PDB Short entry for 2DYB HEADER OXIDOREDUCTASE 08-SEP-06 2DYB TITLE THE CRYSTAL STRUCTURE OF HUMAN P40(PHOX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL CYTOSOL FACTOR 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NCF-4, NEUTROPHIL NADPH OXIDASE FACTOR 4, P40-PHOX, P40PHOX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS P40(PHOX), NADPH OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HONBOU REVDAT 4 25-OCT-23 2DYB 1 SEQADV LINK REVDAT 3 24-FEB-09 2DYB 1 VERSN REVDAT 2 06-MAR-07 2DYB 1 JRNL REVDAT 1 23-JAN-07 2DYB 0 JRNL AUTH K.HONBOU,R.MINAKAMI,S.YUZAWA,R.TAKEYA,N.N.SUZUKI,S.KAMAKURA, JRNL AUTH 2 H.SUMIMOTO,F.INAGAKI JRNL TITL FULL-LENGTH P40PHOX STRUCTURE SUGGESTS A BASIS FOR JRNL TITL 2 REGULATION MECHANISM OF ITS MEMBRANE BINDING. JRNL REF EMBO J. V. 26 1176 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17290225 JRNL DOI 10.1038/SJ.EMBOJ.7601561 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 231491.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 19197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1912 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2684 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 11.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 350 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.51000 REMARK 3 B22 (A**2) : -22.61000 REMARK 3 B33 (A**2) : 21.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.60 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 59.09 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN2.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN2.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000025994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22612 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H6H, 1W6X, AND 1OEY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 20000, 200MM BIS-TRIS-HCL, 10MM REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.94150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.94150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 73.13650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 94.90650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 73.13650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 94.90650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.94150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 73.13650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 94.90650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.94150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 73.13650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 94.90650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 LEU A 7 REMARK 465 ARG A 8 REMARK 465 PRO A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 LYS A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 ALA A 81 REMARK 465 LEU A 82 REMARK 465 ALA A 83 REMARK 465 THR A 154 REMARK 465 ARG A 155 REMARK 465 LYS A 156 REMARK 465 VAL A 157 REMARK 465 LYS A 158 REMARK 465 SER A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 PRO A 162 REMARK 465 GLN A 163 REMARK 465 GLY A 164 REMARK 465 ASN A 165 REMARK 