PDB Short entry for 2DRE HEADER PLANT PROTEIN 08-JUN-06 2DRE TITLE CRYSTAL STRUCTURE OF WATER-SOLUBLE CHLOROPHYLL PROTEIN FROM TITLE 2 LEPIDIUM VIRGINICUM AT 2.00 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: WATER-SOLUBLE CHLOROPHYLL PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 1-180 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPIDIUM VIRGINICUM; SOURCE 3 ORGANISM_TAXID: 59292; SOURCE 4 TISSUE: LEAF KEYWDS BETA-TREFOIL, TETRAMER, PLANT, LEPIDIUM VIRGINICUM, KEYWDS 2 CHLOROPHYLL, WATER-SOLUBLE CHLOROPHYLL PROTEIN, SINGLET KEYWDS 3 OXYGEN, PHOTOOXIDATION, CHLOROPHYLL CARRIER, KUNITZ (STI) KEYWDS 4 INHIBITORS, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.HORIGOME,H.SATOH,N.ITOH,K.MITSUNAGA,I.OONISHI,A.NAKAGAWA, AUTHOR 2 A.UCHIDA REVDAT 2 24-FEB-09 2DRE 1 VERSN REVDAT 1 26-DEC-06 2DRE 0 JRNL AUTH D.HORIGOME,H.SATOH,N.ITOH,K.MITSUNAGA,I.OONISHI, JRNL AUTH 2 A.NAKAGAWA,A.UCHIDA JRNL TITL STRUCTURAL MECHANISM AND PHOTOPROTECTIVE FUNCTION JRNL TITL 2 OF WATER-SOLUBLE CHLOROPHYLL-BINDING PROTEIN. JRNL REF J.BIOL.CHEM. V. 282 6525 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17170107 JRNL DOI 10.1074/JBC.M609458200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.SATOH,A.UCHIDA,K.NAKAYAMA,M.OKADA REMARK 1 TITL WATER-SOLUBLE CHLOROPHYLL PROTEIN IN BRASSICACEAE REMARK 1 TITL 2 PLANTS IS A STRESS-INDUCED CHLOROPHYLL-BINDING REMARK 1 TITL 3 PROTEIN REMARK 1 REF PLANT CELL.PHYSIOL. V. 42 906 2001 REMARK 1 REFN ISSN 0032-0781 REMARK 1 PMID 11577184 REMARK 1 DOI 10.1093/PCP/PCE117 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.MURATA,R.ITOH,E.YAKUSHIJI REMARK 1 TITL CRYSTALLIZATION OF WATER-SOLUBLE REMARK 1 TITL 2 CHLOROPHYLL-PROTEINS FROM LEPIDIUM VIRGINICUM REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V. 593 167 1980 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 7426644 REMARK 1 DOI 10.1016/0005-2728(80)90018-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1987876.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 50390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2489 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7825 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 389 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5353 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 260 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.31000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : 2.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.30 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.37 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 53.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CLA_CNS_PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : CLA_CNS_TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ALL OF THE FOUR CHLOROPHYLLS IN THE REMARK 3 ASYMMETRIC UNIT WERE IDENTIFIED AS CHLOROPHYLL-A. REMARK 4 REMARK 4 2DRE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-06. REMARK 100 THE RCSB ID CODE IS RCSB025754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : TRIANGULAR SI(111) WITH AN REMARK 200 ASYMMETRIC ANGLE OF 7.8 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50390 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : 0.49400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM/POTASSIUM PHOSPHATE, REMARK 280 3.2M AMMONIUM SULFATE, 5% SUCROSE, PH 