESIS INHIBITOR, TITLE 2 ANGIOSTATIN, BOUND A TO A PEPTIDE FROM THE GROUP A STREPTOCOCCAL TITLE 3 SURFACE PROTEIN PAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOSTATIN; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: KRINGLE 1,KRINGLE 2 AND KRINGLE 3; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PLASMINOGEN-BINDING GROUP A STREPTOCOCCAL M-LIKE PROTEIN COMPND 10 PAM; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: VEK-30; COMPND 13 SYNONYM: FRAGMENT; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLG; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: VEK-30 IS AN INTERNAL PEPTIDE WITHIN PAM KEYWDS LYSINE-BINDING SITE, PLASMINOGEN, KRINGLE DOMAINS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.CNUDDE,M.PROROK,F.J.CASTELLINO,J.H.GEIGER REVDAT 7 25-OCT-23 2DOH 1 REMARK REVDAT 6 10-NOV-21 2DOH 1 REMARK SEQADV REVDAT 5 11-OCT-17 2DOH 1 REMARK REVDAT 4 05-OCT-11 2DOH 1 LINK REVDAT 3 13-JUL-11 2DOH 1 VERSN REVDAT 2 24-FEB-09 2DOH 1 VERSN REVDAT 1 05-DEC-06 2DOH 0 JRNL AUTH S.E.CNUDDE,M.PROROK,F.J.CASTELLINO,J.H.GEIGER JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ANGIOGENESIS JRNL TITL 2 INHIBITOR, ANGIOSTATIN, BOUND TO A PEPTIDE FROM THE GROUP A JRNL TITL 3 STREPTOCOCCAL SURFACE PROTEIN PAM JRNL REF BIOCHEMISTRY V. 45 11052 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16964966 JRNL DOI 10.1021/BI060914J REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 17617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1521 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -2.36000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1595 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1312 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2155 ; 1.474 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3121 ; 1.557 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 7.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1760 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 303 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 449 ; 0.261 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1725 ; 0.276 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 847 ; 0.099 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.337 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.198 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.344 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.428 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 949 ; 1.405 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1539 ; 2.279 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 646 ; 3.516 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 616 ; 4.740 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 81 X 164 REMARK 3 RESIDUE RANGE : X 1001 X 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0899 21.9824 5.1946 REMARK 3 T TENSOR REMARK 3 T11: 0.0429 T22: 0.3512 REMARK 3 T33: 0.1577 T12: -0.0393 REMARK 3 T13: 0.0218 T23: 0.1397 REMARK 3 L TENSOR REMARK 3 L11: 8.3696 L22: 1.9201 REMARK 3 L33: 3.8554 L12: -1.3875 REMARK 3 L13: 0.1207 L23: -0.3572 REMARK 3 S TENSOR REMARK 3 S11: -0.1019 S12: -0.5894 S13: -0.4226 REMARK 3 S21: 0.0771 S22: 0.0581 S23: 0.0098 REMARK 3 S31: 0.0971 S32: -0.0263 S33: 0.0438 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 165 X 245 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6897 23.0053 17.5897 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.2847 REMARK 3 T33: 0.0823 T12: -0.0217 REMARK 3 T13: 0.0118 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.8431 L22: 2.9564 REMARK 3 L33: 7.6940 L12: 0.0081 REMARK 3 L13: 1.6887 L23: -1.3889 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.3747 S13: 0.2679 REMARK 3 S21: -0.0636 S22: 0.0300 S23: 0.2135 REMARK 3 S31: -0.1279 S32: 0.0092 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 304 C 326 REMARK 3 RESIDUE RANGE : C 328 C 328 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4070 