465 SER A 166 REMARK 465 VAL A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 331 REMARK 465 TYR A 332 REMARK 465 ARG A 333 REMARK 465 VAL A 334 REMARK 465 TYR A 335 REMARK 465 ASN A 336 REMARK 465 THR A 337 REMARK 465 MET A 338 REMARK 465 PRO A 339 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 ALA B 4 REMARK 465 GLN B 5 REMARK 465 GLN B 6 REMARK 465 LEU B 7 REMARK 465 ARG B 8 REMARK 465 PRO B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 ALA B 91 REMARK 465 LYS B 92 REMARK 465 VAL B 93 REMARK 465 TYR B 94 REMARK 465 VAL B 95 REMARK 465 LEU B 150 REMARK 465 ARG B 151 REMARK 465 PRO B 152 REMARK 465 ARG B 153 REMARK 465 THR B 154 REMARK 465 ARG B 155 REMARK 465 LYS B 156 REMARK 465 VAL B 157 REMARK 465 LYS B 158 REMARK 465 SER B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 PRO B 162 REMARK 465 GLN B 163 REMARK 465 GLY B 164 REMARK 465 ASN B 165 REMARK 465 SER B 166 REMARK 465 VAL B 167 REMARK 465 ASP B 168 REMARK 465 ARG B 169 REMARK 465 MET B 170 REMARK 465 ALA B 171 REMARK 465 ALA B 172 REMARK 465 GLU B 232 REMARK 465 GLU B 233 REMARK 465 ASP B 234 REMARK 465 ALA B 290 REMARK 465 GLU B 291 REMARK 465 GLY B 292 REMARK 465 ALA B 310 REMARK 465 ARG B 311 REMARK 465 GLY B 312 REMARK 465 LEU B 313 REMARK 465 PRO B 314 REMARK 465 SER B 315 REMARK 465 GLN B 316 REMARK 465 LYS B 317 REMARK 465 ARG B 318 REMARK 465 LEU B 319 REMARK 465 LYS B 329 REMARK 465 ASP B 330 REMARK 465 ASN B 331 REMARK 465 TYR B 332 REMARK 465 ARG B 333 REMARK 465 VAL B 334 REMARK 465 TYR B 335 REMARK 465 ASN B 336 REMARK 465 THR B 337 REMARK 465 MET B 338 REMARK 465 PRO B 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 SER A 11 OG REMARK 470 ASP A 12 CG OD1 OD2 REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 LEU A 16 CG CD1 CD2 REMARK 470 ILE A 29 CG1 CG2 CD1 REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 THR A 85 OG1 CG2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 VAL A 93 CG1 CG2 REMARK 470 VAL A 95 CG1 CG2 REMARK 470 VAL A 97 CG1 CG2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 ILE A 101 CG1 CG2 CD1 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LEU A 150 CG CD1 CD2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 THR A 248 OG1 CG2 REMARK 470 SER A 250 OG REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 279 CG CD OE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 298 CG CD1 CD2 REMARK 470 SER A 299 OG REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 SER B 11 OG REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 SER B 23 OG REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 THR B 36 OG1 CG2 REMARK 470 SER B 37 OG REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 ILE B 106 CG1 CG2 CD1 REMARK 470 VAL B 123 CG1 CG2 REMARK 470 GLN B 145 CG CD OE1 NE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 THR B 182 OG1 CG2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 PHE B 191 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ILE B 197 CG1 CG2 CD1 REMARK 470 PHE B 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 THR B 211 OG1 CG2 REMARK 470 VAL B 212 CG1 CG2 REMARK 470 