PDB Short entry for 2DPI HEADER TRANSFERASE/DNA 12-MAY-06 2DPI TITLE TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3'; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*TP*(EDA)P*GP*GP*GP*TP*CP*CP*T)-3'; COMPND 7 CHAIN: T; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE IOTA; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RESIDUES 1-420; COMPND 13 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 14 EC: 2.7.7.7; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: RAD30 HOMOLOG B, ETA2; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BJ5464; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PBJ941 KEYWDS DNA DEPENDENT DNA POLYMERASE, ETHENODA ADDUCT, LESION BYPASS, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL REVDAT 5 25-OCT-23 2DPI 1 REMARK LINK REVDAT 4 13-JUL-11 2DPI 1 VERSN REVDAT 3 24-FEB-09 2DPI 1 VERSN REVDAT 2 18-JUL-06 2DPI 1 JRNL REVDAT 1 04-JUL-06 2DPI 0 JRNL AUTH D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL HOOGSTEEN BASE PAIR FORMATION PROMOTES SYNTHESIS OPPOSITE JRNL TITL 2 THE 1,N(6)-ETHENODEOXYADENOSINE LESION BY HUMAN DNA JRNL TITL 3 POLYMERASE IOTA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 619 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16819516 JRNL DOI 10.1038/NSMB1118 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 24063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2871 REMARK 3 NUCLEIC ACID ATOMS : 323 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.303 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3300 ; 0.046 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2891 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4522 ; 3.477 ; 2.113 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6773 ; 1.447 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 9.127 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.210 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3375 ; 0.019 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 699 ; 0.297 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3404 ; 0.272 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1903 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 134 ; 0.217 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.887 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.412 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.776 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1855 ; 1.853 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2990 ; 3.209 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1445 ; 4.380 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1532 ; 6.438 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 37 REMARK 3 RESIDUE RANGE : A 99 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2867 16.7309 5.8923 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 0.3604 REMARK 3 T33: 0.2754 T12: 0.0056 REMARK 3 T13: -0.0234 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.2882 L22: 0.5746 REMARK 3 L33: 1.7058 L12: 0.0838 REMARK 3 L13: -0.0272 L23: 0.2730 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.0210 S13: -0.0015 REMARK 3 S21: -0.0173 S22: -0.1056 S23: 0.0398 REMARK 3 S31: 0.0553 S32: 0.1888 S33: 0.0602 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1105 16.2545 23.