25.4520 31.8573 REMARK 3 T TENSOR REMARK 3 T11: 0.2793 T22: 0.1335 REMARK 3 T33: 0.0100 T12: 0.0300 REMARK 3 T13: 0.0486 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 35.0722 L22: 9.9301 REMARK 3 L33: 11.5063 L12: 10.2448 REMARK 3 L13: 1.7128 L23: -1.0496 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.1063 S13: -0.0629 REMARK 3 S21: 0.1762 S22: 0.0224 S23: -0.0095 REMARK 3 S31: -0.5842 S32: -0.0438 S33: 0.0920 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 331 C 375 REMARK 3 RESIDUE RANGE : X 1002 X 1267 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7015 20.9814 14.5417 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.4950 REMARK 3 T33: 0.3197 T12: 0.0027 REMARK 3 T13: 0.0464 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 2.2407 L22: 0.2801 REMARK 3 L33: 0.9971 L12: 0.1322 REMARK 3 L13: 1.0089 L23: -0.2224 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.0201 S13: 0.1000 REMARK 3 S21: 0.1250 S22: 0.0244 S23: 0.0630 REMARK 3 S31: -0.0264 S32: -0.0828 S33: -0.0248 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-00 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 19.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1KI0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M POTASSIUM PHOSPHATE REMARK 280 (DIHYDRATE), 5% DIOXANE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.34433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 260.68867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 195.51650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 325.86083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.17217 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 130.34433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 260.68867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 325.86083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 195.51650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.17217 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 356 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO X 246 REMARK 465 PRO X 247 REMARK 465 PRO X 248 REMARK 465 SER X 249 REMARK 465 SER X 250 REMARK 465 GLY X 251 REMARK 465 PRO X 252 REMARK 465 THR X 253 REMARK 465 TYR X 254 REMARK 465 GLN X 255 REMARK 465 CYS X 256 REMARK 465 LEU X 257 REMARK 465 LYS X 258 REMARK 465 GLY X 259 REMARK 465 THR X 260 REMARK 465 GLY X 261 REMARK 465 GLU X 262 REMARK 465 ASN X 263 REMARK 465 TYR X 264 REMARK 465 ARG X 265 REMARK 465 GLY X 266 REMARK 465 ASN X 267 REMARK 465 VAL X 268 REMARK 465 ALA X 269 REMARK 465 VAL X 270 REMARK 465 THR X 271 REMARK 465 VAL X 272 REMARK 465 SER X 273 REMARK 465 GLY X 274 REMARK 465 HIS X 275 REMARK 465 THR X 276 REMARK 465 CYS X 277 REMARK 465 GLN X 278 REMARK 465 HIS X 279 REMARK 465 TRP X 280 REMARK 465 SER X 281 REMARK 465 ALA X 282 REMARK 465 GLN X 283 REMARK 465 THR X 284 REMARK 465 PRO X 285 REMARK 465 HIS X 286 REMARK 465 THR X 287 REMARK 465 HIS X 288 REMARK 465 GLU X 289 REMARK 465 ARG X 290 REMARK 465 THR X 291 REMARK 465 PRO X 292 REMARK 465 GLU X 293 REMARK 465 ASN X 294 REMARK 465 PHE X 295 REMARK 465 PRO X 296 REMARK 465 CYS X 297 REMARK 465 LYS X 298 REMARK 465 ASN X 299 REMARK 465 LEU X 300 REMARK 465 ASP X 301 REMARK 465 GLU X 302 REMARK 465 ASN X 303 REMARK 465 TYR X 304 REMARK 465 CYS X 305 REMARK 465 ARG X 306 REMARK 465 ASN X 307 REMARK 465 PRO X 308 REMARK 465 ASP X 309 REMARK 465 GLY X 310 REMARK 465 LYS X 311 REMARK 465 ARG X 312 REMARK 465 ALA X 313 REMARK 465 PRO X 314 REMARK 465 VAL C 301 REMARK 465 GLU C 302 REMARK 465 LYS C 303 REMARK 465 LEU C 327 REMARK 465 GLU C 329 REMARK 465 TYR C 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 164 CG CD OE1 OE2 REMARK 470 ARG X 242 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 1126 O HOH X 1184 1.83 REMARK 500 NZ LYS X 204 O HOH X 1189 1.93 REMARK 500 OE1 GLU X 129 O HOH X 1193 2.01 REMARK 500 OD2 ASP X 191 O HOH X 1060 2.03 REMARK 500 ND1 HIS X 123 O HOH X 1207 