PDB Short entry for 2E7I HEADER LYASE 10-JAN-07 2E7I TITLE CRYSTAL STRUCTURE OF SEP-TRNA:CYS-TRNA SYNTHASE FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEP-TRNA:CYS-TRNA SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN AF_0028; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS SEVEN-STRANDED BETE-STRAND, LYASE, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR R.FUKUNAGA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 4 13-JUL-11 2E7I 1 VERSN REVDAT 3 24-FEB-09 2E7I 1 VERSN REVDAT 2 16-OCT-07 2E7I 1 AUTHOR KEYWDS REMARK REVDAT 1 17-JUL-07 2E7I 0 JRNL AUTH R.FUKUNAGA,S.YOKOYAMA JRNL TITL STRUCTURAL INSIGHTS INTO THE SECOND STEP OF RNA-DEPENDENT JRNL TITL 2 CYSTEINE BIOSYNTHESIS IN ARCHAEA: CRYSTAL STRUCTURE OF JRNL TITL 3 SEP-TRNA:CYS-TRNA SYNTHASE FROM ARCHAEOGLOBUS FULGIDUS JRNL REF J.MOL.BIOL. V. 370 128 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17512006 JRNL DOI 10.1016/J.JMB.2007.04.050 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 6060723.050 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27104 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4181 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.03000 REMARK 3 B22 (A**2) : 12.03000 REMARK 3 B33 (A**2) : -24.06000 REMARK 3 B12 (A**2) : 19.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.76 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.53 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.83 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.79 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.840 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 9.000 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.540 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.350; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 33.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2E7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB026322. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.995 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27104 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.300 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : 0.16000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : 0.50800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM SODIUM ACETATE BUFFER (PH 4.4), REMARK 280 160MM NACL, 1.00M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.97633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.95267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.46450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.44083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.48817 