THR B 216 OG1 CG2 REMARK 470 LEU B 221 CG CD1 CD2 REMARK 470 VAL B 224 CG1 CG2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ILE B 226 CG1 CG2 CD1 REMARK 470 LEU B 227 CG CD1 CD2 REMARK 470 PHE B 230 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 235 CG OD1 OD2 REMARK 470 TYR B 245 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 247 CG OD1 OD2 REMARK 470 THR B 248 OG1 CG2 REMARK 470 SER B 250 OG REMARK 470 THR B 251 OG1 CG2 REMARK 470 ILE B 252 CG1 CG2 CD1 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 ILE B 255 CG1 CG2 CD1 REMARK 470 VAL B 257 CG1 CG2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 SER B 262 OG REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 LEU B 267 CG CD1 CD2 REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 ARG B 275 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 277 CG CD OE1 OE2 REMARK 470 GLN B 279 CG CD OE1 NE2 REMARK 470 ARG B 280 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 282 CG OD1 OD2 REMARK 470 ASN B 286 CG OD1 ND2 REMARK 470 ARG B 288 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 289 CG OD1 OD2 REMARK 470 ASP B 293 CG OD1 OD2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 VAL B 295 CG1 CG2 REMARK 470 LEU B 297 CG CD1 CD2 REMARK 470 LEU B 298 CG CD1 CD2 REMARK 470 SER B 299 OG REMARK 470 VAL B 303 CG1 CG2 REMARK 470 LEU B 305 CG CD1 CD2 REMARK 470 MET B 306 CG SD CE REMARK 470 VAL B 307 CG1 CG2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 309 CG CD OE1 NE2 REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 THR B 327 OG1 CG2 REMARK 470 GLN B 328 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 10 -70.85 -50.55 REMARK 500 PHE A 13 -81.77 -65.77 REMARK 500 GLU A 14 -35.28 -22.64 REMARK 500 HIS A 38 -165.69 -127.17 REMARK 500 ARG A 60 -28.08 -38.74 REMARK 500 PHE A 73 26.54 -72.15 REMARK 500 PRO A 90 164.64 -47.36 REMARK 500 VAL A 93 -3.44 -152.04 REMARK 500 VAL A 95 105.40 -163.88 REMARK 500 ILE A 106 -72.64 -50.14 REMARK 500 LEU A 119 173.07 -54.85 REMARK 500 ARG A 151 70.96 -172.24 REMARK 500 ILE A 203 -79.63 -103.57 REMARK 500 ASN A 204 -154.32 -133.67 REMARK 500 ARG A 213 77.07 41.40 REMARK 500 GLU A 246 -150.24 -95.71 REMARK 500 THR A 248 -60.53 -98.33 REMARK 500 LEU A 267 -35.72 -36.87 REMARK 500 ARG A 311 -37.93 -32.39 REMARK 500 PHE B 13 -74.40 -43.30 REMARK 500 GLU B 14 -42.98 -25.35 REMARK 500 ALA B 83 92.16 68.27 REMARK 500 CAF B 84 165.41 175.99 REMARK 500 ILE B 106 -26.76 -32.19 REMARK 500 PHE B 179 -165.05 -124.44 REMARK 500 LEU B 200 -50.71 -121.58 REMARK 500 ASN B 204 -154.13 -150.32 REMARK 500 VAL B 212 145.80 169.48 REMARK 500 ARG B 213 72.19 34.11 REMARK 500 PHE B 219 149.85 170.29 REMARK 500 LYS B 228 165.48 -45.24 REMARK 500 GLU B 246 -99.05 -113.58 REMARK 500 ILE B 249 146.72 -35.70 REMARK 500 GLU B 259 154.95 -34.71 REMARK 500 LEU B 261 -6.79 -53.05 REMARK 500 SER B 263 175.87 -52.