PDB Short entry for 2DOI HEADER HYDROLASE 29-APR-06 2DOI TITLE THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ANGIOGENESIS INHIBITOR, TITLE 2 ANGIOSTATIN, BOUND TO A PEPTIDE FROM THE GROUP A STREPTOCOCCUS TITLE 3 PROTEIN PAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOSTATIN; COMPND 3 CHAIN: X, A; COMPND 4 FRAGMENT: KRINGLE 1,KRINGLE 2 AND KRINGLE 3; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PLASMINOGEN-BINDING GROUP A STREPTOCOCCAL M-LIKE PROTEIN COMPND 10 PAM; COMPND 11 CHAIN: C, B; COMPND 12 FRAGMENT: VEK-30; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLG; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: VEK-30 IS AN INTERNAL PEPTIDE WITHIN THE SOURCE 11 STREPTOCOCCUS PROTEIN PAM KEYWDS PLASMINOGEN, KRINGLE DOMAIN, LYSINE-BINDING SITE, PSEUDO-LYSINE KEYWDS 2 MOIETY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.CNUDDE,M.PROROK,F.J.CASTELLINO,J.H.GEIGER REVDAT 6 25-OCT-23 2DOI 1 REMARK REVDAT 5 10-NOV-21 2DOI 1 SEQADV REVDAT 4 11-OCT-17 2DOI 1 REMARK REVDAT 3 13-JUL-11 2DOI 1 VERSN REVDAT 2 24-FEB-09 2DOI 1 VERSN REVDAT 1 05-DEC-06 2DOI 0 JRNL AUTH S.E.CNUDDE,M.PROROK,F.J.CASTELLINO,J.H.GEIGER JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF THE ANGIOGENESIS JRNL TITL 2 INHIBITOR, ANGIOSTATIN, BOUND TO A PEPTIDE FROM THE GROUP A JRNL TITL 3 STREPTOCOCCAL SURFACE PROTEIN PAM JRNL REF BIOCHEMISTRY V. 45 11052 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16964966 JRNL DOI 10.1021/BI060914J REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 13107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 823 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3064 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -2.68000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.683 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.468 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.386 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.839 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3157 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4277 ; 2.593 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 9.614 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;38.818 ;24.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;25.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;23.700 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2476 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2119 ; 0.380 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2056 ; 0.372 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.335 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.358 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.457 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1969 ;15.