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.3265 T22: 0.3343 REMARK 3 T33: 0.4326 T12: -0.1507 REMARK 3 T13: 0.0988 T23: -0.1084 REMARK 3 L TENSOR REMARK 3 L11: 2.5771 L22: 3.6522 REMARK 3 L33: 3.5548 L12: -1.7063 REMARK 3 L13: -0.0952 L23: 1.7910 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: 0.0023 S13: -0.3717 REMARK 3 S21: 0.2720 S22: -0.4002 S23: 0.7100 REMARK 3 S31: 0.3859 S32: -0.2925 S33: 0.2996 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4775 35.7110 -3.2113 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.2571 REMARK 3 T33: 0.5417 T12: 0.0210 REMARK 3 T13: -0.2338 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 4.0455 L22: 0.6815 REMARK 3 L33: 2.9714 L12: -0.5770 REMARK 3 L13: 3.3265 L23: 1.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.7012 S12: -0.0655 S13: 1.0160 REMARK 3 S21: -0.0937 S22: -0.1059 S23: -0.2360 REMARK 3 S31: -0.2231 S32: -0.1341 S33: 0.8071 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9848 41.4268 32.8813 REMARK 3 T TENSOR REMARK 3 T11: 0.4827 T22: 0.2155 REMARK 3 T33: 0.3738 T12: -0.3074 REMARK 3 T13: 0.3021 T23: -0.2529 REMARK 3 L TENSOR REMARK 3 L11: 3.3233 L22: 6.8926 REMARK 3 L33: 2.8478 L12: 1.9256 REMARK 3 L13: -1.7300 L23: -0.6399 REMARK 3 S TENSOR REMARK 3 S11: 1.0225 S12: -0.2849 S13: 0.5194 REMARK 3 S21: 1.1133 S22: -0.6459 S23: 0.8849 REMARK 3 S31: -0.3111 S32: 0.2989 S33: -0.3766 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 839 T 847 REMARK 3 RESIDUE RANGE : P 867 P 873 REMARK 3 RESIDUE RANGE : A 875 A 875 REMARK 3 RESIDUE RANGE : A 871 A 872 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3931 37.1291 17.2539 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.3163 REMARK 3 T33: 0.5152 T12: -0.1083 REMARK 3 T13: -0.0508 T23: -0.0478 REMARK 3 L TENSOR REMARK 3 L11: 1.6653 L22: 3.2885 REMARK 3 L33: -0.3294 L12: 0.5407 REMARK 3 L13: -1.3804 L23: -1.5992 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0748 S13: 0.7243 REMARK 3 S21: -0.0535 S22: -0.0312 S23: 0.6950 REMARK 3 S31: 0.0746 S32: 0.2020 S33: -0.0147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS REFINED ALSO WITH REMARK 3 CNS1.1 REMARK 4 REMARK 4 2DPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1000025689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26566 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 49.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 2ALZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 5K MME, 0.4M AMMONIUM SULFATE, REMARK 280 0.1M MES BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.40800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.70400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.55600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.85200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 169.26000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.40800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.70400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.85200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.55600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 169.26000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIZATION AS REPORTED IN 2AZL REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, T, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.07400 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 84.99866 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.85200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 HIS A 16 REMARK 465 ASP A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 LEU A 20 REMARK 465 PRO A 21 REMARK 465 THR A 22 REMARK 465 PRO A 23 REMARK 465 ASN A 24 REMARK 465 ALA A 25 REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 415 REMARK 465 LEU A 416 REMARK 465 ASN