PDB Short entry for 2DOU HEADER TRANSFERASE 03-MAY-06 2DOU TITLE PROBABLE N-SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE (TTHA0342) FROM TITLE 2 THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE N-SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT ENZYME, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.OMI,M.GOTO,I.MIYAHARA,K.HIROTSU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2DOU 1 VERSN REVDAT 2 24-FEB-09 2DOU 1 VERSN REVDAT 1 03-NOV-06 2DOU 0 JRNL AUTH R.OMI,M.GOTO,I.MIYAHARA,K.HIROTSU JRNL TITL PROBABLE N-SUCCINYLDIAMINOPIMELATE AMINOTRANSFERASE JRNL TITL 2 (TTHA0342) FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2778754.580 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5791 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8422 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 945 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.009 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.38000 REMARK 3 B22 (A**2) : 4.38000 REMARK 3 B33 (A**2) : -8.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.23 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.88 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.060 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 24.400; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 22.160; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 39.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DOU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAY-06. REMARK 100 THE RCSB ID CODE IS RCSB025667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1109831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 8000, PH 7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.09500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.74500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.04750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.74500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.14250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.04750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 129.14250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 376 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ARG B 3 REMARK 465 VAL B 4 REMARK 465 PRO B 5 REMARK 465 GLU B 6 REMARK 465 PRO B 7 REMARK 465 ASP B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 23 CB CG CD NE CZ NH1 NH2 REMARK 470 VAL A 25 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ARG A 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 301 CG CD CE NZ REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 VAL B 25 CG1 CG2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 279 CG CD CE NZ REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 LYS B 301 CB CG CD CE NZ REMARK 470 GLU B 321 CG CD OE1 OE2 REMARK 470 GLU B 327 CG CD OE1 OE2 REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 LYS B 369 CG CD CE NZ REMARK 470 ARG B 372 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LEU B 375 