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3077 ;19.526 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1398 ;30.591 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1200 ;32.957 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 81 X 298 REMARK 3 RESIDUE RANGE : C 303 C 326 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1931 47.2740 0.9430 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.0744 REMARK 3 T33: -0.0330 T12: 0.2552 REMARK 3 T13: 0.0983 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.9476 L22: 6.2745 REMARK 3 L33: 2.6234 L12: -2.2926 REMARK 3 L13: 1.3984 L23: -4.0215 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.2298 S13: 0.1965 REMARK 3 S21: -0.0104 S22: -0.0103 S23: -0.2917 REMARK 3 S31: -0.2869 S32: -0.1026 S33: -0.0005 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 244 REMARK 3 RESIDUE RANGE : B 304 B 327 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8923 23.8387 -26.8743 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.0066 REMARK 3 T33: 0.0152 T12: 0.1824 REMARK 3 T13: 0.0627 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 2.5072 L22: 3.9405 REMARK 3 L33: 2.3077 L12: -3.0001 REMARK 3 L13: -2.4017 L23: 2.8243 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.0465 S13: -0.0363 REMARK 3 S21: 0.0003 S22: 0.1526 S23: 0.3300 REMARK 3 S31: -0.1023 S32: -0.0812 S33: -0.0513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0719 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 2DOH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.1M POTASSIUM PHOPHATE REMARK 280 (DIHYDRATE), 5% DIOXANE, SOAKED IN 5MM PT(C5H5N)2CL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 129.71533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 259.43067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 194.57300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 324.28833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.85767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO X 246 REMARK 465 PRO X 247 REMARK 465 PRO X 248 REMARK 465 SER X 249 REMARK 465 SER X 250 REMARK 465 GLY X 251 REMARK 465 PRO X 252 REMARK 465 THR X 253 REMARK 465 TYR X 254 REMARK 465 GLN X 255 REMARK 465 CYS X 256 REMARK 465 LEU X 257 REMARK 465 LYS X 258 REMARK 465 GLY X 259 REMARK 465 THR X 260 REMARK 465 GLY X 261 REMARK 465 GLU X 262 REMARK 465 ASN X 263 REMARK 465 TYR X 264 REMARK 465 ARG X 265 REMARK 465 GLY X 266 REMARK 465 ASN X 267 REMARK 465 VAL X 268 REMARK 465 ALA X 269 REMARK 465 VAL X 270 REMARK 465 THR X 271 REMARK 465 VAL X 272 REMARK 465 SER X 273 REMARK 465 GLY X 274 REMARK 465 HIS X 275 REMARK 465 THR X 276 REMARK 465 CYS X 277 REMARK 465 GLN X 278 REMARK 465 HIS X 279 REMARK 465 TRP X 280 REMARK 465 SER X 281 REMARK 465 ALA X 282 REMARK 465 GLN X 283 REMARK 465 THR X 284 REMARK 465 PRO X 285 REMARK 465 HIS X 286 REMARK 465 THR X 287 REMARK 465 HIS X 288 REMARK 465 GLU X 289 REMARK 465 ARG X 290 REMARK 465 THR X 291 REMARK 465 PRO X 292 REMARK 465 GLU X 293 REMARK 465 ASN X 294 REMARK 465 PHE X 295 REMARK 465 ASN X 299 REMARK 465 LEU X 300 REMARK 465 ASP X 301 REMARK 465 GLU X 302 REMARK 465 ASN X 303 REMARK 465 TYR X 304 REMARK 465 CYS X 305 REMARK 465 ARG X 306 REMARK 465 ASN X 307 REMARK 465 PRO X 308 REMARK 465 ASP X 309 REMARK 465 GLY X 310 REMARK 465 LYS X 311 REMARK 465 ARG X 312 REMARK 465 ALA X 313 REMARK 465 PRO X 314 REMARK 465 VAL C 301 REMARK 465 GLU C 302 REMARK 465 LYS C 327 REMARK 465 SER C 328 REMARK 465 GLU C 329 REMARK 465 TYR C 330 REMARK 465 THR A 245 REMARK 465 PRO A 246 REMARK 465 PRO A 247 REMARK 465 PRO A 248 REMARK 465 