PDB Short entry for 2DWQ HEADER HYDROLASE 16-AUG-06 2DWQ TITLE THERMUS THERMOPHILUS YCHF GTP-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS GTP-BINDING, SIGNAL TRANSDUCTION, TGS DOMAIN, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KUKIMOTO-NIINO,K.MURAYAMA,M.SHOROUZU,S.KURAMITSU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2DWQ 1 VERSN REVDAT 2 24-FEB-09 2DWQ 1 VERSN REVDAT 1 16-FEB-07 2DWQ 0 JRNL AUTH M.KUKIMOTO-NIINO,K.MURAYAMA,M.SHIROUZU,S.KURAMITSU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL THERMUS THERMOPHILUS YCHF GTP-BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 716396.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 18991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1872 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1718 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 206 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : -0.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.38000 REMARK 3 B22 (A**2) : 6.03000 REMARK 3 B33 (A**2) : -19.41000 REMARK 3 B12 (A**2) : -20.79000 REMARK 3 B13 (A**2) : 7.79000 REMARK 3 B23 (A**2) : -2.18000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.43 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 32.23 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB025937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 1.830 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0465 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.419 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DBY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M COBALTOUS CHLORIDE, 0.1M SODIUM REMARK 280 ACETATE, 1M 1,6 HEXANEDIOL, 4% ACETONE, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 30 REMARK 465 TYR A 31 REMARK 465 PRO A 32 REMARK 465 PHE A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 114 REMARK 465 VAL A 115 REMARK 465 VAL A 116 REMARK 465 HIS A 117 REMARK 465 VAL A 118 REMARK 465 MET A 119 REMARK 465 GLY A 120 REMARK 465 ARG A 121 REMARK 465 VAL A 122 REMARK 465 MET B 1 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 TYR B 31 REMARK 465 PRO B 32 REMARK 465 PHE B 33 REMARK 465 ALA B 34 REMARK 465 THR B 35 REMARK 465 ILE B 36 REMARK 465 ASP B 37 REMARK 465 LYS B 81 REMARK 465 GLY B 82 REMARK 465 ALA B 83 REMARK 465 HIS B 84 REMARK 465 LYS B 85 REMARK 465 GLY B 86 REMARK 465 GLU B 87 REMARK 465 GLY B 88 REMARK 465 LEU B 89 REMARK 465 GLY B 90 REMARK 465 ASP B 112 REMARK 465 PRO B 113 REMARK 465 ASP B 114 REMARK 465 VAL B 115 REMARK 465 VAL B 116 REMARK 465 HIS B 117 REMARK 465 VAL B 118 REMARK 465 MET B 119 REMARK 465 GLY B 120 REMARK 465 ARG B 121 REMARK 465 VAL B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 129 OG1 THR B 133 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 84 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 PRO A 307 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO B 10 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO B 111 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 