2.04 REMARK 500 O HOH X 1114 O HOH X 1154 2.05 REMARK 500 N TRP X 144 O HOH X 1251 2.05 REMARK 500 O HOH X 1102 O HOH X 1257 2.05 REMARK 500 OG1 THR C 305 O HOH C 347 2.07 REMARK 500 O HOH X 1049 O HOH X 1240 2.11 REMARK 500 O HOH X 1130 O HOH X 1187 2.11 REMARK 500 O HOH X 1101 O HOH X 1205 2.14 REMARK 500 ND1 HIS X 168 O HOH X 1197 2.15 REMARK 500 O HOH X 1092 O HOH X 1244 2.17 REMARK 500 CG HIS X 123 O HOH X 1207 2.19 REMARK 500 O ALA X 197 NH2 ARG X 234 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 1084 O HOH X 1102 8665 1.98 REMARK 500 O HOH C 331 O HOH C 331 12555 2.02 REMARK 500 O HOH X 1084 O HOH X 1257 8665 2.11 REMARK 500 O HOH X 1135 O HOH X 1150 8665 2.14 REMARK 500 O HOH X 1052 O HOH X 1056 8665 2.16 REMARK 500 O HOH X 1075 O HOH X 1256 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 158 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU X 83 42.29 -96.46 REMARK 500 GLU X 130 -122.89 38.39 REMARK 500 GLU X 163 -145.01 72.39 REMARK 500 GLU X 164 -67.53 -142.59 REMARK 500 GLU X 165 -49.70 41.87 REMARK 500 CYS X 169 -114.97 60.79 REMARK 500 LYS X 212 -122.47 46.92 REMARK 500 ASP X 219 28.64 -143.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU X 164 GLU X 165 -144.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO X 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DOI RELATED DB: PDB REMARK 900 THE SAME PROTEIN, DIFFERENT SPACE GROUP DBREF 2DOH X 81 314 UNP P00747 PLMN_HUMAN 100 333 DBREF 2DOH C 301 330 PDB 2DOH 2DOH 301 330 SEQADV 2DOH GLU X 289 UNP P00747 ASN 308 ENGINEERED MUTATION SEQRES 1 X 234 LEU SER GLU CYS LYS THR GLY ASN GLY LYS ASN TYR ARG SEQRES 2 X 234 GLY THR MET SER LYS THR LYS ASN GLY ILE THR CYS GLN SEQRES 3 X 234 LYS TRP SER SER THR SER PRO HIS ARG PRO ARG PHE SER SEQRES 4 X 234 PRO ALA THR HIS PRO SER GLU GLY LEU GLU GLU ASN TYR SEQRES 5 X 234 CYS ARG ASN PRO ASP ASN ASP PRO GLN GLY PRO TRP CYS SEQRES 6 X 234 TYR THR THR ASP PRO GLU LYS ARG TYR ASP TYR CYS ASP SEQRES 7 X 234 ILE LEU GLU CYS GLU GLU GLU CYS MET HIS CYS SER GLY SEQRES 8 X 234 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 9 X 234 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 10 X 234 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 11 X 234 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG GLU LEU ARG SEQRES 12 X 234 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 13 X 234 LEU CYS ASP ILE PRO ARG CYS THR THR PRO PRO PRO SER SEQRES 14 X 234 SER GLY PRO THR TYR GLN CYS LEU LYS GLY THR GLY GLU SEQRES 15 X 234 ASN TYR ARG GLY ASN VAL ALA VAL THR VAL SER GLY HIS SEQRES 16 X 234 THR CYS GLN HIS TRP SER ALA GLN THR PRO HIS THR HIS SEQRES 17 X 234 GLU ARG THR PRO GLU ASN PHE PRO CYS LYS ASN LEU ASP SEQRES 18 X 234 GLU ASN TYR CYS ARG ASN PRO ASP GLY LYS ARG ALA PRO SEQRES 1 C 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 C 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 C 30 LEU SER GLU TYR HET DIO X1001 12 HETNAM DIO 1,4-DIETHYLENE DIOXIDE FORMUL 3 DIO C4 H8 O2 FORMUL 4 HOH *311(H2 O) HELIX 1 1 ILE X 201 ASN X 209 5 9 HELIX 2 2 THR C 305 LEU C 326 1 22 SHEET 1 A 2 TRP X 144 TYR X 146 0 SHEET 2 A 2 TYR X 154 TYR X 156 -1 O ASP X 155 N CYS X 145 SHEET 1 B 2 TRP X 225 PHE X 227 0 SHEET 2 B 2 TRP X 235 LEU X 237 -1 O GLU X 236 N CYS X 226 SSBOND 1 CYS X 84 CYS X 162 1555 1555 2.04 SSBOND 2 CYS X 105 CYS X 145 1555 1555 2.03 SSBOND 3 CYS X 133 CYS X 157 1555 1555 2.06 SSBOND 4 CYS X 166 CYS X 243 1555 1555 2.06 SSBOND 5 CYS X 187 CYS X 226 1555 1555 2.01 SSBOND 6 CYS X 215 CYS X 238 1555 1555 2.06 CISPEP 1 SER X 112 PRO X 113 0 -1.06 CISPEP 2 SER X 194 PRO X 195 0 -1.71 SITE 1 AC1 9 GLU X 172 TYR X 174 ASP X 175 ASN X 207 SITE 2 AC1 9 LYS X 208 ASN X 209 HOH X1018 HOH X1115 SITE 3 AC1 9 HOH X1162 CRYST1 58.377 58.377 391.033 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017130 0.009890 0.000000 0.00000 SCALE2 0.000000 0.019780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002560 0.00000