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.97633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.95267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.44083 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.46450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.48817 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.46450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -382.19953 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 33 REMARK 465 ASP A 34 REMARK 465 GLY A 35 REMARK 465 TYR A 36 REMARK 465 SER A 37 REMARK 465 VAL A 38 REMARK 465 CYS A 39 REMARK 465 ASP A 40 REMARK 465 PHE A 41 REMARK 465 CYS A 42 REMARK 465 THR A 43 REMARK 465 THR A 44 REMARK 465 GLY A 45 REMARK 465 ARG A 46 REMARK 465 LEU A 47 REMARK 465 ASP A 48 REMARK 465 GLU A 49 REMARK 465 ILE A 50 REMARK 465 LYS A 51 REMARK 465 THR A 52 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 33 REMARK 465 ASP B 34 REMARK 465 GLY B 35 REMARK 465 TYR B 36 REMARK 465 SER B 37 REMARK 465 VAL B 38 REMARK 465 CYS B 39 REMARK 465 ASP B 40 REMARK 465 PHE B 41 REMARK 465 CYS B 42 REMARK 465 THR B 43 REMARK 465 THR B 44 REMARK 465 GLY B 45 REMARK 465 ARG B 46 REMARK 465 LEU B 47 REMARK 465 ASP B 48 REMARK 465 GLU B 49 REMARK 465 ILE B 50 REMARK 465 LYS B 51 REMARK 465 THR B 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 121 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 -2.72 -58.76 REMARK 500 PRO A 54 26.37 -74.49 REMARK 500 PHE A 58 -71.27 -57.55 REMARK 500 ASN A 61 -75.73 -150.81 REMARK 500 ASN A 76 38.52 -80.86 REMARK 500 LYS A 92 123.92 -30.68 REMARK 500 TYR A 125 132.86 -28.25 REMARK 500 PRO A 164 176.15 -56.70 REMARK 500 TYR A 176 -5.97 -144.49 REMARK 500 ARG A 190 -71.21 -114.65 REMARK 500 LYS A 209 -20.63 -149.69 REMARK 500 GLU A 228 -9.49 -56.09 REMARK 500 ILE A 229 -61.18 -90.43 REMARK 500 LEU A 231 34.35 -86.75 REMARK 500 LYS A 238 -9.92 -56.27 REMARK 500 ALA A 249 44.78 20.12 REMARK 500 THR A 253 -77.83 -59.17 REMARK 500 ILE A 268 -15.15 -47.86 REMARK 500 ASP A 295 121.28 -33.43 REMARK 500 HIS A 300 144.23 173.35 REMARK 500 ALA A 317 157.62 -35.69 REMARK 500 LYS A 318 -74.38 -44.66 REMARK 500 LYS A 337 105.43 -41.52 REMARK 500 THR A 341 -35.91 -134.32 REMARK 500 TYR A 349 -82.55 -46.42 REMARK 500 ILE B 12 -4.29 -175.11 REMARK 500 LEU B 21 107.66 -51.21 REMARK 500 LEU B 30 -82.59 -56.94 REMARK 500 PRO B 54 10.92 -66.39 REMARK 500 ILE B 55 -52.49 -23.28 REMARK 500 ASN B 61 -82.79 -154.24 REMARK 500 ASP B 70 -77.23 -66.26 REMARK 500 ARG B 79 -39.22 -34.50 REMARK 500 LYS B 92 114.27 5.33 REMARK 500 ASP B 99 155.90 -48.72 REMARK 500 LEU B 115 163.72 -36.11 REMARK 500 THR B 123 -178.23 -65.70 REMARK 500 TYR B 125 129.18 -36.01 REMARK 500 TYR B 128 32.49 37.15 REMARK 500 GLU B 175 55.24 -95.89 REMARK 500 TYR B 176 -21.84 -161.40 REMARK 500 ILE B 203 132.74 -175.77 REMARK 500 SER B 210 17.28 -165.26 REMARK 500 GLU B 228 9.43 -62.38 REMARK 500 LEU B 231 36.27 -90.66 REMARK 500 ASN B 239 1.05 -69.63 REMARK 500 CYS B 247 99.35 -67.24 REMARK 500 THR B 248 0.89 -60.43 REMARK 500 ASP B 295 113.46 -9.06 REMARK 500 ALA B 307 77.54 -114.13 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1243 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A1263 DISTANCE = 7.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2E7J RELATED DB: PDB REMARK 900 RELATED ID: AR_001000847.2 RELATED DB: TARGETDB DBREF 2E7I A 1 371 UNP O30207 Y028_ARCFU 1 371 DBREF 2E7I B 1 371 UNP O30207 Y028_ARCFU 1 371 SEQRES 1 A 371 MET PHE LYS ARG GLU THR LYS ASP PHE ILE ASN ILE ASP SEQRES 2 A 371 PRO LEU GLN THR GLY GLY LYS LEU THR GLU GLU ALA ARG SEQRES 3 A 371 GLN ALA LEU LEU GLU TRP GLY ASP GLY TYR SER VAL CYS SEQRES 4 A 371 ASP PHE CYS THR THR GLY ARG LEU ASP GLU ILE LYS THR SEQRES 5 A 371 PRO PRO ILE HIS ASP PHE ILE HIS ASN GLN LEU PRO LYS SEQRES 6 A 371 PHE LEU GLY CYS ASP VAL ALA ARG VAL THR ASN GLY ALA SEQRES 7 A 371 ARG GLU ALA LYS PHE ALA VAL MET HIS SER LEU ALA LYS SEQRES 8 A 371 LYS ASP ALA TRP VAL VAL MET ASP GLU ASN CYS HIS TYR SEQRES 9 A 371 SER SER TYR VAL ALA ALA GLU ARG ALA GLY LEU ASN ILE SEQRES 10 A 371 ALA LEU VAL PRO LYS THR ASP TYR PRO ASP TYR ALA ILE SEQRES 11 A 371 THR PRO GLU ASN PHE ALA GLN THR ILE GLU GLU THR LYS SEQRES 12 A 371 LYS ARG GLY GLU VAL VAL LEU ALA LEU ILE THR TYR PRO SEQRES 13 A 371 ASP GLY ASN TYR GLY ASN LEU PRO ASP VAL LYS LYS ILE SEQRES 14 A 371 ALA LYS VAL CYS SER GLU TYR ASP VAL PRO LEU LEU VAL SEQRES 15 A 371 ASN GLY ALA TYR ALA ILE GLY ARG MET PRO VAL SER LEU SEQRES 16 A 371 LYS GLU ILE GLY ALA ASP PHE ILE VAL GLY SER GLY HIS SEQRES 17 A 371 LYS SER MET ALA ALA SER GLY PRO ILE GLY VAL MET GLY SEQRES 18 A 371 MET LYS GLU GLU TRP ALA GLU ILE VAL LEU ARG ARG SER SEQRES 19 A 371 GLU LYS TYR LYS ASN LYS GLU VAL GLU LEU LEU GLY CYS SEQRES 20 A 371 THR ALA ARG GLY ALA THR ILE ILE THR LEU MET ALA SER SEQRES 21 A 371 PHE PRO HIS VAL ARG GLU ARG ILE LYS ARG TRP ASP GLU SEQRES 22 A 371 GLU VAL GLU LYS ALA ARG ARG PHE ALA ALA GLU MET GLU SEQRES 23 A 371 LYS LEU GLY ILE LYS GLN LEU GLY ASP ASN PRO HIS ASN SEQRES 24 A 371 HIS ASP LEU MET PHE PHE HIS ALA GLU VAL LEU TYR GLU SEQRES 25 A 371 ILE SER LYS LYS ALA LYS GLY GLY ARG PHE PHE LEU TYR SEQRES 26 A 371 ARG GLU LEU LYS SER ARG LYS ILE HIS GLY ILE LYS PRO SEQRES 27 A 371 GLY LEU THR ARG TYR PHE LYS LEU SER THR TYR GLY LEU SEQRES 28 A 371 SER ASP GLU GLU VAL ASP TYR VAL LEU ASN ALA PHE LYS SEQRES 29 A 371 GLU ILE ILE GLU LYS TYR SER SEQRES 1 B 371 MET PHE LYS ARG GLU THR LYS ASP PHE ILE ASN ILE ASP SEQRES 2 B 371 PRO LEU GLN