PRO B 185 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG B 280 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 136.93 -170.01 REMARK 500 LYS A 38 -31.76 -37.34 REMARK 500 THR A 56 -18.83 -39.21 REMARK 500 LYS A 81 -98.20 -59.67 REMARK 500 ALA A 83 176.74 -55.08 REMARK 500 LYS A 85 -156.52 -126.13 REMARK 500 PRO A 111 159.55 -42.75 REMARK 500 VAL A 130 -72.63 -55.08 REMARK 500 GLU A 159 5.37 -69.33 REMARK 500 ALA A 188 -81.07 -50.19 REMARK 500 VAL A 189 -73.99 -26.48 REMARK 500 ALA A 190 -38.60 -35.38 REMARK 500 GLU A 212 -6.75 -59.66 REMARK 500 LEU A 215 159.52 -46.29 REMARK 500 PRO A 222 -45.32 -28.73 REMARK 500 VAL A 224 -3.96 -59.11 REMARK 500 LEU A 249 -34.71 -39.68 REMARK 500 LEU A 252 156.89 -47.38 REMARK 500 ALA A 263 -74.05 -36.54 REMARK 500 PHE A 321 109.02 -57.42 REMARK 500 TRP A 338 -71.97 -57.78 REMARK 500 LYS A 352 -36.61 -23.64 REMARK 500 VAL A 356 140.08 -38.87 REMARK 500 ASP A 360 140.25 -38.43 REMARK 500 ASN A 367 -60.55 -102.77 REMARK 500 PRO B 10 148.30 -6.61 REMARK 500 LYS B 14 -42.96 -25.93 REMARK 500 THR B 16 -47.49 -27.16 REMARK 500 PHE B 18 -8.41 -59.85 REMARK 500 LEU B 79 3.01 -41.72 REMARK 500 VAL B 100 166.11 -42.31 REMARK 500 VAL B 130 -72.24 -60.80 REMARK 500 GLU B 148 -73.15 -75.09 REMARK 500 ARG B 151 -31.61 -35.97 REMARK 500 ALA B 156 8.14 -61.92 REMARK 500 THR B 182 31.05 -86.49 REMARK 500 GLU B 187 3.56 -64.25 REMARK 500 VAL B 189 10.34 -54.39 REMARK 500 VAL B 207 64.91 -66.32 REMARK 500 ASP B 217 12.97 -146.50 REMARK 500 ASN B 221 93.93 -59.61 REMARK 500 GLU B 248 -77.77 -62.00 REMARK 500 ALA B 250 -16.13 -47.85 REMARK 500 GLU B 251 -34.29 -133.74 REMARK 500 SER B 253 139.45 -26.52 REMARK 500 GLU B 255 3.07 -56.49 REMARK 500 ARG B 258 -76.05 -45.99 REMARK 500 LEU B 260 -71.06 -70.68 REMARK 500 ALA B 262 -71.08 -28.34 REMARK 500 TYR B 264 34.50 -88.37 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 51 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 84 21.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DBY RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH GDP REMARK 900 RELATED ID: TTK003001291.2 RELATED DB: TARGETDB DBREF 2DWQ A 1 368 UNP Q5SJ29 Q5SJ29_THET8 1 368 DBREF 2DWQ B 1 368 UNP Q5SJ29 Q5SJ29_THET8 1 368 SEQRES 1 A 368 MET LEU ALA VAL GLY ILE VAL GLY LEU PRO ASN VAL GLY SEQRES 2 A 368 LYS SER THR LEU PHE ASN ALA LEU THR ARG ALA ASN ALA SEQRES 3 A 368 LEU ALA ALA ASN TYR PRO PHE ALA THR ILE ASP LYS ASN SEQRES 4 A 368 VAL GLY VAL VAL PRO LEU GLU ASP GLU ARG LEU TYR ALA SEQRES 5 A 368 LEU GLN ARG THR PHE ALA LYS GLY GLU ARG VAL PRO PRO SEQRES 6 A 368 VAL VAL PRO THR HIS VAL GLU PHE VAL ASP ILE ALA GLY SEQRES 7 A 368 LEU VAL LYS GLY ALA HIS LYS GLY GLU GLY LEU GLY ASN SEQRES 8 A 368 GLN PHE LEU ALA HIS ILE ARG GLU VAL ALA ALA ILE ALA SEQRES 9 A 368 HIS VAL LEU ARG CYS PHE PRO ASP PRO ASP VAL VAL HIS SEQRES 10 A 368 VAL MET GLY ARG VAL ASP PRO LEU GLU ASP ALA GLU VAL SEQRES 11 A 368 VAL GLU THR GLU LEU LEU LEU ALA ASP LEU ALA THR LEU SEQRES 12 A 368 GLU ARG ARG LEU GLU