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 134 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2DYB A 1 339 UNP Q15080 NCF4_HUMAN 1 339 DBREF 2DYB B 1 339 UNP Q15080 NCF4_HUMAN 1 339 SEQADV 2DYB GLY A -1 UNP Q15080 CLONING ARTIFACT SEQADV 2DYB ALA A 0 UNP Q15080 CLONING ARTIFACT SEQADV 2DYB GLY B -1 UNP Q15080 CLONING ARTIFACT SEQADV 2DYB ALA B 0 UNP Q15080 CLONING ARTIFACT SEQRES 1 A 341 GLY ALA MET ALA VAL ALA GLN GLN LEU ARG ALA GLU SER SEQRES 2 A 341 ASP PHE GLU GLN LEU PRO ASP ASP VAL ALA ILE SER ALA SEQRES 3 A 341 ASN ILE ALA ASP ILE GLU GLU LYS ARG GLY PHE THR SER SEQRES 4 A 341 HIS PHE VAL PHE VAL ILE GLU VAL LYS THR LYS GLY GLY SEQRES 5 A 341 SER LYS TYR LEU ILE TYR ARG ARG TYR ARG GLN PHE HIS SEQRES 6 A 341 ALA LEU GLN SER LYS LEU GLU GLU ARG PHE GLY PRO ASP SEQRES 7 A 341 SER LYS SER SER ALA LEU ALA CAF THR LEU PRO THR LEU SEQRES 8 A 341 PRO ALA LYS VAL TYR VAL GLY VAL LYS GLN GLU ILE ALA SEQRES 9 A 341 GLU MET ARG ILE PRO ALA LEU ASN ALA TYR MET LYS SER SEQRES 10 A 341 LEU LEU SER LEU PRO VAL TRP VAL LEU MET ASP GLU ASP SEQRES 11 A 341 VAL ARG ILE PHE PHE TYR GLN SER PRO TYR ASP SER GLU SEQRES 12 A 341 GLN VAL PRO GLN ALA LEU ARG ARG LEU ARG PRO ARG THR SEQRES 13 A 341 ARG LYS VAL LYS SER VAL SER PRO GLN GLY ASN SER VAL SEQRES 14 A 341 ASP ARG MET ALA ALA PRO ARG ALA GLU ALA LEU PHE ASP SEQRES 15 A 341 PHE THR GLY ASN SER LYS LEU GLU LEU ASN PHE LYS ALA SEQRES 16 A 341 GLY ASP VAL ILE PHE LEU LEU SER ARG ILE ASN LYS ASP SEQRES 17 A 341 TRP LEU GLU GLY THR VAL ARG GLY ALA THR GLY ILE PHE SEQRES 18 A 341 PRO LEU SER PHE VAL LYS ILE LEU LYS ASP PHE PRO GLU SEQRES 19 A 341 GLU ASP ASP PRO THR ASN TRP LEU ARG CYS TYR TYR TYR SEQRES 20 A 341 GLU ASP THR ILE SER THR ILE LYS ASP ILE ALA VAL GLU SEQRES 21 A 341 GLU ASP LEU SER SER THR PRO LEU LEU LYS ASP LEU LEU SEQRES 22 A 341 GLU LEU THR ARG ARG GLU PHE GLN ARG GLU ASP ILE ALA SEQRES 23 A 341 LEU ASN TYR ARG ASP ALA GLU GLY ASP LEU VAL ARG LEU SEQRES 24 A 341 LEU SER ASP GLU ASP VAL ALA LEU MET VAL ARG GLN ALA SEQRES 25 A 341 ARG GLY LEU PRO SER GLN LYS ARG LEU PHE PRO TRP LYS SEQRES 26 A 341 LEU HIS ILE THR GLN LYS ASP ASN TYR ARG VAL TYR ASN SEQRES 27 A 341 THR MET PRO SEQRES 1 B 341 GLY ALA MET ALA VAL ALA GLN GLN LEU ARG ALA GLU SER SEQRES 2 B 341 ASP PHE GLU GLN LEU PRO ASP ASP VAL ALA ILE SER ALA SEQRES 3 B 341 ASN ILE ALA ASP ILE GLU GLU LYS ARG GLY PHE THR SER SEQRES 4 B 341 HIS PHE VAL PHE VAL ILE GLU VAL LYS THR LYS GLY GLY SEQRES 5 B 341 SER LYS TYR LEU ILE TYR ARG ARG TYR ARG GLN PHE HIS SEQRES 6 B 341 ALA LEU GLN SER LYS LEU GLU GLU ARG PHE GLY PRO ASP SEQRES 7 B 341 SER LYS SER SER ALA LEU ALA CAF THR LEU PRO THR LEU SEQRES 8 B 341 PRO ALA LYS VAL TYR VAL GLY VAL LYS GLN GLU ILE ALA SEQRES 9 B 341 GLU MET ARG ILE PRO ALA LEU ASN ALA TYR MET LYS SER SEQRES 10 B 341 LEU LEU SER LEU PRO VAL TRP VAL LEU MET ASP GLU ASP SEQRES 11 B 341 VAL ARG ILE PHE PHE TYR GLN SER PRO TYR ASP SER GLU SEQRES 12 B 341 GLN VAL PRO GLN ALA LEU ARG ARG LEU ARG PRO ARG THR SEQRES 13 B 341 ARG LYS VAL LYS SER VAL SER PRO GLN GLY ASN SER VAL SEQRES 14 B 341 ASP ARG MET ALA ALA PRO ARG ALA GLU ALA LEU PHE ASP SEQRES 15 B 341 PHE THR GLY ASN SER LYS LEU GLU LEU ASN PHE LYS ALA SEQRES 16 B 341 GLY ASP VAL ILE PHE LEU LEU SER ARG ILE ASN LYS ASP SEQRES 17 B 341 TRP LEU GLU GLY THR VAL ARG GLY ALA THR GLY ILE PHE SEQRES 18 B 341 PRO LEU SER PHE VAL