PDB Short entry for 2E7G HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-JAN-07 2E7G TITLE SOLUTION STRUCTURE OF PUTATIVE RIBOSOME-BINDING FACTOR A (RBFA) FROM TITLE 2 HUMAN MUTOCHONDRIAL PRECURSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RIBOSOME-BINDING FACTOR A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KH FOLD; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C18ORF22; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050905-10; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RBFA, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.FURUE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2E7G 1 REMARK SEQADV REVDAT 2 24-FEB-09 2E7G 1 VERSN REVDAT 1 10-JUL-07 2E7G 0 JRNL AUTH M.FURUE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF PUTATIVE RIBOSOME-BINDING FACTOR A JRNL TITL 2 (RBFA) FROM HUMAN MUTOCHONDRIAL PRECURSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-07. REMARK 100 THE DEPOSITION ID IS D_1000026320. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.79MM 13C-15N PROTEIN; 20MM D REMARK 210 -TRIS-HCL(PH7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9748, CYANA 2.0.17, REMARK 210 OLIVA 1.10.5 REMARK 210 METHOD USED : TORSION ANGLE DYANAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 86 172.80 -47.76 REMARK 500 1 PRO A 111 3.00 -69.79 REMARK 500 1 ASN A 121 47.94 73.23 REMARK 500 1 SER A 134 -76.55 -90.00 REMARK 500 1 LEU A 144 33.74 -99.40 REMARK 500 1 GLN A 170 93.79 -64.32 REMARK 500 1 ARG A 174 -70.69 -69.51 REMARK 500 1 LYS A 185 38.93 -86.17 REMARK 500 1 ASN A 187 94.58 -49.22 REMARK 500 1 LEU A 197 117.27 -171.95 REMARK 500 1 ALA A 198 90.86 -62.75 REMARK 500 1 ALA A 200 145.64 -171.20 REMARK 500 2 SER A 80 41.92 34.38 REMARK 500 2 ASN A 121 53.91 74.45 REMARK 500 2 SER A 134 -76.05 -90.24 REMARK 500 2 MET A 168 -28.45 -37.87 REMARK 500 2 GLN A 170 135.60 -37.79 REMARK 500 2 THR A 172 -52.84 -120.62 REMARK 500 2 ARG A 174 -75.09 -90.35 REMARK 500 2 ASN A 187 94.70 -67.79 REMARK 500 2 SER A 202 109.89 -172.09 REMARK 500 3 PRO A 111 2.03 -69.78 REMARK 500 3 SER A 134 -75.15 -90.16 REMARK 500 3 LEU A 144 36.00 -88.13 REMARK 500 3 GLN A 170 163.02 -45.25 REMARK 500 3 THR A 172 -72.94 -36.99 REMARK 500 3 LEU A 173 170.29 -51.42 REMARK 500 3 PRO A 204 -179.47 -69.77 REMARK 500 4 PRO A 111 3.15 -69.73 REMARK 500 4 ASN A 121 54.33 71.91 REMARK 500 4 SER A 134 -76.82 -90.36 REMARK 500 4 GLN A 170 177.57 -51.72 REMARK 500 4 GLN A 171 -56.62 -128.73 REMARK 500 4 THR A 172 -35.75 -37.08 REMARK 500 4 ARG A 174 -73.96 -89.57 REMARK 500 4 ASP A 184 49.33 -75.36 REMARK 500 4 ALA A 191 35.55 -89.69 REMARK 500 4 ALA A 200 117.46 -173.47 REMARK 500 5 SER A 83 100.55 -54.12 REMARK 500 5 ARG A 86 171.81 -58.03 REMARK 500 5 ASN A 121 44.35 74.90 REMARK 500 5 SER A 134 -75.06 -90.06 REMARK 500 5 GLN A 170 93.38 -54.25 REMARK 500 6 SER A 81 109.57 -173.64 REMARK 500 6 PRO A 111 3.20 -69.79 REMARK 500 6 LYS A 126 147.43 -170.36 REMARK 500 6 SER A 134 -73.25 -90.85 REMARK 500 6 LEU A 144 35.70 -85.85 REMARK 500 6 ASN A 175 127.49 -34.10 REMARK 500 7 SER A 81 109.37 -168.68 REMARK 500 REMARK 500 THIS ENTRY HAS 170 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001000556.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A DIFFERENCE BETWEEN THE SEQRES AND THE SEQUENCE REMARK 999 DATABASE. UNIPROT IS VARIANT AT THIS POSITION. DBREF 2E7G A 86 201 UNP Q8N0V3 RBFAL_HUMAN 86 201 SEQADV 2E7G GLY A 79 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 80 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 81 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G GLY A 82 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 83 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 84 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G GLY A 85 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G VAL A 122 UNP Q8N0V3 MET 122 SEE REMARK 999 SEQADV 2E7G SER A 202 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G GLY A 203 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G PRO A 204 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 205 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G SER A 206 UNP Q8N0V3 CLONING ARTIFACT SEQADV 2E7G GLY A 207 UNP Q8N0V3 CLONING ARTIFACT SEQRES 1 A 129 GLY SER SER GLY SER SER GLY ARG LYS GLU ASP HIS ALA SEQRES 2 A 129 ARG LEU ARG ALA LEU ASN GLY LEU LEU TYR LYS ALA LEU SEQRES 3 A 129 THR ASP LEU LEU CYS THR PRO GLU VAL SER GLN GLU LEU SEQRES 4 A 129 TYR ASP LEU ASN VAL GLU LEU SER LYS VAL SER LEU THR SEQRES 5 A 129 PRO ASP PHE SER ALA CYS ARG ALA TYR TRP LYS THR THR SEQRES 6 A 129 LEU SER ALA GLU GLN ASN ALA HIS MET GLU ALA VAL LEU SEQRES 7 A 129 GLN ARG SER ALA ALA HIS MET ARG HIS LEU LEU MET SER SEQRES 8 A 129 GLN GLN THR LEU ARG ASN VAL PRO PRO ILE VAL PHE VAL SEQRES 9 A 129 GLN ASP LYS GLY ASN ALA ALA LEU ALA GLU LEU ASP GLN SEQRES 10 A 129 LEU LEU ALA VAL ALA ASP SER GLY PRO SER SER GLY HELIX 1 1 ARG A 92 LEU A 107 1 16 HELIX 2 2 GLN A 115 LEU A 120 1 6 HELIX 3 3 ALA A 146 ARG A 158 1 13 HELIX 4 4 ALA A 160 MET A 168 1 9 SHEET 1 A 3 LEU A 124 THR A 130 0 SHEET 2 A 3 CYS A 136 TYR A 139 -1 O TYR A 139 N LYS A 126 SHEET 3 A 3 ILE A 179 GLN A 183 1 O VAL A 180 N CYS A 136 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000