PDB Short entry for 2E5K HEADER PROTEIN BINDING 21-DEC-06 2E5K TITLE SOLUTION STRUCTURE OF SH3 DOMAIN IN SUPPRESSOR OF T-CELL RECEPTOR TITLE 2 SIGNALING 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF T-CELL RECEPTOR SIGNALING 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: STS-1, CBL-INTERACTING PROTEIN P70; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STS1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050704-22; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.SUKEGAWA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E5K 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E5K 1 VERSN REVDAT 1 26-JUN-07 2E5K 0 JRNL AUTH S.SUKEGAWA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF SH3 DOMAIN IN SUPPRESSOR OF T-CELL JRNL TITL 2 RECEPTOR SIGNALING 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E5K COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000026252. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM 13C-15N PROTEIN, 20MM D REMARK 210 -TRIS-HCL(PH7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 245 176.70 -56.29 REMARK 500 1 ASN A 255 46.12 -106.03 REMARK 500 1 ASP A 271 -38.72 -37.70 REMARK 500 1 ILE A 324 -31.26 -130.09 REMARK 500 1 SER A 328 141.87 -174.13 REMARK 500 1 PRO A 331 91.93 -69.76 REMARK 500 1 SER A 332 41.77 37.27 REMARK 500 2 ARG A 252 44.85 38.33 REMARK 500 2 ASN A 255 47.28 -77.96 REMARK 500 2 GLN A 288 87.08 -69.27 REMARK 500 2 SER A 290 26.33 48.09 REMARK 500 2 SER A 292 -36.17 -35.36 REMARK 500 2 ALA A 317 92.06 -69.54 REMARK 500 2 THR A 322 -176.91 -66.60 REMARK 500 2 PHE A 325 143.89 -34.32 REMARK 500 2 SER A 329 43.84 37.58 REMARK 500 3 ASP A 250 143.21 -172.56 REMARK 500 3 ARG A 252 44.58 39.30 REMARK 500 3 PHE A 253 47.41 35.69 REMARK 500 3 ASN A 255 -53.60 -132.54 REMARK 500 3 ASP A 271 -38.47 -35.67 REMARK 500 3 SER A 292 -34.33 -34.06 REMARK 500 3 ALA A 317 89.35 -55.21 REMARK 500 3 ILE A 324 -55.97 -125.36 REMARK 500 3 PHE A 325 139.22 -34.36 REMARK 500 4 SER A 300 174.14 -50.08 REMARK 500 4 ILE A 324 -53.52 -129.96 REMARK 500 4 PHE A 325 133.01 -34.90 REMARK 500 4 SER A 333 174.28 -52.60 REMARK 500 5 GLU A 319 45.70 34.62 REMARK 500 5 CYS A 320 51.04 34.26 REMARK 500 5 SER A 321 -75.06 -82.41 REMARK 500 5 THR A 322 145.34 -34.60 REMARK 500 6 HIS A 256 142.83 -172.85 REMARK 500 6 SER A 290 25.08 41.79 REMARK 500 6 CYS A 320 161.76 -44.13 REMARK 500 6 ILE A 324 -51.14 -126.89 REMARK 500 6 PHE A 325 156.65 -41.49 REMARK 500 7 ARG A 252 35.06 -94.96 REMARK 500 7 GLN A 288 52.95 -96.94 REMARK 500 7 ILE A 324 -64.92 -125.58 REMARK 500 7 PHE A 325 140.37 -34.24 REMARK 500 7 PRO A 331 2.16 -69.75 REMARK 500 7 SER A 332 115.68 -34.75 REMARK 500 8 ARG A 252 -51.34 -123.76 REMARK 500 8 HIS A 256 131.43 -38.52 REMARK 500 8 ASP A 271 -39.54 -35.57 REMARK 500 8 SER A 292 -32.30 -37.85 REMARK 500 8 THR A 322 140.28 -34.02 REMARK 500 8 ILE A 324 -70.24 -119.54 REMARK 500 REMARK 500 THIS ENTRY HAS 144 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001926.1 RELATED DB: TARGETDB DBREF 2E5K A 248 328 UNP Q8TF42 STS1_HUMAN 248 328 SEQADV 2E5K GLY A 241 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 242 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 243 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K GLY A 244 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 245 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 246 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K GLY A 247 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 329 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K GLY A 330 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K PRO A 331 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 332 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K SER A 333 UNP Q8TF42 CLONING ARTIFACT SEQADV 2E5K GLY A 334 UNP Q8TF42 CLONING ARTIFACT SEQRES 1 A 94 GLY SER SER GLY SER SER GLY SER ARG ASP ILE ARG PHE SEQRES 2 A 94 ALA ASN HIS GLU THR LEU GLN VAL ILE TYR PRO TYR THR SEQRES 3 A 94 PRO GLN ASN ASP ASP GLU LEU GLU LEU VAL PRO GLY ASP SEQRES 4 A 94 PHE ILE PHE MET SER PRO MET GLU GLN THR SER THR SER SEQRES 5 A 94 GLU GLY TRP ILE TYR GLY THR SER LEU THR THR GLY CYS SEQRES 6 A 94 SER GLY LEU LEU PRO GLU ASN TYR ILE THR LYS ALA ASP SEQRES 7 A 94 GLU CYS SER THR TRP ILE PHE HIS GLY SER SER GLY PRO SEQRES 8 A 94 SER SER GLY HELIX 1 1 PRO A 285 GLN A 288 5 4 SHEET 1 A 5 SER A 306 PRO A 310 0 SHEET 2 A 5 TRP A 295 SER A 300 -1 N GLY A 298 O GLY A 307 SHEET 3 A 5 PHE A 280 MET A 283 -1 N PHE A 282 O THR A 299 SHEET 4 A 5 GLU A 257 VAL A 261 -1 N GLU A 257 O MET A 283 SHEET 5 A 5 ILE A 314 LYS A 316 -1 O THR A 315 N GLN A 260 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000