THR GLY GLY LYS LEU THR GLU GLU ALA ARG SEQRES 3 B 371 GLN ALA LEU LEU GLU TRP GLY ASP GLY TYR SER VAL CYS SEQRES 4 B 371 ASP PHE CYS THR THR GLY ARG LEU ASP GLU ILE LYS THR SEQRES 5 B 371 PRO PRO ILE HIS ASP PHE ILE HIS ASN GLN LEU PRO LYS SEQRES 6 B 371 PHE LEU GLY CYS ASP VAL ALA ARG VAL THR ASN GLY ALA SEQRES 7 B 371 ARG GLU ALA LYS PHE ALA VAL MET HIS SER LEU ALA LYS SEQRES 8 B 371 LYS ASP ALA TRP VAL VAL MET ASP GLU ASN CYS HIS TYR SEQRES 9 B 371 SER SER TYR VAL ALA ALA GLU ARG ALA GLY LEU ASN ILE SEQRES 10 B 371 ALA LEU VAL PRO LYS THR ASP TYR PRO ASP TYR ALA ILE SEQRES 11 B 371 THR PRO GLU ASN PHE ALA GLN THR ILE GLU GLU THR LYS SEQRES 12 B 371 LYS ARG GLY GLU VAL VAL LEU ALA LEU ILE THR TYR PRO SEQRES 13 B 371 ASP GLY ASN TYR GLY ASN LEU PRO ASP VAL LYS LYS ILE SEQRES 14 B 371 ALA LYS VAL CYS SER GLU TYR ASP VAL PRO LEU LEU VAL SEQRES 15 B 371 ASN GLY ALA TYR ALA ILE GLY ARG MET PRO VAL SER LEU SEQRES 16 B 371 LYS GLU ILE GLY ALA ASP PHE ILE VAL GLY SER GLY HIS SEQRES 17 B 371 LYS SER MET ALA ALA SER GLY PRO ILE GLY VAL MET GLY SEQRES 18 B 371 MET LYS GLU GLU TRP ALA GLU ILE VAL LEU ARG ARG SER SEQRES 19 B 371 GLU LYS TYR LYS ASN LYS GLU VAL GLU LEU LEU GLY CYS SEQRES 20 B 371 THR ALA ARG GLY ALA THR ILE ILE THR LEU MET ALA SER SEQRES 21 B 371 PHE PRO HIS VAL ARG GLU ARG ILE LYS ARG TRP ASP GLU SEQRES 22 B 371 GLU VAL GLU LYS ALA ARG ARG PHE ALA ALA GLU MET GLU SEQRES 23 B 371 LYS LEU GLY ILE LYS GLN LEU GLY ASP ASN PRO HIS ASN SEQRES 24 B 371 HIS ASP LEU MET PHE PHE HIS ALA GLU VAL LEU TYR GLU SEQRES 25 B 371 ILE SER LYS LYS ALA LYS GLY GLY ARG PHE PHE LEU TYR SEQRES 26 B 371 ARG GLU LEU LYS SER ARG LYS ILE HIS GLY ILE LYS PRO SEQRES 27 B 371 GLY LEU THR ARG TYR PHE LYS LEU SER THR TYR GLY LEU SEQRES 28 B 371 SER ASP GLU GLU VAL ASP TYR VAL LEU ASN ALA PHE LYS SEQRES 29 B 371 GLU ILE ILE GLU LYS TYR SER HET SO4 B 601 5 HET SO4 A 602 5 HET SO4 B 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET PLP A1209 15 HETNAM SO4 SULFATE ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 PLP C8 H10 N O6 P FORMUL 9 HOH *72(H2 O) HELIX 1 1 ASP A 13 GLY A 18 1 6 HELIX 2 2 THR A 22 TRP A 32 1 11 HELIX 3 3 PRO A 54 ASN A 61 1 8 HELIX 4 4 ASN A 61 GLY A 68 1 8 HELIX 5 5 GLY A 77 ALA A 90 1 14 HELIX 6 6 HIS A 103 ARG A 112 1 10 HELIX 7 7 THR A 131 GLY A 146 1 16 HELIX 8 8 ASP A 165 GLU A 175 1 11 HELIX 9 9 ALA A 185 ALA A 187 5 3 HELIX 10 10 SER A 194 GLY A 199 1 6 HELIX 11 11 TRP A 226 LEU A 231 1 6 HELIX 12 12 GLU A 241 LEU A 245 5 5 HELIX 13 13 GLY A 251 ILE A 268 1 18 HELIX 14 14 ARG A 270 LEU A 288 1 19 HELIX 15 15 ALA A 307 SER A 314 1 8 HELIX 16 16 GLY A 319 ARG A 321 5 3 HELIX 17 17 PHE A 322 SER A 330 1 9 HELIX 18 18 SER A 352 TYR A 370 1 19 HELIX 19 