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 34 C THR A 35 N 0.239 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 34 CA - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 1.85 -58.60 REMARK 500 GLU A 111 1.16 81.30 REMARK 500 ARG A 221 12.19 -148.02 REMARK 500 ARG A 238 73.61 50.50 REMARK 500 SER A 245 114.57 -27.52 REMARK 500 ASN A 262 -178.46 57.70 REMARK 500 THR A 312 168.74 72.55 REMARK 500 VAL B 12 -83.72 -44.98 REMARK 500 VAL B 13 -37.72 -35.38 REMARK 500 ALA B 16 2.07 -58.43 REMARK 500 ARG B 23 9.63 -60.67 REMARK 500 ARG B 88 -35.83 -137.61 REMARK 500 GLU B 111 -1.59 87.84 REMARK 500 ALA B 159 153.85 -49.11 REMARK 500 LYS B 219 -2.99 -56.94 REMARK 500 ARG B 221 11.41 -148.15 REMARK 500 SER B 245 113.66 -38.44 REMARK 500 ASN B 262 -175.93 70.42 REMARK 500 THR B 312 176.28 72.22 REMARK 500 VAL B 323 133.74 -31.66 REMARK 500 ARG B 343 -38.91 -37.84 REMARK 500 LYS B 350 103.50 -51.89 REMARK 500 ALA B 374 11.09 -63.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 34 11.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000024.1 RELATED DB: TARGETDB DBREF 2DOU A 1 376 UNP Q5SLF1 Q5SLF1_THET8 1 376 DBREF 2DOU B 1 376 UNP Q5SLF1 Q5SLF1_THET8 1 376 SEQRES 1 A 376 MET SER ARG VAL PRO GLU PRO SER VAL PHE LEU VAL VAL SEQRES 2 A 376 ASP GLU ALA LYS ARG LYS ALA ARG GLU ARG GLY VAL GLY SEQRES 3 A 376 LEU ILE ASP LEU SER ILE GLY SER THR ASP LEU PRO PRO SEQRES 4 A 376 PRO GLU ALA PRO LEU LYS ALA LEU ALA GLU ALA LEU ASN SEQRES 5 A 376 ASP PRO THR THR TYR GLY TYR CYS LEU LYS SER CYS THR SEQRES 6 A 376 LEU PRO PHE LEU GLU GLU ALA ALA ARG TRP TYR GLU GLY SEQRES 7 A 376 ARG TYR GLY VAL GLY LEU ASP PRO ARG ARG GLU ALA LEU SEQRES 8 A 376 ALA LEU ILE GLY SER GLN GLU GLY LEU ALA HIS LEU LEU SEQRES 9 A 376 LEU ALA LEU THR GLU PRO GLU ASP LEU LEU LEU LEU PRO SEQRES 10 A 376 GLU VAL ALA TYR PRO SER TYR PHE GLY ALA ALA ARG VAL SEQRES 11 A 376 ALA SER LEU ARG THR PHE LEU ILE PRO LEU ARG GLU ASP SEQRES 12 A 376 GLY LEU ALA ASP LEU LYS ALA VAL PRO GLU GLY VAL TRP SEQRES 13 A 376 ARG GLU ALA LYS VAL LEU LEU LEU ASN TYR PRO ASN ASN SEQRES 14 A 376 PRO THR GLY ALA VAL ALA ASP TRP GLY TYR PHE GLU GLU SEQRES 15 A 376 ALA LEU GLY LEU ALA ARG LYS HIS GLY LEU TRP LEU ILE SEQRES 16 A 376 HIS ASP ASN PRO TYR VAL ASP GLN VAL TYR GLU GLY GLU SEQRES 17 A 376 ALA PRO SER PRO LEU ALA LEU PRO GLY ALA LYS GLU ARG SEQRES 18 A 376 VAL VAL GLU LEU PHE SER LEU SER LYS SER TYR ASN LEU SEQRES 19 A 376 ALA GLY PHE ARG LEU GLY PHE ALA LEU GLY SER GLU GLU SEQRES 20 A 376 ALA LEU ALA ARG LEU GLU ARG VAL LYS GLY VAL ILE ASP SEQRES 21 A 376 PHE ASN GLN TYR ALA GLY VAL LEU ARG MET GLY VAL GLU SEQRES 22 A 376 ALA LEU LYS THR PRO LYS GLU VAL VAL ARG GLY TYR ALA SEQRES 23 A 376 ARG VAL TYR ARG GLU ARG ALA LEU GLY MET ALA GLU ALA SEQRES 24 A 376 LEU LYS GLY VAL LEU SER LEU LEU PRO PRO ARG ALA THR SEQRES 25 A 376 MET TYR LEU TRP GLY ARG LEU PRO GLU GLY VAL ASP ASP SEQRES 26 A 376 LEU GLU PHE GLY LEU ARG LEU VAL GLU ARG GLY VAL ALA SEQRES 27 A 376 LEU ALA PRO GLY ARG GLY PHE GLY PRO GLY GLY LYS GLY