SER A 249 REMARK 465 SER A 250 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 THR A 253 REMARK 465 TYR A 254 REMARK 465 GLN A 255 REMARK 465 CYS A 256 REMARK 465 LEU A 257 REMARK 465 LYS A 258 REMARK 465 GLY A 259 REMARK 465 THR A 260 REMARK 465 GLY A 261 REMARK 465 GLU A 262 REMARK 465 ASN A 263 REMARK 465 TYR A 264 REMARK 465 ARG A 265 REMARK 465 GLY A 266 REMARK 465 ASN A 267 REMARK 465 VAL A 268 REMARK 465 ALA A 269 REMARK 465 VAL A 270 REMARK 465 THR A 271 REMARK 465 VAL A 272 REMARK 465 SER A 273 REMARK 465 GLY A 274 REMARK 465 HIS A 275 REMARK 465 THR A 276 REMARK 465 CYS A 277 REMARK 465 GLN A 278 REMARK 465 HIS A 279 REMARK 465 TRP A 280 REMARK 465 SER A 281 REMARK 465 ALA A 282 REMARK 465 GLN A 283 REMARK 465 THR A 284 REMARK 465 PRO A 285 REMARK 465 HIS A 286 REMARK 465 THR A 287 REMARK 465 HIS A 288 REMARK 465 GLU A 289 REMARK 465 ARG A 290 REMARK 465 THR A 291 REMARK 465 PRO A 292 REMARK 465 GLU A 293 REMARK 465 ASN A 294 REMARK 465 PHE A 295 REMARK 465 PRO A 296 REMARK 465 CYS A 297 REMARK 465 LYS A 298 REMARK 465 ASN A 299 REMARK 465 LEU A 300 REMARK 465 ASP A 301 REMARK 465 GLU A 302 REMARK 465 ASN A 303 REMARK 465 TYR A 304 REMARK 465 CYS A 305 REMARK 465 ARG A 306 REMARK 465 ASN A 307 REMARK 465 PRO A 308 REMARK 465 ASP A 309 REMARK 465 GLY A 310 REMARK 465 LYS A 311 REMARK 465 ARG A 312 REMARK 465 ALA A 313 REMARK 465 PRO A 314 REMARK 465 VAL B 301 REMARK 465 GLU B 302 REMARK 465 LYS B 303 REMARK 465 SER B 328 REMARK 465 GLU B 329 REMARK 465 TYR B 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 98 CG CD CE NZ REMARK 470 LEU X 160 CG CD1 CD2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 183 OE1 GLU A 236 1.82 REMARK 500 O PRO A 124 N GLU A 126 1.96 REMARK 500 NH2 ARG A 223 O CYS A 238 1.98 REMARK 500 O ALA A 197 NH2 ARG A 234 2.02 REMARK 500 O THR X 181 N GLY X 184 2.03 REMARK 500 O GLU X 163 OD2 ASP X 175 2.07 REMARK 500 OD2 ASP A 139 OH TYR A 156 2.08 REMARK 500 O ALA C 306 N GLU C 309 2.12 REMARK 500 O ARG C 317 N GLU C 320 2.12 REMARK 500 O GLU C 324 N LEU C 326 2.14 REMARK 500 O GLN C 311 ND2 ASN C 315 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS X 133 CB CYS X 133 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO X 124 C - N - CA ANGL. DEV. = 14.3 DEGREES REMARK 500 PRO X 124 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU X 128 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO X 136 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 GLU X 164 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 LEU X 185 CB - CG - CD2 ANGL. DEV. = -10.6 DEGREES REMARK 500 LEU C 304 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU C 326 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 PRO A 116 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO A 124 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 PRO A 136 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 THR A 181 CB - CA - C ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO A 241 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 88 -5.16 -56.43 REMARK 500 LYS X 90 -65.95 -20.44 REMARK 500 ARG X 93 23.16 -155.94 REMARK 500 THR X 99 167.94 -45.08 REMARK 500 LYS X 100 -1.43 -54.66 REMARK 500 ALA X 121 -85.70 -52.88 REMARK 500 HIS X 123 54.26 -117.67 REMARK 500 LEU X 128 73.21 -67.58 REMARK 500 GLU X 130 -147.83 58.48 REMARK 500 ASN X 138 41.77 78.95 REMARK 500 PRO X 143 146.52 -35.41 REMARK 500 ARG X 153 -87.90 -67.12 REMARK 500 ILE X 159 93.99 -179.55 REMARK 500 LEU X 160 126.68 -37.82 REMARK 500 CYS X 162 -138.63 -86.69 REMARK 500 GLU X 163 -163.76 36.56 REMARK 500 GLU X 164 3.03 -178.34 REMARK 500 GLU X 165 -77.62 69.03 REMARK 500 CYS X 169 -92.82 95.51 REMARK 500 TYR X 174 114.11 -15.52 REMARK 500 MET X 182 -72.11 -19.23 REMARK 500 SER X 183 -30.71 -36.51 REMARK 500 SER X 203 -73.00 -30.69 REMARK 500 LYS X 204 -20.91 -34.94 REMARK 500 PHE X 205 70.97 -150.15 REMARK 500 ASN X 209 74.47 53.53 REMARK 500 LEU X 210 47.94 -102.30 REMARK 500 LYS X 211 135.26 -36.90 REMARK 500 LYS X 212 -111.65 29.21 REMARK 500 ASN X 213 42.72 -147.33 REMARK 500 ARG X 220 48.98 35.04 REMARK 500 TRP X 225 -176.26 -177.60 REMARK 500 PRO X 231 -19.46 -42.92 REMARK 500 ARG X 234 -72.18 -38.66 REMARK 500 ASP X 239 63.72 -102.93 REMARK 500 CYS X 243 -71.36 -70.99 REMARK 500 CYS X 297 -37.97 152.78 REMARK 500 LEU C 304 -122.76 -73.66 REMARK 500 THR C 305 -177.14 20.66 REMARK 500 ALA C 306 -96.65 -53.39 REMARK 500 ASP C 307 -72.20 -21.07 REMARK 500 ALA C 308 -44.95 -25.10 REMARK 500 GLN C 311 -56.63 -28.42 REMARK 500 ARG C 317 -71.56 -52.16 REMARK 500 ARG C 325 -18.28 -38.24 REMARK 500 SER A 82 91.41 -46.10 REMARK 500 GLU A 83 17.34 -58.31 REMARK 500 LYS A 90 -76.73 -24.15 REMARK 500 SER A 97 17.32 -141.11 REMARK 500 THR A 111 57.30 -142.73 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 208 ASN A 209 149.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DOH RELATED DB: PDB REMARK 900 THE SAME PROTEIN BUT DIFFERENT SPACE GROUP. DBREF 2DOI X 81 314 UNP P00747 PLMN_HUMAN 100 333 DBREF 2DOI A 81 314 UNP P00747 PLMN_HUMAN 100 333 DBREF 2DOI C 301 329 UNP P49054 PAM_STRPY 85 113 DBREF 2DOI B 301 329 UNP P49054 PAM_STRPY 85 113 SEQADV 2DOI GLU X 289 UNP P00747 ASN 308 ENGINEERED MUTATION SEQADV 2DOI GLU A 289 UNP P00747 ASN 308 ENGINEERED MUTATION SEQADV 2DOI TYR C 330 UNP P49054 CLONING ARTIFACT SEQADV 2DOI TYR B 330 UNP P49054 CLONING ARTIFACT SEQRES 1 X 234 LEU SER GLU CYS LYS THR GLY ASN GLY LYS ASN TYR ARG SEQRES 2 X 234 GLY THR MET SER LYS THR LYS ASN GLY ILE THR CYS GLN SEQRES 3 X 234 LYS TRP SER SER THR SER PRO HIS ARG PRO ARG PHE SER SEQRES 4 X 234 PRO ALA THR HIS PRO SER GLU GLY LEU GLU GLU ASN TYR SEQRES 5 X 234 CYS ARG ASN PRO ASP ASN ASP PRO GLN GLY PRO TRP CYS SEQRES 6 X 234 TYR THR THR ASP PRO GLU LYS ARG TYR ASP TYR CYS ASP SEQRES 7 X 234 ILE LEU GLU CYS GLU GLU GLU CYS MET HIS CYS SER GLY SEQRES 8 X 234 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 9 X 234 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 10 X 234 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 11 X 234 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG GLU LEU ARG SEQRES 12 X 234 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 13 X 234 LEU CYS ASP ILE PRO ARG CYS THR THR PRO PRO PRO SER SEQRES 14 X 234 SER GLY PRO THR TYR GLN CYS LEU LYS GLY THR GLY GLU SEQRES 15 X 234 ASN TYR ARG