A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 LYS A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 VAL A 315 CG1 CG2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 350 OG REMARK 470 SER A 351 OG REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 355 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 367 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 379 CG1 CG2 REMARK 470 ILE A 386 CG1 CG2 CD1 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LEU A 405 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 348 OE2 GLU A 358 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DA P 867 O3' DT T 847 10665 0.70 REMARK 500 C5' DA P 867 O3' DT T 847 10665 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA P 867 C5' DA P 867 C4' 0.109 REMARK 500 DA P 867 C5 DA P 867 N7 -0.064 REMARK 500 DA P 867 O3' DG P 868 P 0.179 REMARK 500 DG P 868 C2' DG P 868 C1' 0.092 REMARK 500 DG P 868 C8 DG P 868 N9 0.043 REMARK 500 DG P 869 C5' DG P 869 C4' 0.047 REMARK 500 DG P 869 N3 DG P 869 C4 -0.048 REMARK 500 DA P 870 P DA P 870 O5' 0.068 REMARK 500 DA P 870 C2' DA P 870 C1' 0.081 REMARK 500 DA P 870 O4' DA P 870 C4' 0.074 REMARK 500 DC P 871 P DC P 871 O5' 0.068 REMARK 500 DC P 871 C2' DC P 871 C1' 0.074 REMARK 500 DC P 871 O4' DC P 871 C1' -0.091 REMARK 500 DC P 871 O3' DC P 871 C3' -0.095 REMARK 500 DC P 872 P DC P 872 O5' 0.073 REMARK 500 DC P 872 O4' DC P 872 C4' 0.091 REMARK 500 DC P 872 O3' DC P 872 C3' -0.092 REMARK 500 DC P 872 C4 DC P 872 C5 -0.053 REMARK 500 DC P 872 O3' DOC P 873 P -0.108 REMARK 500 DT T 839 O3' DT T 839 C3' -0.132 REMARK 500 DT T 839 C2 DT T 839 N3 0.082 REMARK 500 DT T 839 O3' EDA T 840 P -0.267 REMARK 500 EDA T 840 O3' DG T 841 P -0.286 REMARK 500 DG T 841 P DG T 841 O5' 0.107 REMARK 500 DG T 842 C6 DG T 842 O6 -0.067 REMARK 500 DG T 843 P DG T 843 OP2 -0.158 REMARK 500 DG T 843 P DG T 843 O5' 0.152 REMARK 500 DG T 843 O5' DG T 843 C5' -0.203 REMARK 500 DG T 843 C3' DG T 843 C2' -0.090 REMARK 500 DG T 843 O4' DG T 843 C1' -0.113 REMARK 500 DG T 843 N1 DG T 843 C2 0.074 REMARK 500 DG T 843 C6 DG T 843 N1 0.042 REMARK 500 DG T 843 C5 DG T 843 N7 -0.049 REMARK 500 DT T 844 O3' DT T 844 C3' -0.133 REMARK 500 DT T 844 C2 DT T 844 N3 0.082 REMARK 500 DT T 844 O3' DC T 845 P 0.087 REMARK 500 DC T 845 P DC T 845 O5' 0.070 REMARK 500 DC T 845 C4' DC T 845 C3' 0.106 REMARK 500 DC T 845 C2' DC T 845 C1' 0.097 REMARK 500 DC T 845 N1 DC T 845 C6 -0.042 REMARK 500 DC T 846 C2 DC T 846 N3 0.052 REMARK 500 DT T 847 C5' DT T 847 C4' 0.064 REMARK 500 DT T 847 C4' DT T 847 C3' 0.080 REMARK 500 DT T 847 O3' DT T 847 C3' 0.284 REMARK 500 DT T 847 C6 DT T 847 N1 -0.045 REMARK 500 PHE A 38 CB PHE A 38 CG -0.149 REMARK 500 MET A 44 SD MET A 44 CE -0.435 REMARK 500 SER A 46 CB SER A 46 OG -0.084 REMARK 500 ARG A 103 CZ ARG A 103 NH2 0.139 REMARK 500 MET A 105 CG MET A 105 SD 0.259 REMARK 500 REMARK 500 THIS ENTRY HAS 89 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA P 867 O5' - C5' - C4' ANGL. DEV. = 28.7 DEGREES REMARK 500 DA P 867 O4' - C4' - C3' ANGL. DEV. = -10.6 DEGREES REMARK 500 DA P 867 C5' - C4' - C3' ANGL. DEV. = 10.3 DEGREES REMARK 500 DA P 867 C1' - O4' - C4' ANGL. DEV. = 9.0 DEGREES REMARK 500 DA P 867 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DA P 867 O4' - C1' - N9 ANGL. DEV. = 10.9 DEGREES REMARK 500 DA P 867 C8 - N9 - C4 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG P 868 C3' - C2' - C1' ANGL. DEV. = -6.5 DEGREES REMARK 500 DG P 868 O4' - C1' - C2' ANGL. DEV. = 5.8 DEGREES REMARK 500 DG P 868 