ARG LEU ARG LYS GLU ALA ARG ALA SEQRES 13 A 368 ASP ARG GLU ARG LEU PRO LEU LEU GLU ALA ALA GLU GLY SEQRES 14 A 368 LEU TYR VAL HIS LEU GLN GLU GLY LYS PRO ALA ARG THR SEQRES 15 A 368 PHE PRO PRO SER GLU ALA VAL ALA ARG PHE LEU LYS GLU SEQRES 16 A 368 THR PRO LEU LEU THR ALA LYS PRO VAL ILE TYR VAL ALA SEQRES 17 A 368 ASN VAL ALA GLU GLU ASP LEU PRO ASP GLY ARG GLY ASN SEQRES 18 A 368 PRO GLN VAL GLU ALA VAL ARG ARG LYS ALA LEU GLU GLU SEQRES 19 A 368 GLY ALA GLU VAL VAL VAL VAL SER ALA ARG LEU GLU ALA SEQRES 20 A 368 GLU LEU ALA GLU LEU SER GLY GLU GLU ALA ARG GLU LEU SEQRES 21 A 368 LEU ALA ALA TYR GLY LEU GLN GLU SER GLY LEU GLN ARG SEQRES 22 A 368 LEU ALA ARG ALA GLY TYR ARG ALA LEU ASP LEU LEU THR SEQRES 23 A 368 PHE PHE THR ALA GLY GLU LYS GLU VAL ARG ALA TRP THR SEQRES 24 A 368 VAL ARG ARG GLY THR LYS ALA PRO ARG ALA ALA GLY GLU SEQRES 25 A 368 ILE HIS SER ASP MET GLU ARG GLY PHE ILE ARG ALA GLU SEQRES 26 A 368 VAL ILE PRO TRP ASP LYS LEU VAL GLU ALA GLY GLY TRP SEQRES 27 A 368 ALA ARG ALA LYS GLU ARG GLY TRP VAL ARG LEU GLU GLY SEQRES 28 A 368 LYS ASP TYR GLU VAL GLN ASP GLY ASP VAL ILE TYR VAL SEQRES 29 A 368 LEU PHE ASN ALA SEQRES 1 B 368 MET LEU ALA VAL GLY ILE VAL GLY LEU PRO ASN VAL GLY SEQRES 2 B 368 LYS SER THR LEU PHE ASN ALA LEU THR ARG ALA ASN ALA SEQRES 3 B 368 LEU ALA ALA ASN TYR PRO PHE ALA THR ILE ASP LYS ASN SEQRES 4 B 368 VAL GLY VAL VAL PRO LEU GLU ASP GLU ARG LEU TYR ALA SEQRES 5 B 368 LEU GLN ARG THR PHE ALA LYS GLY GLU ARG VAL PRO PRO SEQRES 6 B 368 VAL VAL PRO THR HIS VAL GLU PHE VAL ASP ILE ALA GLY SEQRES 7 B 368 LEU VAL LYS GLY ALA HIS LYS GLY GLU GLY LEU GLY ASN SEQRES 8 B 368 GLN PHE LEU ALA HIS ILE ARG GLU VAL ALA ALA ILE ALA SEQRES 9 B 368 HIS VAL LEU ARG CYS PHE PRO ASP PRO ASP VAL VAL HIS SEQRES 10 B 368 VAL MET GLY ARG VAL ASP PRO LEU GLU ASP ALA GLU VAL SEQRES 11 B 368 VAL GLU THR GLU LEU LEU LEU ALA ASP LEU ALA THR LEU SEQRES 12 B 368 GLU ARG ARG LEU GLU ARG LEU ARG LYS GLU ALA ARG ALA SEQRES 13 B 368 ASP ARG GLU ARG LEU PRO LEU LEU GLU ALA ALA GLU GLY SEQRES 14 B 368 LEU TYR VAL HIS LEU GLN GLU GLY LYS PRO ALA ARG THR SEQRES 15 B 368 PHE PRO PRO SER GLU ALA VAL ALA ARG PHE LEU LYS GLU SEQRES 16 B 368 THR PRO LEU LEU THR ALA LYS PRO VAL ILE TYR VAL ALA SEQRES 17 B 368 ASN VAL ALA GLU GLU ASP LEU PRO ASP GLY ARG GLY ASN SEQRES 18 B 368 PRO GLN VAL GLU ALA VAL ARG ARG LYS ALA LEU GLU GLU SEQRES 19 B 368 GLY ALA GLU VAL VAL VAL VAL SER ALA ARG LEU GLU ALA SEQRES 20 B 368 GLU LEU ALA GLU LEU SER GLY GLU GLU ALA ARG GLU LEU SEQRES 21 B 368 LEU ALA ALA TYR GLY LEU GLN GLU SER GLY LEU GLN ARG SEQRES 22 B 368 LEU ALA ARG ALA GLY TYR ARG ALA LEU ASP LEU LEU THR SEQRES 23 B 368 PHE PHE THR ALA GLY GLU LYS GLU VAL ARG ALA TRP THR SEQRES 24 B 368 VAL ARG ARG GLY THR LYS ALA PRO ARG ALA ALA GLY GLU SEQRES 25 B 368 ILE HIS SER ASP MET GLU ARG GLY PHE ILE ARG ALA GLU SEQRES 26 B 368 VAL ILE PRO TRP ASP LYS LEU VAL GLU ALA GLY GLY TRP SEQRES 27 B 368 ALA ARG ALA LYS GLU ARG GLY TRP VAL ARG LEU GLU GLY SEQRES 28 B 368 LYS ASP