PDB Short entry for 2E44 HEADER RNA BINDING PROTEIN 04-DEC-06 2E44 TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN INSULIN-LIKE GROWTH FACTOR TITLE 2 2 MRNA BINDING PROTEIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN-LIKE GROWTH FACTOR 2 MRNA BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGF2BP3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060227-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, RBD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.FURUE,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E44 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E44 1 VERSN REVDAT 1 05-JUN-07 2E44 0 JRNL AUTH M.FURUE,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN INSULIN-LIKE JRNL TITL 2 GROWTH FACTOR 2 MRNA BINDING PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E44 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026200. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 200 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9746, OLIVIA 1.10.5, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 77 41.83 -107.50 REMARK 500 1 ARG A 81 44.32 -90.48 REMARK 500 1 LYS A 82 144.71 -34.97 REMARK 500 1 PRO A 90 1.26 -69.75 REMARK 500 1 LEU A 101 -70.45 -65.24 REMARK 500 1 LYS A 138 -64.26 -103.58 REMARK 500 1 ASN A 140 -29.31 -37.83 REMARK 500 1 THR A 148 99.74 -58.86 REMARK 500 1 ALA A 159 43.84 -80.61 REMARK 500 2 SER A 70 41.30 -107.22 REMARK 500 2 LYS A 76 140.70 -37.51 REMARK 500 2 ARG A 79 142.02 -35.63 REMARK 500 2 PRO A 90 0.01 -69.70 REMARK 500 2 GLU A 95 -33.93 -37.41 REMARK 500 2 LYS A 138 -63.99 -105.30 REMARK 500 2 GLU A 145 40.76 36.57 REMARK 500 2 ALA A 160 54.50 34.49 REMARK 500 3 GLN A 78 46.11 -101.08 REMARK 500 3 PRO A 90 2.22 -69.75 REMARK 500 3 LYS A 138 -63.40 -105.75 REMARK 500 3 ASN A 140 -29.66 -39.11 REMARK 500 4 PRO A 75 -178.43 -69.78 REMARK 500 4 LYS A 76 83.35 -67.88 REMARK 500 4 ARG A 77 110.95 -165.03 REMARK 500 4 PRO A 90 1.46 -69.78 REMARK 500 4 LYS A 138 -60.06 -100.52 REMARK 500 4 ALA A 159 40.24 -87.33 REMARK 500 5 ARG A 79 49.64 -86.66 REMARK 500 5 PRO A 90 0.81 -69.82 REMARK 500 5 THR A 119 158.81 -48.52 REMARK 500 5 ASN A 146 32.42 72.69 REMARK 500 5 PRO A 155 -168.02 -69.74 REMARK 500 5 GLU A 157 112.57 -38.10 REMARK 500 5 ALA A 160 114.84 -173.80 REMARK 500 6 SER A 68 152.06 -37.23 REMARK 500 6 SER A 70 42.54 -105.19 REMARK 500 6 ILE A 80 116.13 -162.49 REMARK 500 6 ARG A 81 103.59 -34.61 REMARK 500 6 LYS A 82 -176.71 -58.53 REMARK 500 6 PRO A 90 1.76 -69.78 REMARK 500 6 LEU A 92 154.33 -46.96 REMARK 500 6 VAL A 107 83.96 -68.90 REMARK 500 6 THR A 119 160.74 -46.20 REMARK 500 6 LYS A 138 -62.94 -107.75 REMARK 500 6 PHE A 142 105.40 -59.98 REMARK 500 6 THR A 148 92.35 -67.63 REMARK 500 6 MET A 158 117.00 -171.45 REMARK 500 7 SER A 73 41.04 -103.25 REMARK 500 7 VAL A 74 147.43 -38.79 REMARK 500 7 GLN A 78 -176.88 -68.95 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003000919.1 RELATED DB: TARGETDB DBREF 2E44 A 73 161 UNP A0A4Z5 A0A4Z5_HUMAN 73 161 SEQADV 2E44 GLY A 66 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 SER A 67 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 SER A 68 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 GLY A 69 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 SER A 70 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 SER A 71 UNP A0A4Z5 CLONING ARTIFACT SEQADV 2E44 GLY A 72 UNP A0A4Z5 CLONING ARTIFACT SEQRES 1 A 96 GLY SER SER GLY SER SER GLY SER VAL PRO LYS ARG GLN SEQRES 2 A 96 ARG ILE ARG LYS LEU GLN ILE ARG ASN ILE PRO PRO HIS SEQRES 3 A 96 LEU GLN TRP GLU VAL LEU ASP SER LEU LEU VAL GLN TYR SEQRES 4 A 96 GLY VAL VAL GLU SER CYS GLU GLN VAL ASN THR ASP SER SEQRES 5 A 96 GLU THR ALA VAL VAL ASN VAL THR TYR SER SER LYS ASP SEQRES 6 A 96 GLN ALA ARG GLN ALA LEU ASP LYS LEU ASN GLY PHE GLN SEQRES 7 A 96 LEU GLU ASN PHE THR LEU LYS VAL ALA TYR ILE PRO ASP SEQRES 8 A 96 GLU MET ALA ALA GLN HELIX 1 1 GLN A 93 GLY A 105 1 13 HELIX 2 2 SER A 128 ASN A 140 1 13 SHEET 1 A 4 VAL A 107 VAL A 113 0 SHEET 2 A 4 ALA A 120 TYR A 126 -1 O ASN A 123 N GLU A 111 SHEET 3 A 4 LEU A 83 ILE A 88 -1 N LEU A 83 O VAL A 124 SHEET 4 A 4 LYS A 150 TYR A 153 -1 O LYS A 150 N ARG A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000