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG P 868 N9 - C4 - C5 ANGL. DEV. = -2.4 DEGREES REMARK 500 DG P 868 N1 - C6 - O6 ANGL. DEV. = 6.4 DEGREES REMARK 500 DG P 868 C5 - C6 - O6 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG P 869 O4' - C1' - N9 ANGL. DEV. = 12.2 DEGREES REMARK 500 DG P 869 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG P 869 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG P 869 C8 - N9 - C4 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG P 869 N9 - C4 - C5 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG P 869 N3 - C4 - N9 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG P 869 N3 - C2 - N2 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG P 869 N1 - C6 - O6 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG P 869 C3' - O3' - P ANGL. DEV. = -10.5 DEGREES REMARK 500 DA P 870 O3' - P - OP2 ANGL. DEV. = 11.2 DEGREES REMARK 500 DA P 870 O5' - P - OP2 ANGL. DEV. = -16.8 DEGREES REMARK 500 DA P 870 O4' - C4' - C3' ANGL. DEV. = 14.6 DEGREES REMARK 500 DA P 870 C1' - O4' - C4' ANGL. DEV. = -9.8 DEGREES REMARK 500 DA P 870 C4' - C3' - C2' ANGL. DEV. = -8.9 DEGREES REMARK 500 DA P 870 O4' - C1' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DA P 870 O4' - C1' - N9 ANGL. DEV. = 9.4 DEGREES REMARK 500 DA P 870 N1 - C2 - N3 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA P 870 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA P 870 C5 - N7 - C8 ANGL. DEV. = -3.6 DEGREES REMARK 500 DC P 871 O3' - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DC P 871 O3' - P - OP1 ANGL. DEV. = 8.1 DEGREES REMARK 500 DC P 871 OP1 - P - OP2 ANGL. DEV. = -13.3 DEGREES REMARK 500 DC P 871 O5' - P - OP1 ANGL. DEV. = -7.2 DEGREES REMARK 500 DC P 871 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DC P 871 O4' - C4' - C3' ANGL. DEV. = 7.1 DEGREES REMARK 500 DC P 871 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC P 872 O4' - C4' - C3' ANGL. DEV. = 7.1 DEGREES REMARK 500 DC P 872 C4' - C3' - O3' ANGL. DEV. = 13.8 DEGREES REMARK 500 DC P 872 C3' - C2' - C1' ANGL. DEV. = 9.1 DEGREES REMARK 500 DC P 872 O4' - C1' - N1 ANGL. DEV. = -4.8 DEGREES REMARK 500 DT T 839 O5' - C5' - C4' ANGL. DEV. = -13.7 DEGREES REMARK 500 DT T 839 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT T 839 N1 - C2 - N3 ANGL. DEV. = 6.2 DEGREES REMARK 500 DT T 839 C2 - N3 - C4 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT T 839 N1 - C2 - O2 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT T 839 C6 - C5 - C7 ANGL. DEV. = -5.4 DEGREES REMARK 500 EDA T 840 O3' - P - OP2 ANGL. DEV. = 17.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 126 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 37 57.30 27.96 REMARK 500 ASP A 52 0.39 56.92 REMARK 500 LYS A 60 -126.57 61.25 REMARK 500 ASP A 83 -37.31 -36.76 REMARK 500 CYS A 88 84.41 -162.82 REMARK 500 SER A 145 67.63 -67.88 REMARK 500 ASP A 146 -56.22 -172.67 REMARK 500 PRO A 215 -75.39 -63.11 REMARK 500 ALA A 252 -25.93 -38.10 REMARK 500 LYS A 271 53.07 -94.62 REMARK 500 GLU A 272 -43.72 -160.53 REMARK 500 ASP A 289 103.99 -167.18 REMARK 500 PHE A 308 104.84 174.02 REMARK 500 LYS A 310 -11.25 102.93 REMARK 500 SER A 312 75.04 -103.48 REMARK 500 GLU A 314 52.95 146.29 REMARK 500 VAL A 315 -56.67 156.51 REMARK 500 LYS A 318 -41.41 -132.50 REMARK 500 CYS A 333 -76.20 -36.56 REMARK 500 ARG A 337 144.41 -24.73 REMARK 500 SER A 350 -89.20 -135.59 REMARK 500 GLU A 352 83.35 -60.