SEQRES 28 A 376 PHE VAL ARG ILE ALA LEU VAL ARG PRO LEU GLU GLU LEU SEQRES 29 A 376 LEU GLU ALA ALA LYS ARG ILE ARG GLU ALA LEU ASP SEQRES 1 B 376 MET SER ARG VAL PRO GLU PRO SER VAL PHE LEU VAL VAL SEQRES 2 B 376 ASP GLU ALA LYS ARG LYS ALA ARG GLU ARG GLY VAL GLY SEQRES 3 B 376 LEU ILE ASP LEU SER ILE GLY SER THR ASP LEU PRO PRO SEQRES 4 B 376 PRO GLU ALA PRO LEU LYS ALA LEU ALA GLU ALA LEU ASN SEQRES 5 B 376 ASP PRO THR THR TYR GLY TYR CYS LEU LYS SER CYS THR SEQRES 6 B 376 LEU PRO PHE LEU GLU GLU ALA ALA ARG TRP TYR GLU GLY SEQRES 7 B 376 ARG TYR GLY VAL GLY LEU ASP PRO ARG ARG GLU ALA LEU SEQRES 8 B 376 ALA LEU ILE GLY SER GLN GLU GLY LEU ALA HIS LEU LEU SEQRES 9 B 376 LEU ALA LEU THR GLU PRO GLU ASP LEU LEU LEU LEU PRO SEQRES 10 B 376 GLU VAL ALA TYR PRO SER TYR PHE GLY ALA ALA ARG VAL SEQRES 11 B 376 ALA SER LEU ARG THR PHE LEU ILE PRO LEU ARG GLU ASP SEQRES 12 B 376 GLY LEU ALA ASP LEU LYS ALA VAL PRO GLU GLY VAL TRP SEQRES 13 B 376 ARG GLU ALA LYS VAL LEU LEU LEU ASN TYR PRO ASN ASN SEQRES 14 B 376 PRO THR GLY ALA VAL ALA ASP TRP GLY TYR PHE GLU GLU SEQRES 15 B 376 ALA LEU GLY LEU ALA ARG LYS HIS GLY LEU TRP LEU ILE SEQRES 16 B 376 HIS ASP ASN PRO TYR VAL ASP GLN VAL TYR GLU GLY GLU SEQRES 17 B 376 ALA PRO SER PRO LEU ALA LEU PRO GLY ALA LYS GLU ARG SEQRES 18 B 376 VAL VAL GLU LEU PHE SER LEU SER LYS SER TYR ASN LEU SEQRES 19 B 376 ALA GLY PHE ARG LEU GLY PHE ALA LEU GLY SER GLU GLU SEQRES 20 B 376 ALA LEU ALA ARG LEU GLU ARG VAL LYS GLY VAL ILE ASP SEQRES 21 B 376 PHE ASN GLN TYR ALA GLY VAL LEU ARG MET GLY VAL GLU SEQRES 22 B 376 ALA LEU LYS THR PRO LYS GLU VAL VAL ARG GLY TYR ALA SEQRES 23 B 376 ARG VAL TYR ARG GLU ARG ALA LEU GLY MET ALA GLU ALA SEQRES 24 B 376 LEU LYS GLY VAL LEU SER LEU LEU PRO PRO ARG ALA THR SEQRES 25 B 376 MET TYR LEU TRP GLY ARG LEU PRO GLU GLY VAL ASP ASP SEQRES 26 B 376 LEU GLU PHE GLY LEU ARG LEU VAL GLU ARG GLY VAL ALA SEQRES 27 B 376 LEU ALA PRO GLY ARG GLY PHE GLY PRO GLY GLY LYS GLY SEQRES 28 B 376 PHE VAL ARG ILE ALA LEU VAL ARG PRO LEU GLU GLU LEU SEQRES 29 B 376 LEU GLU ALA ALA LYS ARG ILE ARG GLU ALA LEU ASP HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 B 504 5 HET SO4 B 505 5 HET EPE A 501 15 HETNAM SO4 SULFATE ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 HOH *204(H2 O) HELIX 1 1 PRO A 7 ARG A 23 1 17 HELIX 2 2 PRO A 40 LEU A 51 1 12 HELIX 3 3 ASN A 52 TYR A 57 5 6 HELIX 4 4 LEU A 61 GLY A 81 1 21 HELIX 5 5 GLY A 95 THR A 108 1 14 HELIX 6 6 TYR A 121 ALA A 131 1 11 HELIX 7 7 ASP A 147 VAL A 151 5 5 HELIX 8 8 PRO A 152 GLU A 158 1 7 HELIX 9 9 ASP A 176 HIS A 190 1 15 HELIX 10 10 TYR A 200 VAL A 204 5 5 HELIX 11 11 SER A 211 LEU A 215 5 5 HELIX 12 12 GLY A 217 GLU A 220 5 4 HELIX 13 13 LEU A 228 TYR A 232 1 5 HELIX 14 14 LEU A 234 ARG A 238 5 5 HELIX 15 15 SER A 245 ASP A 260 1 16 HELIX 16 16 TYR A 264 LYS A 276 1 13 HELIX 17 17 PRO A 278 LYS A 301 1 24 HELIX 18 18 ASP A 324 ARG A 335 1 12 HELIX 19 19 ARG A 343 LYS A 350 5 8 HELIX 20 20 PRO A 360 ALA A 374 1 15 HELIX 21 21 VAL B 