6.00, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.94000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.94000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 ASP A 163 REMARK 465 ASP A 164 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 ASP A 167 REMARK 465 GLU A 168 REMARK 465 THR A 180 REMARK 465 ILE B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 465 TYR B 139 REMARK 465 ASP B 140 REMARK 465 ASN B 141 REMARK 465 THR B 180 REMARK 465 ILE C 1 REMARK 465 ASN C 2 REMARK 465 THR C 180 REMARK 465 ILE D 1 REMARK 465 ASN D 2 REMARK 465 THR D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 67 CD PRO A 67 N -0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 69 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 ASN A 141 CA - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 ASN B 29 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG B 138 N - CA - C ANGL. DEV. = 25.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 3 122.30 179.01 REMARK 500 ASP A 28 37.54 -68.65 REMARK 500 ASN A 29 -101.91 -59.68 REMARK 500 PRO A 67 -78.98 -50.59 REMARK 500 SER A 68 44.15 -84.53 REMARK 500 SER A 69 -48.24 -142.73 REMARK 500 SER A 70 80.61 36.62 REMARK 500 GLU A 71 39.77 -148.65 REMARK 500 PRO A 93 42.63 -84.01 REMARK 500 SER A 103 59.33 -101.66 REMARK 500 ASN A 141 98.44 92.56 REMARK 500 PRO B 25 106.30 -32.67 REMARK 500 ALA B 26 38.87 -83.62 REMARK 500 SER B 70 27.26 -146.56 REMARK 500 ASP B 101 85.46 -66.19 REMARK 500 SER B 102 -41.50 -28.55 REMARK 500 SER B 104 -178.44 155.74 REMARK 500 TYR B 134 -163.94 -126.38 REMARK 500 ASP B 162 -175.51 -59.38 REMARK 500 ASP B 163 30.56 -44.13 REMARK 500 SER C 69 50.53 -103.80 REMARK 500 SER C 70 -78.59 -95.94 REMARK 500 ASN C 132 17.16 47.99 REMARK 500 ASN C 141 -70.39 -161.24 REMARK 500 ASN C 161 -171.90 -67.77 REMARK 500 ASP C 164 34.42 -150.52 REMARK 500 ASP D 9 -169.79 -76.64 REMARK 500 GLU D 18 19.32 54.08 REMARK 500 SER D 27 -144.13 -67.02 REMARK 500 ASP D 28 104.54 -38.61 REMARK 500 ASN D 30 36.91 -145.18 REMARK 500 SER D 69 99.41 -50.81 REMARK 500 SER D 70 8.92 -150.95 REMARK 500 GLU D 71 16.88 -146.57 REMARK 500 ASN D 78 56.63 32.28 REMARK 500 PRO D 93 41.29 -80.42 REMARK 500 ASN D 141 48.11 -142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA B 1001 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA C 1001 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA D 1001 DBREF 2DRE A 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 2DRE B 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 2DRE C 1 180 UNP O04797 O04797_LEPVR 27 206 DBREF 2DRE D 1 180 UNP O04797 O04797_LEPVR 27 206 SEQRES 1 A 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 A 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 A 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 A 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 A 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 A 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 A 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP LEU SEQRES 8 A 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 A 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 A 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 A 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 A 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 A 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 A 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 B 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 