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 213 LYS A 214 -139.02 REMARK 500 SER A 313 GLU A 314 146.29 REMARK 500 MET A 380 THR A 381 -144.82 REMARK 500 MET A 383 VAL A 384 145.48 REMARK 500 LEU A 390 PHE A 391 148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG P 868 0.08 SIDE CHAIN REMARK 500 DC P 871 0.06 SIDE CHAIN REMARK 500 DG T 843 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 299 -10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 871 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD2 REMARK 620 2 LEU A 35 O 86.0 REMARK 620 3 ASP A 126 OD1 88.2 87.5 REMARK 620 4 DCP A 875 O1G 96.2 95.0 175.1 REMARK 620 5 DCP A 875 O2B 171.4 89.4 84.2 91.5 REMARK 620 6 DCP A 875 O1A 104.5 162.2 78.7 98.0 78.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 34 OD2 47.7 REMARK 620 3 GLU A 127 OE2 96.2 115.9 REMARK 620 4 DCP A 875 O1A 129.9 87.3 127.3 REMARK 620 5 HOH A 932 O 69.9 86.4 135.2 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 875 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T3N RELATED DB: PDB REMARK 900 RELATED ID: 2ALZ RELATED DB: PDB REMARK 900 RELATED ID: 2DPJ RELATED DB: PDB DBREF 2DPI A 1 420 UNP Q9UNA4 POLI_HUMAN 1 420 DBREF 2DPI P 867 873 PDB 2DPI 2DPI 867 873 DBREF 2DPI T 839 847 PDB 2DPI 2DPI 839 847 SEQRES 1 P 7 DA DG DG DA DC DC DOC SEQRES 1 T 9 DT EDA DG DG DG DT DC DC DT SEQRES 1 A 420 MET GLU LEU ALA ASP VAL GLY ALA ALA ALA SER SER GLN SEQRES 2 A 420 GLY VAL HIS ASP GLN VAL LEU PRO THR PRO ASN ALA SER SEQRES 3 A 420 SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS PHE TYR SEQRES 4 A 420 ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU LYS ASP SEQRES 5 A 420 LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL VAL THR SEQRES 6 A 420 CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS LYS LEU SEQRES 7 A 420 MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO GLN LEU SEQRES 8 A 420 VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR ARG GLU SEQRES 9 A 420 MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU PHE SER SEQRES 10 A 420 PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN PHE VAL SEQRES 11 A 420 ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN GLN LEU SEQRES 12 A 420 GLN SER ASP GLU LEU SER ALA VAL THR VAL SER GLY HIS SEQRES 13 A 420 VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP VAL LEU SEQRES 14 A 420 HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA ALA GLU SEQRES 15 A 420 MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU THR GLY SEQRES 16 A 420 CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA LYS LEU SEQRES 17 A 420 VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR VAL LEU SEQRES 18 A 420 LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER LEU ASN SEQRES 19 A 420 HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS THR ALA SEQRES 20 A 420 LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL ARG ASP SEQRES 21 A 420 LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS GLU LEU SEQRES 22 A 420 GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SER PHE SEQRES 23 A 420 GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY PRO PRO SEQRES 24 A 420 GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS CYS SER SEQRES 25 A 420 SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU LEU LEU SEQRES 26 A 420 ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY ARG LYS SEQRES 27 A 420 PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SER SER SEQRES 28 A 420 GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS PRO ILE SEQRES 29 A 420 PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY ASN TYR