19 ASP B 13 GLY B 18 1 6 HELIX 20 20 THR B 22 TRP B 32 1 11 HELIX 21 21 PRO B 54 HIS B 60 1 7 HELIX 22 22 ASN B 61 LEU B 67 1 7 HELIX 23 23 GLY B 77 ALA B 90 1 14 HELIX 24 24 HIS B 103 ARG B 112 1 10 HELIX 25 25 THR B 131 LYS B 144 1 14 HELIX 26 26 ASP B 165 GLU B 175 1 11 HELIX 27 27 GLY B 184 ALA B 187 5 4 HELIX 28 28 SER B 194 GLY B 199 1 6 HELIX 29 29 GLY B 207 MET B 211 1 5 HELIX 30 30 TRP B 226 LEU B 231 1 6 HELIX 31 31 GLU B 241 LEU B 245 5 5 HELIX 32 32 GLY B 251 ILE B 268 1 18 HELIX 33 33 ARG B 270 GLY B 289 1 20 HELIX 34 34 ALA B 307 ALA B 317 1 11 HELIX 35 35 GLY B 319 ARG B 321 5 3 HELIX 36 36 PHE B 322 ARG B 331 1 10 HELIX 37 37 SER B 352 TYR B 370 1 19 SHEET 1 A 2 ILE A 10 ASN A 11 0 SHEET 2 A 2 ILE A 333 HIS A 334 1 O HIS A 334 N ILE A 10 SHEET 1 B 7 VAL A 71 THR A 75 0 SHEET 2 B 7 GLY A 218 MET A 222 -1 O GLY A 218 N THR A 75 SHEET 3 B 7 PHE A 202 SER A 206 -1 N ILE A 203 O GLY A 221 SHEET 4 B 7 LEU A 180 ASN A 183 1 N LEU A 180 O PHE A 202 SHEET 5 B 7 VAL A 148 THR A 154 1 N ALA A 151 O LEU A 181 SHEET 6 B 7 TRP A 95 ASP A 99 1 N VAL A 97 O LEU A 152 SHEET 7 B 7 ASN A 116 VAL A 120 1 O ALA A 118 N VAL A 96 SHEET 1 C 3 LYS A 291 LEU A 293 0 SHEET 2 C 3 LEU A 302 HIS A 306 -1 O HIS A 306 N LYS A 291 SHEET 3 C 3 TYR A 343 SER A 347 -1 O PHE A 344 N PHE A 305 SHEET 1 D 3 VAL B 71 THR B 75 0 SHEET 2 D 3 GLY B 218 MET B 222 -1 O GLY B 218 N THR B 75 SHEET 3 D 3 PHE B 202 SER B 206 -1 N GLY B 205 O VAL B 219 SHEET 1 E 4 ASN B 116 VAL B 120 0 SHEET 2 E 4 ALA B 94 ASP B 99 1 N VAL B 96 O ALA B 118 SHEET 3 E 4 GLU B 147 ILE B 153 1 O GLU B 147 N TRP B 95 SHEET 4 E 4 LEU B 180 VAL B 182 1 O LEU B 181 N ALA B 151 SHEET 1 F 3 LYS B 291 LEU B 293 0 SHEET 2 F 3 LEU B 302 HIS B 306 -1 O HIS B 306 N LYS B 291 SHEET 3 F 3 TYR B 343 SER B 347 -1 O LEU B 346 N MET B 303 LINK NZ LYS A 209 C4A PLP A1209 1555 1555 1.47 CISPEP 1 TYR A 125 PRO A 126 0 0.19 CISPEP 2 TYR A 155 PRO A 156 0 -0.14 CISPEP 3 ASN A 296 PRO A 297 0 -0.19 CISPEP 4 TYR B 125 PRO B 126 0 -0.16 CISPEP 5 TYR B 155 PRO B 156 0 -0.07 CISPEP 6 ASN B 296 PRO B 297 0 0.03 SITE 1 AC1 5 GLY B 77 ALA B 78 ARG B 79 SER B 206 SITE 2 AC1 5 HIS B 208 SITE 1 AC2 3 LYS A 20 ARG A 267 ARG A 270 SITE 1 AC3 5 LYS B 20 HIS B 263 ARG B 267 ARG B 270 SITE 2 AC3 5 GLY B 350 SITE 1 AC4 2 HIS A 56 HOH A1234 SITE 1 AC5 4 ARG A 79 HIS A 103 TYR A 104 HOH A1259 SITE 1 AC6 12 GLY A 77 ALA A 78 ARG A 79 LYS A 82 SITE 2 AC6 12 HIS A 103 SER A 105 ASN A 183 ALA A 185 SITE 3 AC6 12 TYR A 186 SER A 206 HIS A 208 LYS A 209 CRYST1 220.663 220.663 92.929 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004532 0.002616 0.000000 0.00000 SCALE2 0.000000 0.005233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010761 0.00000