B 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 B 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 B 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 B 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 B 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 B 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP LEU SEQRES 8 B 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 B 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 B 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 B 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 B 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 B 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 B 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 C 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 C 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 C 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 C 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 C 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 C 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 C 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP LEU SEQRES 8 C 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 C 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 C 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 C 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 C 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 C 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 C 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR SEQRES 1 D 180 ILE ASN ASP GLU GLU PRO VAL LYS ASP THR ASN GLY ASN SEQRES 2 D 180 PRO LEU LYS ILE GLU THR ARG TYR PHE ILE GLN PRO ALA SEQRES 3 D 180 SER ASP ASN ASN GLY GLY GLY LEU VAL PRO ALA ASN VAL SEQRES 4 D 180 ASP LEU SER HIS LEU CYS PRO LEU GLY ILE VAL ARG THR SEQRES 5 D 180 SER LEU PRO TYR GLN PRO GLY LEU PRO VAL THR ILE SER SEQRES 6 D 180 THR PRO SER SER SER GLU GLY ASN ASP VAL LEU THR ASN SEQRES 7 D 180 THR ASN ILE ALA ILE THR PHE ASP ALA PRO ILE TRP LEU SEQRES 8 D 180 CYS PRO SER SER LYS THR TRP THR VAL ASP SER SER SER SEQRES 9 D 180 GLU GLU LYS TYR ILE ILE THR GLY GLY ASP PRO LYS SER SEQRES 10 D 180 GLY GLU SER PHE PHE ARG ILE GLU LYS TYR GLY ASN GLY SEQRES 11 D 180 LYS ASN THR TYR LYS LEU VAL ARG TYR ASP ASN GLY GLU SEQRES 12 D 180 GLY LYS SER VAL GLY SER THR LYS SER LEU TRP GLY PRO SEQRES 13 D 180 ALA LEU VAL LEU ASN ASP ASP ASP ASP SER ASP GLU ASN SEQRES 14 D 180 ALA PHE PRO ILE LYS PHE ARG GLU VAL ASP THR HET CLA A1001 65 HET CLA B1001 65 HET CLA C1001 65 HET CLA D1001 65 HETNAM CLA CHLOROPHYLL A FORMUL 5 CLA 4(C55 H72 MG N4 O5 2+) FORMUL 9 HOH *555(H2 O) HELIX 1 1 SER A 117 PHE A 121 5 5 HELIX 2 2 SER B 117 PHE B 121 5 5 HELIX 3 3 SER D 117 PHE D 121 5 5 HELIX 4 4 SER D 166 ALA D 170 5 5 SHEET 1 A 2 TYR A 21 PRO A 25 0 SHEET 2 A 2 ILE A 173 GLU A 177 -1 O ARG A 176 N PHE A 22 SHEET 1 B 2 LEU A 34 ALA A 37 0 SHEET 2 B 2 GLY A 48 ARG A 51 -1 O VAL A 50 N VAL A 35 SHEET 1 C 2 VAL A 62 SER A 65 0 SHEET 2 C 2 ALA A 82 PHE A 85 -1 O ALA A 82 N SER A 65 SHEET 1 D 2 THR A 99 VAL A 100 0 SHEET 2 D 2 ILE A 109 ILE A 110 -1 O ILE A 110 N THR A 99 SHEET 1 E 4 ARG A 123 LYS A 126 0 SHEET 2 E 4 TYR A 134 TYR A 139 -1 O VAL A 137 N ARG A 123 SHEET 3 E 4 GLY A 144 LYS A 151 -1 O LYS A 145 N ARG A 138 SHEET 4 E 4 PRO A 156 LEU A 160 -1 O VAL A 159 N GLY A 148 SHEET 1 F 4 ALA B 82 PHE B 85 0 SHEET 2 F 4 PRO B 61 SER B 65 -1 N SER B 