SEQRES 30 A 420 ASP VAL MET THR PRO MET VAL ASP ILE LEU MET LYS LEU SEQRES 31 A 420 PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE HIS LEU SEQRES 32 A 420 THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS ALA LEU SEQRES 33 A 420 ASN THR ALA LYS MODRES 2DPI DOC P 873 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2DPI EDA T 840 DA HET DOC P 873 18 HET EDA T 840 23 HET MG A 871 1 HET MG A 872 1 HET DCP A 875 28 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM EDA 3-[2-DEOXY-RIBOFURANOSYL]-3H-1,3,4,5A,8-PENTAAZA-AS- HETNAM 2 EDA INDACENE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 1 DOC C9 H14 N3 O6 P FORMUL 2 EDA C12 H14 N5 O6 P FORMUL 4 MG 2(MG 2+) FORMUL 6 DCP C9 H16 N3 O13 P3 FORMUL 7 HOH *122(H2 O) HELIX 1 1 CYS A 37 ASN A 47 1 11 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASN A 67 LEU A 73 1 7 HELIX 4 4 VAL A 81 GLU A 86 1 6 HELIX 5 5 LEU A 99 SER A 117 1 19 HELIX 6 6 LEU A 132 LEU A 143 1 12 HELIX 7 7 ASN A 159 GLN A 161 5 3 HELIX 8 8 ASP A 167 GLY A 192 1 26 HELIX 9 9 ASN A 202 GLY A 211 1 10 HELIX 10 10 LEU A 222 GLU A 224 5 3 HELIX 11 11 SER A 225 LEU A 233 1 9 HELIX 12 12 HIS A 235 ILE A 239 5 5 HELIX 13 13 THR A 246 LEU A 253 1 8 HELIX 14 14 SER A 257 PHE A 264 1 8 HELIX 15 15 SER A 265 GLU A 270 1 6 HELIX 16 16 GLY A 274 PHE A 286 1 13 HELIX 17 17 LYS A 318 GLY A 336 1 19 HELIX 18 18 PRO A 365 SER A 366 5 2 HELIX 19 19 VAL A 368 GLN A 370 5 3 HELIX 20 20 MET A 380 ASP A 385 1 6 HELIX 21 21 LEU A 387 MET A 388 5 2 HELIX 22 22 LEU A 390 ARG A 392 5 3 SHEET 1 A 6 VAL A 120 LEU A 123 0 SHEET 2 A 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 A 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 A 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 A 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 A 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 B 4 MET A 79 ASN A 80 0 SHEET 2 B 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 B 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 B 4 VAL A 92 ASN A 95 1 O VAL A 94 N GLN A 58 SHEET 1 C 4 SER A 301 GLU A 305 0 SHEET 2 C 4 SER A 407 CYS A 411 -1 O PHE A 410 N PHE A 302 SHEET 3 C 4 THR A 341 ILE A 346 -1 N THR A 341 O CYS A 411 SHEET 4 C 4 GLU A 358 PRO A 363 -1 O CYS A 362 N VAL A 342 LINK O3' DC P 872 P DOC P 873 1555 1555 1.50 LINK O3' DT T 839 P EDA T 840 1555 1555 1.34 LINK O3' EDA T 840 P DG T 841 1555 1555 1.32 LINK OD2 ASP A 34 MG MG A 871 1555 1555 2.31 LINK OD1 ASP A 34 MG MG A 872 1555 1555 2.53 LINK OD2 ASP A 34 MG MG A 872 1555 1555 2.91 LINK O LEU A 35 MG MG A 871 1555 1555 2.26 LINK OD1 ASP A 126 MG MG A 871 1555 1555 2.31 LINK OE2 GLU A 127 MG MG A 872 1555 1555 2.43 LINK MG MG A 871 O1G DCP A 875 1555 1555 2.33 LINK MG MG A 871 O2B DCP A 875 1555 1555 2.16 LINK MG MG A 871 O1A DCP A 875 1555 1555 2.31 LINK MG MG A 872 O1A DCP A 875 1555 1555 2.36 LINK MG MG A 872 O HOH A 932 1555 1555 2.80 SITE 1 AC1 5 ASP A 34 LEU A 35 ASP A 126 MG A 872 SITE 2 AC1 5 DCP A 875 SITE 1 AC2 6 ASP A 34 ASP A 126 GLU A 127 MG A 871 SITE 2 AC2 6 DCP A 875 HOH A 932 SITE 1 AC3 21 ASP A 34 LEU A 35 ASP A 36 CYS A 37 SITE 2 AC3 21 PHE A 38 TYR A 39 VAL A 64 THR A 65 SITE 3 AC3 21 TYR A 68 ARG A 71 LYS A 77 ASP A 126 SITE 4 AC3 21 LYS A 214 MG A 871 MG A 872 HOH A 929 SITE 5 AC3 21 HOH A 932 DOC P 873 EDA T 840 DG T 841 SITE 6 AC3 21 HOH T 903 CRYST1 98.148 98.148 203.112 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010189 0.005882 0.000000 0.00000 SCALE2 0.000000 0.011765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004923 0.00000