LYS ILE LEU LYS ASP PHE PRO GLU SEQRES 19 B 341 GLU ASP ASP PRO THR ASN TRP LEU ARG CYS TYR TYR TYR SEQRES 20 B 341 GLU ASP THR ILE SER THR ILE LYS ASP ILE ALA VAL GLU SEQRES 21 B 341 GLU ASP LEU SER SER THR PRO LEU LEU LYS ASP LEU LEU SEQRES 22 B 341 GLU LEU THR ARG ARG GLU PHE GLN ARG GLU ASP ILE ALA SEQRES 23 B 341 LEU ASN TYR ARG ASP ALA GLU GLY ASP LEU VAL ARG LEU SEQRES 24 B 341 LEU SER ASP GLU ASP VAL ALA LEU MET VAL ARG GLN ALA SEQRES 25 B 341 ARG GLY LEU PRO SER GLN LYS ARG LEU PHE PRO TRP LYS SEQRES 26 B 341 LEU HIS ILE THR GLN LYS ASP ASN TYR ARG VAL TYR ASN SEQRES 27 B 341 THR MET PRO MODRES 2DYB CAF A 84 CYS S-DIMETHYLARSINOYL-CYSTEINE MODRES 2DYB CAF B 84 CYS S-DIMETHYLARSINOYL-CYSTEINE HET CAF A 84 10 HET CAF B 84 10 HETNAM CAF S-DIMETHYLARSINOYL-CYSTEINE HETSYN CAF CYSTEIN-S-YL CACODYLATE FORMUL 1 CAF 2(C5 H12 AS N O3 S) HELIX 1 1 ALA A 9 GLN A 15 1 7 HELIX 2 2 ARG A 58 PHE A 73 1 16 HELIX 3 3 VAL A 97 LEU A 119 1 23 HELIX 4 4 PRO A 120 MET A 125 1 6 HELIX 5 5 ASP A 126 TYR A 134 1 9 HELIX 6 6 SER A 136 ARG A 151 1 16 HELIX 7 7 LEU A 266 GLN A 279 1 14 HELIX 8 8 SER A 299 ARG A 311 1 13 HELIX 9 9 ALA B 9 GLN B 15 1 7 HELIX 10 10 TYR B 59 GLY B 74 1 16 HELIX 11 11 VAL B 97 LEU B 117 1 21 HELIX 12 12 PRO B 120 MET B 125 1 6 HELIX 13 13 ASP B 126 TYR B 134 1 9 HELIX 14 14 PRO B 144 ARG B 149 1 6 HELIX 15 15 LEU B 266 PHE B 278 1 13 HELIX 16 16 SER B 299 GLN B 309 1 11 SHEET 1 A 3 ALA A 21 ARG A 33 0 SHEET 2 A 3 SER A 37 THR A 47 -1 O VAL A 42 N ASP A 28 SHEET 3 A 3 LYS A 52 ARG A 57 -1 O ARG A 57 N PHE A 41 SHEET 1 B 5 ALA A 215 PRO A 220 0 SHEET 2 B 5 TRP A 207 VAL A 212 -1 N LEU A 208 O PHE A 219 SHEET 3 B 5 VAL A 196 ARG A 202 -1 N SER A 201 O GLU A 209 SHEET 4 B 5 ARG A 174 ALA A 177 -1 N ALA A 175 O ILE A 197 SHEET 5 B 5 VAL A 224 LYS A 228 -1 O LEU A 227 N ARG A 174 SHEET 1 C 5 SER A 250 VAL A 257 0 SHEET 2 C 5 ASN A 238 TYR A 245 -1 N LEU A 240 O ILE A 255 SHEET 3 C 5 LEU A 324 GLN A 328 1 O ILE A 326 N TYR A 245 SHEET 4 C 5 ILE A 283 ARG A 288 -1 N ASN A 286 O HIS A 325 SHEET 5 C 5 LEU A 294 ARG A 296 -1 O VAL A 295 N TYR A 287 SHEET 1 D 3 ALA B 21 ARG B 33 0 SHEET 2 D 3 SER B 37 THR B 47 -1 O VAL B 42 N ASP B 28 SHEET 3 D 3 LYS B 52 ARG B 58 -1 O ARG B 57 N PHE B 41 SHEET 1 E 5 THR B 216 GLY B 217 0 SHEET 2 E 5 LEU B 208 THR B 211 -1 N GLY B 210 O GLY B 217 SHEET 3 E 5 VAL B 196 ARG B 202 -1 N SER B 201 O GLU B 209 SHEET 4 E 5 ARG B 174 ALA B 177 -1 N ALA B 175 O ILE B 197 SHEET 5 E 5 VAL B 224 LEU B 227 -1 O LEU B 227 N ARG B 174 SHEET 1 F 2 ASN B 238 ARG B 241 0 SHEET 2 F 2 ASP B 254 VAL B 257 -1 O VAL B 257 N ASN B 238 SHEET 1 G 3 SER B 250 THR B 251 0 SHEET 2 G 3 TYR B 244 TYR B 245 -1 N TYR B 244 O THR B 251 SHEET 3 G 3 ILE B 326 THR B 327 1 O ILE B 326 N TYR B 245 SHEET 1 H 2 ASN B 286 TYR B 287 0 SHEET 2 H 2 VAL B 295 ARG B 296 -1 O VAL B 295 N TYR B 287 LINK C CAF A 84 N THR A 85 1555 1555 1.33 LINK C ALA B 83 N CAF B 84 1555 1555 1.33 LINK C CAF B 84 N THR B 85 1555 1555 1.33 CRYST1 146.273 189.813 79.883 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006837 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012518 0.00000