65 O ALA B 82 SHEET 3 F 4 TYR B 21 PRO B 25 -1 N TYR B 21 O VAL B 62 SHEET 4 F 4 ILE B 173 GLU B 177 -1 O LYS B 174 N GLN B 24 SHEET 1 G 2 LEU B 34 ALA B 37 0 SHEET 2 G 2 GLY B 48 ARG B 51 -1 O VAL B 50 N VAL B 35 SHEET 1 H 2 THR B 99 VAL B 100 0 SHEET 2 H 2 ILE B 109 ILE B 110 -1 O ILE B 110 N THR B 99 SHEET 1 I 2 ARG B 123 LYS B 126 0 SHEET 2 I 2 TYR B 134 VAL B 137 -1 O LYS B 135 N GLU B 125 SHEET 1 J 2 VAL B 147 LYS B 151 0 SHEET 2 J 2 PRO B 156 LEU B 160 -1 O VAL B 159 N GLY B 148 SHEET 1 K 2 TYR C 21 PRO C 25 0 SHEET 2 K 2 ILE C 173 GLU C 177 -1 O ARG C 176 N PHE C 22 SHEET 1 L 2 LEU C 34 ALA C 37 0 SHEET 2 L 2 GLY C 48 ARG C 51 -1 O VAL C 50 N VAL C 35 SHEET 1 M 6 VAL C 62 SER C 65 0 SHEET 2 M 6 ASN C 80 PHE C 85 -1 O THR C 84 N THR C 63 SHEET 3 M 6 PHE C 121 LYS C 126 -1 O PHE C 122 N ILE C 81 SHEET 4 M 6 TYR C 134 TYR C 139 -1 O LYS C 135 N GLU C 125 SHEET 5 M 6 GLY C 144 SER C 152 -1 O VAL C 147 N LEU C 136 SHEET 6 M 6 GLY C 155 LEU C 160 -1 O ALA C 157 N THR C 150 SHEET 1 N 2 THR C 99 VAL C 100 0 SHEET 2 N 2 ILE C 109 ILE C 110 -1 O ILE C 110 N THR C 99 SHEET 1 O 4 ALA D 82 PHE D 85 0 SHEET 2 O 4 VAL D 62 SER D 65 -1 N SER D 65 O ALA D 82 SHEET 3 O 4 ARG D 20 PRO D 25 -1 N TYR D 21 O VAL D 62 SHEET 4 O 4 ILE D 173 GLU D 177 -1 O ARG D 176 N PHE D 22 SHEET 1 P 2 LEU D 34 ALA D 37 0 SHEET 2 P 2 GLY D 48 ARG D 51 -1 O VAL D 50 N VAL D 35 SHEET 1 Q 2 THR D 97 VAL D 100 0 SHEET 2 Q 2 ILE D 109 GLY D 113 -1 O GLY D 113 N THR D 97 SHEET 1 R 4 ARG D 123 LYS D 126 0 SHEET 2 R 4 TYR D 134 TYR D 139 -1 O LYS D 135 N GLU D 125 SHEET 3 R 4 GLY D 144 SER D 152 -1 O VAL D 147 N LEU D 136 SHEET 4 R 4 GLY D 155 LEU D 160 -1 O VAL D 159 N GLY D 148 SSBOND 1 CYS A 45 CYS A 92 1555 1555 2.03 SSBOND 2 CYS B 45 CYS B 92 1555 1555 2.04 SSBOND 3 CYS C 45 CYS C 92 1555 1555 2.04 SSBOND 4 CYS D 45 CYS D 92 1555 1555 2.04 LINK MG CLA A1001 O PRO A 36 1555 1555 2.14 LINK MG CLA B1001 O PRO B 36 1555 1555 2.12 LINK MG CLA C1001 O PRO C 36 1555 1555 2.13 LINK MG CLA D1001 O PRO D 36 1555 1555 2.12 CISPEP 1 CYS A 45 PRO A 46 0 -0.26 CISPEP 2 CYS B 45 PRO B 46 0 -0.01 CISPEP 3 CYS C 45 PRO C 46 0 -0.24 CISPEP 4 CYS D 45 PRO D 46 0 -0.28 SITE 1 AC1 20 VAL A 35 PRO A 36 ALA A 37 ASN A 38 SITE 2 AC1 20 LEU A 47 THR A 52 SER A 53 LEU A 54 SITE 3 AC1 20 GLN A 57 ILE A 89 TRP A 90 LEU A 91 SITE 4 AC1 20 TRP A 154 GLN B 57 ILE B 89 CLA B1001 SITE 5 AC1 20 HOH B1023 LEU C 44 LEU D 44 CLA D1001 SITE 1 AC2 25 LEU A 44 LEU A 54 GLN A 57 ILE A 89 SITE 2 AC2 25 CLA A1001 HOH A1030 VAL B 35 PRO B 36 SITE 3 AC2 25 ALA B 37 ASN B 38 LEU B 47 THR B 52 SITE 4 AC2 25 SER B 53 LEU B 54 GLN B 57 ILE B 89 SITE 5 AC2 25 LEU B 91 TRP B 154 LEU C 44 CLA C1001 SITE 6 AC2 25 LEU D 41 LEU D 44 LEU D 153 TRP D 154 SITE 7 AC2 25 CLA D1001 SITE 1 AC3 23 ASP A 40 LEU A 41 HIS A 43 LEU A 44 SITE 2 AC3 23 LEU B 44 CLA B1001 VAL C 35 PRO C 36 SITE 3 AC3 23 ASN C 38 LEU C 47 THR C 52 SER C 53 SITE 4 AC3 23 LEU C 54 GLN C 57 LEU C 60 ILE C 89 SITE 5 AC3 23 TRP C 90 LEU C 91 TRP C 154 GLN D 57 SITE 6 AC3 23 ILE D 89 CLA D1001 HOH D1020 SITE 1 AC4 22 LEU A 44 CLA A1001 ASN B 38 LEU B 41 SITE 2 AC4 22 TRP B 154 CLA B1001 GLN C 57 ILE C 89 SITE 3 AC4 22 CLA C1001 HOH C1034 VAL D 35 PRO D 36 SITE 4 AC4 22 ALA D 37 ASN D 38 LEU D 47 THR D 52 SITE 5 AC4 22 SER D 53 LEU D 54 ILE D 89 TRP D 90 SITE 6 AC4 22 LEU D 91 TRP D 154 CRYST1 73.060 82.730 121.880 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008205 0.00000