GLY ASN VAL ALA VAL THR VAL SER GLY HIS SEQRES 16 X 234 THR CYS GLN HIS TRP SER ALA GLN THR PRO HIS THR HIS SEQRES 17 X 234 GLU ARG THR PRO GLU ASN PHE PRO CYS LYS ASN LEU ASP SEQRES 18 X 234 GLU ASN TYR CYS ARG ASN PRO ASP GLY LYS ARG ALA PRO SEQRES 1 C 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 C 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 C 30 LYS SER GLU TYR SEQRES 1 A 234 LEU SER GLU CYS LYS THR GLY ASN GLY LYS ASN TYR ARG SEQRES 2 A 234 GLY THR MET SER LYS THR LYS ASN GLY ILE THR CYS GLN SEQRES 3 A 234 LYS TRP SER SER THR SER PRO HIS ARG PRO ARG PHE SER SEQRES 4 A 234 PRO ALA THR HIS PRO SER GLU GLY LEU GLU GLU ASN TYR SEQRES 5 A 234 CYS ARG ASN PRO ASP ASN ASP PRO GLN GLY PRO TRP CYS SEQRES 6 A 234 TYR THR THR ASP PRO GLU LYS ARG TYR ASP TYR CYS ASP SEQRES 7 A 234 ILE LEU GLU CYS GLU GLU GLU CYS MET HIS CYS SER GLY SEQRES 8 A 234 GLU ASN TYR ASP GLY LYS ILE SER LYS THR MET SER GLY SEQRES 9 A 234 LEU GLU CYS GLN ALA TRP ASP SER GLN SER PRO HIS ALA SEQRES 10 A 234 HIS GLY TYR ILE PRO SER LYS PHE PRO ASN LYS ASN LEU SEQRES 11 A 234 LYS LYS ASN TYR CYS ARG ASN PRO ASP ARG GLU LEU ARG SEQRES 12 A 234 PRO TRP CYS PHE THR THR ASP PRO ASN LYS ARG TRP GLU SEQRES 13 A 234 LEU CYS ASP ILE PRO ARG CYS THR THR PRO PRO PRO SER SEQRES 14 A 234 SER GLY PRO THR TYR GLN CYS LEU LYS GLY THR GLY GLU SEQRES 15 A 234 ASN TYR ARG GLY ASN VAL ALA VAL THR VAL SER GLY HIS SEQRES 16 A 234 THR CYS GLN HIS TRP SER ALA GLN THR PRO HIS THR HIS SEQRES 17 A 234 GLU ARG THR PRO GLU ASN PHE PRO CYS LYS ASN LEU ASP SEQRES 18 A 234 GLU ASN TYR CYS ARG ASN PRO ASP GLY LYS ARG ALA PRO SEQRES 1 B 30 VAL GLU LYS LEU THR ALA ASP ALA GLU LEU GLN ARG LEU SEQRES 2 B 30 LYS ASN GLU ARG HIS GLU GLU ALA GLU LEU GLU ARG LEU SEQRES 3 B 30 LYS SER GLU TYR HELIX 1 1 PHE X 205 ASN X 209 5 5 HELIX 2 2 ASP C 307 LEU C 326 1 20 HELIX 3 3 THR B 305 LEU B 326 1 22 SHEET 1 A 2 TRP X 144 TYR X 146 0 SHEET 2 A 2 TYR X 154 TYR X 156 -1 O ASP X 155 N CYS X 145 SHEET 1 B 2 TRP X 225 PHE X 227 0 SHEET 2 B 2 TRP X 235 LEU X 237 -1 O GLU X 236 N CYS X 226 SHEET 1 C 2 TRP A 144 TYR A 146 0 SHEET 2 C 2 TYR A 154 TYR A 156 -1 O ASP A 155 N CYS A 145 SHEET 1 D 2 TRP A 225 PHE A 227 0 SHEET 2 D 2 TRP A 235 LEU A 237 -1 O GLU A 236 N CYS A 226 SSBOND 1 CYS X 84 CYS X 162 1555 1555 2.09 SSBOND 2 CYS X 105 CYS X 145 1555 1555 2.04 SSBOND 3 CYS X 133 CYS X 157 1555 1555 2.04 SSBOND 4 CYS X 166 CYS X 243 1555 1555 2.04 SSBOND 5 CYS X 169 CYS X 297 1555 1555 2.06 SSBOND 6 CYS X 187 CYS X 226 1555 1555 2.06 SSBOND 7 CYS X 215 CYS X 238 1555 1555 2.01 SSBOND 8 CYS A 84 CYS A 162 1555 1555 2.04 SSBOND 9 CYS A 105 CYS A 145 1555 1555 2.08 SSBOND 10 CYS A 133 CYS A 157 1555 1555 2.04 SSBOND 11 CYS A 166 CYS A 243 1555 1555 2.05 SSBOND 12 CYS A 187 CYS A 226 1555 1555 2.04 SSBOND 13 CYS A 215 CYS A 238 1555 1555 2.00 CISPEP 1 SER X 112 PRO X 113 0 7.08 CISPEP 2 SER X 194 PRO X 195 0 9.72 CISPEP 3 SER A 112 PRO A 113 0 -6.04 CISPEP 4 SER A 194 PRO A 195 0 4.60 CRYST1 58.467 58.467 389.146 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017100 0.009880 0.000000 0.00000 SCALE2 0.000000 0.019750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002570 0.00000