9 ARG B 23 1 15 HELIX 22 22 PRO B 40 ASN B 52 1 13 HELIX 23 23 ASP B 53 TYR B 57 5 5 HELIX 24 24 LEU B 61 GLY B 81 1 21 HELIX 25 25 GLY B 95 LEU B 107 1 13 HELIX 26 26 TYR B 121 ALA B 131 1 11 HELIX 27 27 ASP B 147 VAL B 151 5 5 HELIX 28 28 PRO B 152 GLU B 158 1 7 HELIX 29 29 ASP B 176 GLY B 191 1 16 HELIX 30 30 SER B 211 LEU B 215 5 5 HELIX 31 31 GLY B 217 GLU B 220 5 4 HELIX 32 32 LEU B 228 ASN B 233 1 6 HELIX 33 33 LEU B 234 ARG B 238 5 5 HELIX 34 34 SER B 245 VAL B 258 1 14 HELIX 35 35 TYR B 264 LYS B 276 1 13 HELIX 36 36 PRO B 278 ALA B 299 1 22 HELIX 37 37 ASP B 324 ARG B 335 1 12 HELIX 38 38 ARG B 343 LYS B 350 5 8 HELIX 39 39 PRO B 360 ALA B 374 1 15 SHEET 1 A 2 ILE A 28 ASP A 29 0 SHEET 2 A 2 VAL A 337 ALA A 338 1 O ALA A 338 N ILE A 28 SHEET 1 B 7 ALA A 90 LEU A 93 0 SHEET 2 B 7 GLY A 240 GLY A 244 -1 O ALA A 242 N LEU A 91 SHEET 3 B 7 VAL A 222 SER A 227 -1 N PHE A 226 O PHE A 241 SHEET 4 B 7 TRP A 193 ASP A 197 1 N HIS A 196 O VAL A 223 SHEET 5 B 7 ALA A 159 LEU A 164 1 N LEU A 162 O ILE A 195 SHEET 6 B 7 LEU A 113 PRO A 117 1 N LEU A 115 O LEU A 163 SHEET 7 B 7 ARG A 134 ILE A 138 1 O ILE A 138 N LEU A 116 SHEET 1 C 4 SER A 305 LEU A 306 0 SHEET 2 C 4 TYR A 314 ARG A 318 -1 O ARG A 318 N SER A 305 SHEET 3 C 4 PHE A 352 ALA A 356 -1 O ILE A 355 N LEU A 315 SHEET 4 C 4 ALA A 340 PRO A 341 -1 N ALA A 340 O ARG A 354 SHEET 1 D 2 ILE B 28 ASP B 29 0 SHEET 2 D 2 VAL B 337 ALA B 338 1 O ALA B 338 N ILE B 28 SHEET 1 E 7 ALA B 90 LEU B 93 0 SHEET 2 E 7 GLY B 240 GLY B 244 -1 O GLY B 240 N LEU B 93 SHEET 3 E 7 VAL B 222 SER B 227 -1 N GLU B 224 O LEU B 243 SHEET 4 E 7 TRP B 193 ASP B 197 1 N HIS B 196 O LEU B 225 SHEET 5 E 7 ALA B 159 LEU B 164 1 N LEU B 162 O ILE B 195 SHEET 6 E 7 LEU B 113 PRO B 117 1 N LEU B 115 O LEU B 163 SHEET 7 E 7 ARG B 134 ILE B 138 1 O ILE B 138 N LEU B 116 SHEET 1 F 4 SER B 305 LEU B 306 0 SHEET 2 F 4 TYR B 314 ARG B 318 -1 O ARG B 318 N SER B 305 SHEET 3 F 4 PHE B 352 ALA B 356 -1 O ILE B 355 N LEU B 315 SHEET 4 F 4 ALA B 340 PRO B 341 -1 N ALA B 340 O ARG B 354 SSBOND 1 CYS A 60 CYS A 64 1555 1555 2.04 SSBOND 2 CYS B 60 CYS B 64 1555 1555 2.03 CISPEP 1 TYR A 166 PRO A 167 0 -0.07 CISPEP 2 ASN A 169 PRO A 170 0 0.64 CISPEP 3 TYR B 166 PRO B 167 0 -0.10 CISPEP 4 ASN B 169 PRO B 170 0 0.58 SITE 1 AC1 5 GLU A 291 ARG A 292 PRO A 360 LEU A 361 SITE 2 AC1 5 GLU B 291 SITE 1 AC2 9 GLY A 95 SER A 96 GLN A 97 SER A 227 SITE 2 AC2 9 SER A 229 ARG A 238 EPE A 501 HOH A 601 SITE 3 AC2 9 TYR B 59 SITE 1 AC3 7 TYR A 59 GLY B 95 SER B 96 GLN B 97 SITE 2 AC3 7 SER B 227 SER B 229 ARG B 238 SITE 1 AC4 6 ILE B 32 GLY B 33 TYR B 121 ASN B 169 SITE 2 AC4 6 TYR B 314 ARG B 354 SITE 1 AC5 15 ILE A 32 GLY A 33 TYR A 121 TYR A 124 SITE 2 AC5 15 ASN A 169 ASP A 197 PRO A 199 TYR A 200 SITE 3 AC5 15 LYS A 230 TYR A 314 ARG A 354 SO4 A 503 SITE 4 AC5 15 HOH A 601 TYR B 59 PHE B 261 CRYST1 121.490 121.490 172.190 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008231 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005808 0.00000