TYR GLU VAL GLN ASP GLY ASP VAL ILE TYR VAL SEQRES 29 B 368 LEU PHE ASN ALA FORMUL 3 HOH *31(H2 O) HELIX 1 1 GLY A 13 LEU A 27 1 15 HELIX 2 2 GLU A 48 PHE A 57 1 10 HELIX 3 3 ILE A 76 ALA A 83 1 8 HELIX 4 4 GLY A 88 GLU A 99 1 12 HELIX 5 5 ASP A 123 ALA A 154 1 32 HELIX 6 6 ARG A 155 ALA A 156 5 2 HELIX 7 7 ASP A 157 GLU A 159 5 3 HELIX 8 8 ARG A 160 GLU A 176 1 17 HELIX 9 9 PRO A 179 PHE A 183 5 5 HELIX 10 10 SER A 186 THR A 196 1 11 HELIX 11 11 LEU A 198 LYS A 202 5 5 HELIX 12 12 ASN A 221 GLU A 234 1 14 HELIX 13 13 ARG A 244 LEU A 249 1 6 HELIX 14 14 SER A 253 TYR A 264 1 12 HELIX 15 15 SER A 269 LEU A 282 1 14 HELIX 16 16 LYS A 305 HIS A 314 1 10 HELIX 17 17 SER A 315 GLY A 320 1 6 HELIX 18 18 TRP A 329 GLY A 336 1 8 HELIX 19 19 GLY A 337 ARG A 344 1 8 HELIX 20 20 GLY B 13 ALA B 26 1 14 HELIX 21 21 ASP B 47 PHE B 57 1 11 HELIX 22 22 ASN B 91 VAL B 100 1 10 HELIX 23 23 PRO B 124 ASP B 157 1 34 HELIX 24 24 ARG B 160 GLU B 176 1 17 HELIX 25 25 PRO B 179 PHE B 183 5 5 HELIX 26 26 ALA B 190 THR B 196 1 7 HELIX 27 27 LEU B 198 LYS B 202 5 5 HELIX 28 28 ASN B 221 GLY B 235 1 15 HELIX 29 29 SER B 242 LEU B 249 1 8 HELIX 30 30 SER B 253 TYR B 264 1 12 HELIX 31 31 SER B 269 LEU B 282 1 14 HELIX 32 32 LYS B 305 GLU B 312 1 8 HELIX 33 33 SER B 315 GLY B 320 1 6 HELIX 34 34 TRP B 329 GLY B 336 1 8 HELIX 35 35 GLY B 337 GLY B 345 1 9 SHEET 1 A 6 VAL A 40 PRO A 44 0 SHEET 2 A 6 HIS A 70 ASP A 75 -1 O PHE A 73 N GLY A 41 SHEET 3 A 6 VAL A 4 VAL A 7 1 N ILE A 6 O VAL A 74 SHEET 4 A 6 ALA A 102 ARG A 108 1 O ALA A 102 N GLY A 5 SHEET 5 A 6 VAL A 204 ASN A 209 1 O VAL A 207 N LEU A 107 SHEET 6 A 6 ALA A 236 VAL A 241 1 O VAL A 241 N ALA A 208 SHEET 1 B 3 VAL A 66 VAL A 67 0 SHEET 2 B 3 VAL A 295 ARG A 301 1 O ALA A 297 N VAL A 67 SHEET 3 B 3 LEU A 284 ALA A 290 -1 N LEU A 285 O VAL A 300 SHEET 1 C 3 ARG A 348 GLU A 350 0 SHEET 2 C 3 PHE A 321 PRO A 328 -1 N ALA A 324 O GLU A 350 SHEET 3 C 3 ASP A 360 PHE A 366 -1 O LEU A 365 N ARG A 323 SHEET 1 D 6 VAL B 40 PRO B 44 0 SHEET 2 D 6 HIS B 70 ASP B 75 -1 O VAL B 71 N VAL B 43 SHEET 3 D 6 VAL B 4 VAL B 7 1 N VAL B 4 O GLU B 72 SHEET 4 D 6 ALA B 102 HIS B 105 1 O ALA B 102 N GLY B 5 SHEET 5 D 6 VAL B 204 ILE B 205 1 O ILE B 205 N ILE B 103 SHEET 6 D 6 ALA B 236 GLU B 237 1 O GLU B 237 N VAL B 204 SHEET 1 E 3 VAL B 66 VAL B 67 0 SHEET 2 E 3 VAL B 295 ARG B 301 1 O ALA B 297 N VAL B 67 SHEET 3 E 3 LEU B 284 THR B 289 -1 N PHE B 287 O TRP B 298 SHEET 1 F 3 LEU B 107 ARG B 108 0 SHEET 2 F 3 ALA B 208 ASN B 209 1 O ASN B 209 N LEU B 107 SHEET 3 F 3 VAL B 240 VAL B 241 1 O VAL B 241 N ALA B 208 SHEET 1 G 3 ARG B 348 GLU B 350 0 SHEET 2 G 3 PHE B 321 PRO B 328 -1 N ALA B 324 O GLU B 350 SHEET 3 G 3 ASP B 360 PHE B 366 -1 O TYR B 363 N GLU B 325 CISPEP 1 LEU A 215 PRO A 216 0 0.19 CISPEP 2 LEU B 215 PRO B 216 0 0.46 CRYST1 52.940 54.357 92.585 80.11 76.46 73.12 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018889 -0.005733 -0.003935 0.00000 SCALE2 0.000000 0.019225 -0.002156 0.00000 SCALE3 0.000000 0.000000 0.011179 0.00000